# Run with something like # # env GN2_PROFILE=/home/wrk/opt/gn-latest ./bin/genenetwork2 ./etc/default_settings.py -c ../test/requests/test-website.py http://localhost:5003 # # Mostly to pick up the Guix GN2_PROFILE and python modules import argparse from link_checker import check_links from link_checker import check_packaged_js_files from mapping_tests import check_mapping from navigation_tests import check_navigation from correlation_tests import check_correlations, check_correlations_correctness from main_web_functionality import check_main_web_functionality import link_checker import sys # Imports for integration tests from unittest import TestSuite, TextTestRunner, TestLoader print("Mechanical Rob firing up...") def host_is_online(host): import time import requests for count in range(1, 5): try: time.sleep(count) requests.get(host, verify=False) return True except Exception as cre: print(f"Retrying in {count + 1} seconds ...") print(f"Error: {cre}") return False def run_all(args_obj, parser): print("") print("Running all tests.") print(args_obj) assert host_is_online(args_obj.host), f"Could not connect to {args_obj.host}" link_checker.DO_FAIL = args_obj.fail check_main_web_functionality(args_obj, parser) check_links(args_obj, parser) check_packaged_js_files(args_obj, parser) check_mapping(args_obj, parser) check_correlations(args_obj, parser) # check_correlations_correctness(args_obj, parser) # TODO: Add other functions as they are created. def print_help(args_obj, parser): print(parser.format_help()) def dummy(args_obj, parser): print("Not implemented yet.") def initTest(klass, gn2_url, es_url): loader = TestLoader() methodNames = loader.getTestCaseNames(klass) return [klass(mname, gn2_url, es_url) for mname in methodNames] desc = """ This is Mechanical-Rob - an automated web server tester for Genenetwork.org """ parser = argparse.ArgumentParser(description=desc) parser.add_argument("--fail", help="Fail and stop on any error", action="store_true") parser.add_argument( "-d", "--database", metavar="DB", type=str, default="db_webqtl_s", help="Use database (default db_webqtl_s)", ) parser.add_argument( "host", metavar="HOST", type=str, default="http://localhost:5003", help="The url to the web server", ) parser.add_argument( "-a", "--all", dest="accumulate", action="store_const", const=run_all, default=print_help, help="Runs all tests.", ) parser.add_argument( "-l", "--link-checker", dest="accumulate", action="store_const", const=check_links, default=print_help, help="Checks for dead links.", ) parser.add_argument( "-f", "--main-functionality", dest="accumulate", action="store_const", const=check_main_web_functionality, default=print_help, help="Checks for main web functionality.", ) parser.add_argument( "-m", "--mapping", dest="accumulate", action="store_const", const=check_mapping, default=print_help, help="Checks for mapping.", ) parser.add_argument( "-c", "--correlations", dest="accumulate", action="store_const", const=check_correlations, default=print_help, help="Checks that correlations run correctly.", ) parser.add_argument( "-e", "--correlations-correctness", dest="accumulate", action="store_const", const=check_correlations_correctness, default=print_help, help="Check that the correlation results are correct" ) args = parser.parse_args() args.accumulate(args, parser)