From d5c6bb7abfb3535c1fa5d0d8df95645a213ab030 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Thu, 23 Jun 2022 20:11:28 +0000
Subject: Remove HTML table from collections/view.html and replace with list of
 column definitions passed to create_datatable.js

---
 wqflask/wqflask/templates/collections/view.html | 215 +++++++++++++++---------
 1 file changed, 138 insertions(+), 77 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/templates/collections/view.html b/wqflask/wqflask/templates/collections/view.html
index 6d0e3edd..6ea129f9 100644
--- a/wqflask/wqflask/templates/collections/view.html
+++ b/wqflask/wqflask/templates/collections/view.html
@@ -95,72 +95,9 @@
             </div>
             <div style="min-width: 1500px;">
                 <table class="table-hover table-striped cell-border" id='trait_table' style="float: left;">
-                    <thead>
-                        <tr>
-                            <th></th>
-                            <th data-export="Index">Index</th>
-                            <th data-export="Dataset">Dataset</th>
-                            <th data-export="Record">Record</th>
-                            <th data-export="Symbol">Symbol</th>
-                            <th data-export="Description">Description</th>
-                            <th data-export="Location">Location</th>
-                            <th data-export="Mean">Mean</th>
-                            <th data-export="Max LRS">High P <a href="{{ url_for('glossary_blueprint.glossary') }}#L" target="_blank"><sup style="font-size: small; color: #FF0000;"> ?</sup></a></th>
-                            <th data-export="Peak Location">Peak Location</th>
-                            <th data-export="Add. Eff.">Effect Size <a href="{{ url_for('glossary_blueprint.glossary') }}#A" target="_blank"><sup style="font-size: small; color: #FF0000;"> ?</sup></a></th>
-                        </tr>
-                    </thead>
-
                     <tbody>
-                    {% for this_trait in trait_obs %}
-                        <TR id="trait:{{ this_trait.name }}:{{ this_trait.dataset.name }}">
-                            <TD align="center" style="padding: 0px;"><input type="checkbox"
-                                                                            name="searchResult"
-                                                                            class="checkbox trait_checkbox"
-                                                                            value="{{data_hmac('{}:{}'.format(this_trait.name, this_trait.dataset.name))}}"
-                                                                            data-trait-info="{{trait_info_str(this_trait)}}">
-                            </TD>
-                            <TD data-export="{{ loop.index }}" align="right">{{ loop.index }}</TD>
-                            <TD title="{{ this_trait.dataset.fullname }}" data-export="{{ this_trait.dataset.fullname }}">{{ this_trait.dataset.fullname }}</TD>
-                            <TD data-export="{{ this_trait.name }}">
-                                <a href="{{ url_for('show_trait_page',
-                                        trait_id = this_trait.name,
-                                        dataset = this_trait.dataset.name
-                                        )}}">
-                                    {{ this_trait.display_name }}
-                                </a>
-                            </TD>
-                            {% if this_trait.symbol %}
-                            <TD title="{{ this_trait.symbol }}" data-export="{{ this_trait.symbol }}">{% if this_trait.symbol|length > 20 %}{{ this_trait.symbol[:20] }}...{% else %}{{ this_trait.symbol }}{% endif %}</TD>
-                            {% elif this_trait.abbreviation %}
-                            <TD title="{{ this_trait.abbreviation }}" data-export="{{ this_trait.abbreviation }}">{% if this_trait.abbreviation|length > 20 %}{{ this_trait.abbreviation[:20] }}...{% else %}{{ this_trait.abbreviation }}{% endif %}</TD>
-                            {% else %}
-                            <TD data-export="N/A">N/A</TD>
-                            {% endif %}
-                            {% if this_trait.dataset.type == "Geno" %}
-                            <TD title="Marker: {{ this_trait.name }}" data-export="Marker: {{ this_trait.name }}">Marker: {{ this_trait.name }}</TD>
-                            {% elif this_trait.description_display != "" %}
-                            <TD title="{{ this_trait.description_display }}" data-export="{{ this_trait.description_display }}">{{ this_trait.description_display }}</TD>
-                            {% else %}
-                            <TD title="N/A" data-export="N/A">N/A</TD>
-                            {% endif %}
-                            <TD data-export="{{ this_trait.location_repr }}">{{ this_trait.location_repr }}</TD>
-                            <TD data-export="{{ this_trait.mean }}" align="right">{{ '%0.3f' % this_trait.mean|float }}</TD>
-                            {% if this_trait.LRS_score_repr|float > 0 %}
-                            <TD data-export="{{ this_trait.LRS_score_repr }}" align="right">{{ '%0.3f' % this_trait.LRS_score_repr|float }}</TD>
-                            {% else %}
-                            <TD data-export="{{ this_trait.LRS_score_repr }}" align="right">N/A</TD>
-                            {% endif %}
-                            <TD data-export="{{ this_trait.LRS_location_repr }}">{{ this_trait.LRS_location_repr }}</TD>
-                            {% if this_trait.additive|float != 0 %}
-                            <TD data-export="{{ this_trait.additive }}" align="right">{{ '%0.3f' % this_trait.additive|float }}</TD>
-                            {% else %}
-                            <TD data-export="{{ this_trait.additive }}" align="right">N/A</TD>
-                            {% endif %}
-                        </TR>
-                    {% endfor %}
+                        <td colspan="100%" align="center"><br><b><font size="15">Loading...</font></b><br></td>
                     </tbody>
-
                 </table>
             </div>
             <br />
@@ -198,20 +135,144 @@
 
             column_defs = [
                 {
-                    "orderDataType": "dom-checkbox",
-                    "orderSequence": [ "desc", "asc"],
-                    "width": 10
+                    'data': null,
+                    'width': "5px",
+                    'orderDataType': "dom-checkbox",
+                    'targets': 0,
+                    'render': function(data, type, row, meta) {
+                        return '<input type="checkbox" name="searchResult" class="checkbox trait_checkbox" value="' + data.hmac + '">'
+                    }
+                },
+                {
+                    'title': "Index",
+                    'type': "natural",
+                    'width': "35px",
+                    'searchable': false,
+                    'orderable': false,
+                    'targets': 1,
+                    'render': function(data, type, row, meta) {
+                        return meta.row
+                    }
+                },
+                {
+                    'title': "Dataset",
+                    'type': "natural",
+                    'targets': 2,
+                    'data': "dataset"
+                },
+                {
+                    'title': "Record",
+                    'type': "natural-minus-na",
+                    'width': "120px",
+                    'targets': 3,
+                    'data': null,
+                    'render': function(data, type, row, meta) {
+                        return '<a target="_blank" href="/show_trait?trait_id=' + data.name + '&dataset=' + data.dataset + '">' + data.display_name + '</a>'
+                    }
                 },
-                { "type": "natural", "width": 50 },
-                { "type": "natural" },
-                { 'type': "natural-minus-na", "width": 120 },
-                { "type": "natural" },
-                { "type": "natural"  },
-                { "type": "natural", "width": 125 },
-                { "type": "natural", "width": 60 },
-                { "type": "natural", "width": 60 },
-                { "type": "natural", "width": 125 },
-                { "type": "natural", "width": 85 }
+                {
+                    'title': "Symbol",
+                    'type': "natural",
+                    'targets': 4,
+                    'data': null,
+                    'render': function(data, type, row, meta) {
+                        if (Object.hasOwn(data, 'symbol')){
+                            return data.symbol
+                        } else {
+                            return "N/A"
+                        }
+                    }
+                },
+                {
+                    'title': "Description",
+                    'type': "natural",
+                    'targets': 5,
+                    'data': null,
+                    'render': function(data, type, row, meta) {
+                        if (Object.hasOwn(data, 'description')){
+                            try {
+                                return decodeURIComponent(escape(data.description))
+                            } catch(err){
+                                return escape(data.description)
+                            }
+                        } else {
+                            return "N/A"
+                        }
+                    }
+                },
+                {
+                    'title': "<div style='text-align: right;'>Location</div>",
+                    'type': "natural-minus-na",
+                    'width': "125px",
+                    'targets': 6,
+                    'data': null,
+                    'render': function(data, type, row, meta) {
+                        if (Object.hasOwn(data, 'location')){
+                            return data.location
+                        } else {
+                            return "N/A"
+                        }
+                    }
+                },
+                {
+                    'title': "<div style='text-align: right;'>Mean</div>",
+                    'type': "natural-minus-na",
+                    'width': "60px",
+                    'data': null,
+                    'targets': 7,
+                    'orderSequence': [ "desc", "asc"],
+                    'render': function(data, type, row, meta) {
+                        if (Object.hasOwn(data, 'mean')){
+                            return data.mean.toFixed(3)
+                        } else {
+                            return "N/A"
+                        }
+                    }
+                },
+                {
+                    'title': "<div style='text-align: right; padding-right: 10px;'>Peak</div> <div style='text-align: right;'>LOD <a href=\"{{ url_for('glossary_blueprint.glossary') }}#LRS\" target=\"_blank\" style=\"color: white;\"><sup style='color: #FF0000;'><i>?</i></sup></a></div>",
+                    'type': "natural-minus-na",
+                    'data': null,
+                    'width': "60px",
+                    'targets': 8,
+                    'orderSequence': [ "desc", "asc"],
+                    'render': function(data, type, row, meta) {
+                        if (Object.hasOwn(data, 'lrs_score')){
+                            return (data.lrs_score / 4.61).toFixed(3)
+                        } else {
+                            return "N/A"
+                        }
+                    }
+                },
+                {
+                    'title': "<div style='text-align: right;'>Peak Location</div>",
+                    'type': "natural-minus-na",
+                    'data': null,
+                    'width': "125px",
+                    'targets': 9,
+                    'render': function(data, type, row, meta) {
+                        if (Object.hasOwn(data, 'lrs_location')){
+                            return data.lrs_location
+                        } else {
+                            return "N/A"
+                        }
+                    }
+                },
+                {
+                    'title': "<div style='text-align: right; padding-right: 10px;'>Effect</div> <div style='text-align: right;'>Size <a href=\"{{ url_for('glossary_blueprint.glossary') }}#A\" target=\"_blank\" style=\"color: white;\"><sup style='color: #FF0000;'><i>?</i></sup></a></div>",
+                    'type': "natural-minus-na",
+                    'data': null,
+                    'width': "85px",
+                    'targets': 10,
+                    'orderSequence': [ "desc", "asc"],
+                    'render': function(data, type, row, meta) {
+                        if (Object.hasOwn(data, 'additive')){
+                            return data.additive.toFixed(3)
+                        } else {
+                            return "N/A"
+                        }
+                    }
+                }
             ]
 
             table_settings = {
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