<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN"> <HTML><HEAD><TITLE>Hippocampus M430.RO (Oct06) Metadata</TITLE> <META http-equiv=Content-Type content="text/html; charset=iso-8859-1"> <LINK REL="stylesheet" TYPE="text/css" HREF='/css/general.css'> <LINK REL="stylesheet" TYPE="text/css" HREF='/css/menu.css'> <SCRIPT SRC="/javascript/webqtl.js"></SCRIPT> </HEAD> <BODY bottommargin="2" leftmargin="2" rightmargin="2" topmargin="2" text=#000000 bgColor=#ffffff> <TABLE cellSpacing=5 cellPadding=4 width="100%" border=0> <TBODY> <TR> <script language="JavaScript" src="/javascript/header.js"></script> </TR> <TR> <TD bgColor=#eeeeee class="solidBorder"> <Table width= "100%" cellSpacing=0 cellPadding=5><TR> <!-- Body Start from Here --> <TD vAlign=top width="100%" height=200 bgColor=#eeeeee> <P class="title">Hippocampus M430 R. Overall Data Set<A HREF="/webqtl/main.py?FormID=editHtml"> <img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A></P> <P>Experimental transform of Hippocampus Consortium data set using a new Cell Definition File generated by Dr. Fan Meng at University of Michigan (see http://brainarray.mbni.med.umich.edu/Brainarray/Aboutus/Aboutus.asp). Implementation by Rupert Overall (Max-Delbruck-Centrum, Berlin). <P>The ID is the Entrez GeneID. Rupert Overal retransformed the CEL files with the affy.rma package in R using a new CDF file (Mm430_Mm_ENTREZG_8 from the website of Dr. Meng's group in Michigan "<http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp>http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp"). This bundles together probes belonging to the same Entrez Gene accession together. The raw output of this transform is, in fact, the GeneID with a trailing "_at" which we have removed to simplify translation into Gene Symbols. </TD> <!-- Body End Here --> </TR></TABLE> </TD> </TR> <TR> <TD align=center bgColor=#ddddff class="solidBorder"> <!--Start of footer--> <TABLE width="90%"> <script language='JavaScript' src='/javascript/footer.js'></script> </TABLE> <!--End of footer--> </TD> </TR> </TABLE> <!-- /Footer --> <!-- menu script itself. you should not modify this file --> <script language="JavaScript" src="/javascript/menu_new.js"></script> <!-- items structure. menu hierarchy and links are stored there --> <script language="JavaScript" src="/javascript/menu_items.js"></script> <!-- files with geometry and styles structures --> <script language="JavaScript" src="/javascript/menu_tpl.js"></script> <script language="JavaScript"> <!--// // Note where menu initialization block is located in HTML document. // Don't try to position menu locating menu initialization block in // some table cell or other HTML element. Always put it before </body> // each menu gets two parameters (see demo files) // 1. items structure // 2. geometry structure new menu (MENU_ITEMS, MENU_POS); // make sure files containing definitions for these variables are linked to the document // if you got some javascript error like "MENU_POS is not defined", then you've made syntax // error in menu_tpl.js file or that file isn't linked properly. // also take a look at stylesheets loaded in header in order to set styles //--> </script> </BODY> </HTML>