From e1b7c18b3d42600746f03ade29030e8a14c7ea1d Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 19 Sep 2022 09:30:08 +0300
Subject: Remove "wrong" assertions

The assertions was checking that the function was implemented a certain
way, rather than whether the function was doing the correct thing.
---
 wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py | 2 --
 1 file changed, 2 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
index 53d96d7f..43051828 100644
--- a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
+++ b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
@@ -68,13 +68,11 @@ class TestGemmaMapping(unittest.TestCase):
         mock_parse_loco.return_value = []
         results = run_gemma(this_trait=trait, this_dataset=dataset, samples=[
         ], vals=[], covariates="", use_loco=True)
-        self.assertEqual(mock_os.system.call_count, 2)
         mock_gen_pheno_txt.assert_called_once()
         mock_parse_loco.assert_called_once_with(
             dataset, "GP1_GWA_RRRRRR", True)
         mock_os.path.isfile.assert_called_once_with(
             ('/home/user/imgfile_output.assoc.txt'))
-        self.assertEqual(mock_flat_files.call_count, 4)
         self.assertEqual(results, ([], "GP1_GWA_RRRRRR"))
 
     @mock.patch("wqflask.marker_regression.gemma_mapping.TEMPDIR", "/home/user/data")
-- 
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