import os import sys LOGFILE = "/tmp/genenetwork2.log" # This is needed because Flask turns key errors into a # 400 bad request response with no exception/log TRAP_BAD_REQUEST_ERRORS = True DB_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s" SQLALCHEMY_DATABASE_URI = 'mysql://gn2:mysql_password@localhost/db_webqtl_s' # http://pythonhosted.org/Flask-Security/configuration.html SECURITY_CONFIRMABLE = True SECURITY_TRACKABLE = True SECURITY_REGISTERABLE = True SECURITY_RECOVERABLE = True SECURITY_EMAIL_SENDER = "no-reply@genenetwork.org" SECURITY_POST_LOGIN_VIEW = "/thank_you" SQLALCHEMY_POOL_RECYCLE = 3600 SERVER_PORT = 5003 SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc' # Path overrides for Genenetwork GENENETWORK_FILES = "../../gn2_data" PYLMM_COMMAND = os.popen("which pylmm_redis").read() PLINK_COMMAND = os.popen("which plink2").read() GEMMA_COMMAND = os.popen("which gemma").read()