From a5c95ecda29c434c1475635921d77aa35c39033d Mon Sep 17 00:00:00 2001
From: zsloan
Date: Wed, 11 Dec 2019 11:09:33 -0600
Subject: Added some text explaining the new option to specifiy chromosome for
 cis/trans LRS searches, though Rob will probably want to edit

---
 wqflask/wqflask/templates/index_page_orig.html | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/templates/index_page_orig.html b/wqflask/wqflask/templates/index_page_orig.html
index 8c7ea3cf..10f7e0dd 100755
--- a/wqflask/wqflask/templates/index_page_orig.html
+++ b/wqflask/wqflask/templates/index_page_orig.html
@@ -158,7 +158,8 @@
                             with an <b>inclusion</b> zone of 5 Mb around the parent gene.</li>
 
                         <li><b>transLRS=(15 1000 5)</b> or <b>transLOD=(2 8 5)</b> finds all trans eQTLs with peak LRS or LOD scores between lower and upper limits,
-                            with an <b>exclusion</b> zone of 5 Mb around the parent gene.</li>
+                            with an <b>exclusion</b> zone of 5 Mb around the parent gene. You can also add a fourth term specifying which chromosome you want the transLRS to be on
+                            (for example transLRS=(15 1000 5 7) would find all trans eQTLs with peak LRS on chromosome 7 that is also a trans eQTL with exclusionary zone of 5Mb).</li>
 
                         <li><b>POSITION=(Chr4 122 130) cisLRS=(9 999 10)</b>
                             finds all traits on Chr 4 from 122 and 155 Mb with cisLRS scores
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