From bfe557dc1e537dc78a82a30817ecf2ca3004d978 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 19 Apr 2023 11:29:19 +0300
Subject: oauth2: phenotypes: Enable search from user input.

---
 wqflask/wqflask/oauth2/data.py                      | 21 +++++++++++++++++++++
 .../static/new/javascript/auth/search_phenotypes.js | 13 ++++++++-----
 .../templates/oauth2/data-list-phenotype.html       |  2 +-
 3 files changed, 30 insertions(+), 6 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/oauth2/data.py b/wqflask/wqflask/oauth2/data.py
index 5026a6d1..d7be85f0 100644
--- a/wqflask/wqflask/oauth2/data.py
+++ b/wqflask/wqflask/oauth2/data.py
@@ -76,6 +76,7 @@ def __search_phenotypes__(query, template, **kwargs):
             selected_traits=selected_traits, search_results=search_results,
             search_endpoint=urljoin(
                 app.config["GN_SERVER_URL"], "oauth2/data/search"),
+            gn_server_url = app.config["GN_SERVER_URL"],
             results_endpoint=urljoin(
                 app.config["GN_SERVER_URL"],
                 f"oauth2/data/search/phenotype/{job_id}"),
@@ -124,6 +125,26 @@ def json_search_mrna() -> Response:
             __handle_error__,
             lambda datasets: jsonify(datasets))
 
+@data.route("/phenotype/search", methods=["POST"])
+def json_search_phenotypes() -> Response:
+    """Search for phenotypes."""
+    form = request.json
+    def __handle_error__(err):
+        error = process_error(err)
+        return jsonify(error), error["status_code"]
+
+    return oauth2_get(
+        "oauth2/data/search",
+        json={
+            "dataset_type": "phenotype",
+            "species_name": form["species_name"],
+            "query": form.get("query", ""),
+            "per_page": int(form.get("per_page", 50)),
+            "page": int(form.get("page", 1)),
+            "gn3_server_uri": app.config["GN_SERVER_URL"],
+            "selected_traits": form.get("selected_traits", [])
+        }).either(__handle_error__, jsonify)
+
 @data.route("/<string:species_name>/<string:dataset_type>/list",
             methods=["GET", "POST"])
 def list_data_by_species_and_dataset(
diff --git a/wqflask/wqflask/static/new/javascript/auth/search_phenotypes.js b/wqflask/wqflask/static/new/javascript/auth/search_phenotypes.js
index 7cccbb3a..98396924 100644
--- a/wqflask/wqflask/static/new/javascript/auth/search_phenotypes.js
+++ b/wqflask/wqflask/static/new/javascript/auth/search_phenotypes.js
@@ -96,7 +96,8 @@ function display_search_results(data, textStatus, jqXHR) {
  * @param {UUID}: The job id to fetch data for
  */
 function fetch_search_results(job_id, success, error=default_error_fn) {
-    endpoint = $("#frm-search-traits").attr("data-search-results-endpoint");
+    host = $("#frm-search-traits").attr("data-gn-server-url");
+    endpoint = host + "oauth2/data/search/phenotype/" + job_id
     $("#txt-search").prop("disabled", true);
     $.ajax(
 	endpoint,
@@ -113,22 +114,24 @@ function fetch_search_results(job_id, success, error=default_error_fn) {
 function search_phenotypes() {
     query = document.getElementById("txt-query").value;
     selected = JSON.parse(document.getElementById(
-	"tbl-link-phenotypes").getAttribute("data-traitss"));
+	"tbl-link-phenotypes").getAttribute("data-traits"));
     species_name = document.getElementById("txt-species-name").value
     per_page = document.getElementById("txt-per-page").value
     search_table = new TableDataSource(
 	"#tbl-phenotypes", "data-traits", search_checkbox);
+    endpoint = "/oauth2/data/phenotype/search"
     $.ajax(
-	"/oauth2/data/search",
+	endpoint,
 	{
-	    "method": "GET",
+	    "method": "POST",
 	    "contentType": "application/json; charset=utf-8",
 	    "dataType": "json",
 	    "data": JSON.stringify({
 		"query": query,
 		"species_name": species_name,
 		"dataset_type": "phenotype",
-		"per_page": per_page
+		"per_page": per_page,
+		"selected_traits": selected
 	    }),
 	    "error": default_error_fn,
 	    "success": (data, textStatus, jqXHR) => {
diff --git a/wqflask/wqflask/templates/oauth2/data-list-phenotype.html b/wqflask/wqflask/templates/oauth2/data-list-phenotype.html
index 9838a38d..8329e023 100644
--- a/wqflask/wqflask/templates/oauth2/data-list-phenotype.html
+++ b/wqflask/wqflask/templates/oauth2/data-list-phenotype.html
@@ -110,7 +110,7 @@
     <form id="frm-search-traits"
 	  action="#"
 	  method="POST"
-	  data-search-results-endpoint="{{results_endpoint}}">
+	  data-gn-server-url="{{gn_server_url}}">
       {%if dataset_type == "mrna"%}
       <legend>mRNA: Search</legend>
       {%else%}
-- 
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