import MySQLdb import re import configparser def get_cursor(): host = 'tux.uthsc.edu' user = 'webqtlout' passwd = 'webqtlout' db = 'db_webqtl' con = MySQLdb.Connect(db=db, host=host, user=user, passwd=passwd) cursor = con.cursor() return cursor, con def clearspaces(s, default=None): if s: s = re.sub('\s+', ' ', s) s = s.strip() return s else: return default def to_dic(keys, values): dic = {} for i in range(len(keys)): key = keys[i] value = values[i] dic[key] = value return dic def overlap(dic1, dic2): keys = [] values1 = [] values2 = [] for key in dic1.keys(): if key in dic2: value1 = dic1[key] value2 = dic2[key] if value1 and value2: keys.append(key) values1.append(value1) values2.append(value2) return keys, values1, values2 def to_db_string(s, default): if s: s = s.strip() if len(s) == 0: return default elif s == 'x': return default else: return s else: return default def to_db_float(s, default): if s: s = s.strip() if len(s) == 0: return default elif s == 'x': return default else: try: return float(s) except: return default else: return default def to_db_int(s, default): if s: s = s.strip() if len(s) == 0: return default elif s == 'x': return default else: try: return int(s) except: return default else: return default def get_config(configfile): config = configparser.ConfigParser() config.read(configfile) return config