From aabc6abba32a635db16dca8dc4df5c3085f18806 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Sun, 25 Sep 2016 09:17:47 +0000
Subject: Settings: enforce MAPPING_PATH only when running plink_gemma

---
 wqflask/wqflask/show_trait/show_trait.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py
index 912beabe..2fd525a5 100644
--- a/wqflask/wqflask/show_trait/show_trait.py
+++ b/wqflask/wqflask/show_trait/show_trait.py
@@ -24,7 +24,6 @@ from basicStatistics import BasicStatisticsFunctions
 from pprint import pformat as pf
 
 from utility.tools import flat_files
-MAPPING_PATH = flat_files("mapping")
 
 from utility.logger import getLogger
 logger = getLogger(__name__ )
@@ -163,6 +162,7 @@ class ShowTrait(object):
     def get_mapping_methods(self):
         '''Only display mapping methods when the dataset group's genotype file exists'''
         def check_plink_gemma():
+            MAPPING_PATH = flat_files("mapping")
             if (os.path.isfile(MAPPING_PATH+"/"+self.dataset.group.name+".bed") and
                 os.path.isfile(MAPPING_PATH+"/"+self.dataset.group.name+".map")):
                 return True
-- 
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