From ec0d6b9ee8ff1ec3baafb3967dcf5c28e4a823b6 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 5 Oct 2016 08:07:05 +0000
Subject: Reverted on genotype selector on page show_trait_mapping_tools.html -
 pending the full PR

---
 .../templates/show_trait_mapping_tools.html        | 38 ++++++++--------------
 1 file changed, 13 insertions(+), 25 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/templates/show_trait_mapping_tools.html b/wqflask/wqflask/templates/show_trait_mapping_tools.html
index 9c1101ca..0f293942 100644
--- a/wqflask/wqflask/templates/show_trait_mapping_tools.html
+++ b/wqflask/wqflask/templates/show_trait_mapping_tools.html
@@ -2,7 +2,7 @@
     {% if (use_pylmm_rqtl and dataset.group.species != "human") or use_plink_gemma %}
     <div class="col-xs-4">
         <div class="tabbable"> <!-- Only required for left/right tabs -->
-        
+
             <ul class="nav nav-pills">
                 {% if use_pylmm_rqtl and not use_plink_gemma and dataset.group.species != "human" %}
                 <li class="active">
@@ -32,18 +32,6 @@
                 {% if use_pylmm_rqtl and not use_plink_gemma and dataset.group.species != "human" %}
                 <div class="tab-pane active" id="interval_mapping">
                     <div style="margin-top: 20px" class="form-horizontal">
-                        {% if genofiles and genofiles|length>0 %}
-                        <div class="mapping_method_fields form-group">
-                            <label for="genofiles" class="col-xs-3 control-label">Geno&nbsp;File</label>
-                            <div style="margin-left: 20px;" class="col-xs-4 controls">
-                                <select name="genofile" class="form-control">
-                                    {% for item in genofiles %}
-                                    <option value="{{item[0]}}">{{item[1]}}</option>
-                                    {% endfor %}
-                                </select>
-                            </div>
-                        </div>
-                        {% endif %}
                         <div class="mapping_method_fields form-group">
                             <label for="mapping_permutations" class="col-xs-3 control-label">Permutations</label>
                             <div style="margin-left: 20px;" class="col-xs-4 controls">
@@ -73,7 +61,7 @@
                                     No
                                 </label>
                             </div>
-                        </div> 
+                        </div>
 
 <!--
                         <div class="mapping_method_fields form-group">
@@ -87,7 +75,7 @@
 
                         <div class="mapping_method_fields form-group">
                             <label style="text-align:left;" class="col-xs-12 control-label">Display Additive Effect</label>
-                            <div class="col-xs-12 controls" id="display_additive_effect">                      
+                            <div class="col-xs-12 controls" id="display_additive_effect">
                                 <label class="radio-inline">
                                     <input type="radio" name="display_additive" id="display_additive" value="yes" checked="">
                                     Yes
@@ -103,7 +91,7 @@
 
                         <div class="mapping_method_fields form-group">
                             <label style="text-align:left;" class="col-xs-3 control-label">Marker<br>Regression</label>
-                            <div style="margin-left: 20px;" class="col-xs-4 controls">                      
+                            <div style="margin-left: 20px;" class="col-xs-4 controls">
                                 <label class="radio-inline">
                                     <input type="radio" name="manhattan_plot_reaper" value="True">
                                     Yes
@@ -158,7 +146,7 @@
 
                         <div class="mapping_method_fields form-group">
                             <label style="text-align:left;" class="col-xs-12 control-label">Manhattan Plot</label>
-                            <div class="col-xs-12 controls">                      
+                            <div class="col-xs-12 controls">
                                 <label class="radio-inline">
                                     <input type="radio" name="manhattan_plot_pylmm" value="True">
                                     Yes
@@ -179,7 +167,7 @@
                     </div>
                 </div>
                 <div class="tab-pane" id="rqtl_geno">
-                    
+
                     <div style="margin-top: 20px" class="form-horizontal">
                         <div class="mapping_method_fields form-group">
                             <label for="mapping_permutations" class="col-xs-3 control-label">Permutations</label>
@@ -238,7 +226,7 @@
 
                         <div class="mapping_method_fields form-group">
                             <label style="text-align:left;" class="col-xs-12 control-label">Pair Scan</label>
-                            <div class="col-xs-12 controls">                      
+                            <div class="col-xs-12 controls">
                                 <label class="radio-inline">
                                     <input type="radio" name="pair_scan" value="true">
                                     Yes
@@ -252,7 +240,7 @@
 
                         <div class="mapping_method_fields form-group">
                             <label style="text-align:left;" class="col-xs-12 control-label">Manhattan Plot</label>
-                            <div class="col-xs-12 controls">                      
+                            <div class="col-xs-12 controls">
                                 <label class="radio-inline">
                                     <input type="radio" name="manhattan_plot_rqtl" value="True">
                                     Yes
@@ -284,7 +272,7 @@
                             </div>
                         </div>
                     </div>
-                    
+
                     <div class="form-group">
                         <label for="plink_compute" class="col-xs-1 control-label"></label>
                         <div style="margin-left:20px;" class="col-xs-4 controls">
@@ -294,7 +282,7 @@
                         </div>
                     </div>
                 </div>
-                
+
                 <div class="tab-pane" id="gemma">
                     <div style="padding: 20px" class="form-horizontal">
                         <div class="mapping_method_fields form-group">
@@ -304,7 +292,7 @@
                             </div>
                         </div>
                     </div>
-                    
+
                     <div class="form-group">
                         <label for="gemma_compute" class="col-xs-1 control-label"></label>
                         <div style="margin-left:20px;" class="col-xs-4 controls">
@@ -313,12 +301,12 @@
                             </button>
                         </div>
                     </div>
-                </div>                
+                </div>
                 {% endif %}
             </div>
         </div>
     </div>
-    <div class="col-xs-6"> 
+    <div class="col-xs-6">
         <dl>
              <dt>Interval Mapping</dt>
              <dd>Interval mapping is a process in which the statistical significance of a hypothetical QTL is evaluated at regular points across a chromosome, even in the absence of explicit genotype data at those points.</dd>
-- 
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