From a56e5e9d5d0c3f157599677e937deb0bbb71debb Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Thu, 29 Oct 2020 01:23:22 +0300
Subject: Replace map on strip with a list comprehension that calls strip()

* scripts/maintenance/readProbeSetSE_v7.py: In Python3 you can't map
string.strip on a list of strings. Instead use a list comprehension
and apply strip() on each element of the list.
* wqflask/wqflask/marker_regression/plink_mapping.py: Ditto.
* wqflask/wqflask/snp_browser/snp_browser.py: Ditto.
---
 wqflask/wqflask/marker_regression/plink_mapping.py | 4 ++--
 wqflask/wqflask/snp_browser/snp_browser.py         | 6 +++---
 2 files changed, 5 insertions(+), 5 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/marker_regression/plink_mapping.py b/wqflask/wqflask/marker_regression/plink_mapping.py
index 6c38c34f..fd91b6ca 100644
--- a/wqflask/wqflask/marker_regression/plink_mapping.py
+++ b/wqflask/wqflask/marker_regression/plink_mapping.py
@@ -84,7 +84,7 @@ def get_samples_from_ped_file(dataset):
 
     while line:
         lineList = line.strip().split('\t')
-        lineList = list(map(string.strip, lineList))
+        lineList = [item.strip() for item in lineList]
 
         sample_name = lineList[0]
         sample_list.append(sample_name)
@@ -157,6 +157,6 @@ def parse_plink_output(output_filename, species):
 def build_line_list(line=None):
     line_list = line.strip().split(' ')# irregular number of whitespaces between columns
     line_list = [item for item in line_list if item !='']
-    line_list = list(map(string.strip, line_list))
+    line_list = [item.strip() for item in line_list]
 
     return line_list
diff --git a/wqflask/wqflask/snp_browser/snp_browser.py b/wqflask/wqflask/snp_browser/snp_browser.py
index 2df71b12..6c3fcf53 100644
--- a/wqflask/wqflask/snp_browser/snp_browser.py
+++ b/wqflask/wqflask/snp_browser/snp_browser.py
@@ -457,7 +457,7 @@ class SnpBrowser(object):
                 function_list = []
                 if function_details:
                     function_list = function_details.strip().split(",")
-                    function_list = list(map(string.strip, function_list))
+                    function_list = [item.strip() for item in function_list]
                     function_list[0] = function_list[0].title()
                     function_details = ", ".join(item for item in function_list)
                     function_details = function_details.replace("_", " ")
@@ -723,11 +723,11 @@ def get_effect_details_by_category(effect_name = None, effect_value = None):
     codon_effect_group_list = ['Start Lost', 'Stop Gained', 'Stop Lost', 'Nonsynonymous', 'Synonymous']
 
     effect_detail_list = effect_value.strip().split('|')
-    effect_detail_list = list(map(string.strip, effect_detail_list))
+    effect_detail_list = [item.strip() for item in effect_detail_list]
 
     for index, item in enumerate(effect_detail_list):
         item_list = item.strip().split(',')
-        item_list = list(map(string.strip, item_list))
+        item_list = [item.strip() for item in item_list]
 
         gene_id = item_list[0]
         gene_name = item_list[1]
-- 
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