From a593fb56a01f2015491299af7274270228f9230c Mon Sep 17 00:00:00 2001 From: zsloan Date: Mon, 4 Feb 2019 10:56:02 -0600 Subject: Changed the way the table is drawn for the search pages so that it can show when loading and more easily control cell contents Added typeahead to snp_browser (still need to tell it only to use it for rat, though) Added WebGestalt link to collection page (still need to add it and BNW to other trait list pages) --- .../wqflask/external_tools/send_to_webgestalt.py | 126 + wqflask/wqflask/gsearch.py | 40 +- wqflask/wqflask/search_results.py | 58 +- .../wqflask/static/new/css/typeahead-bootstrap.css | 94 + .../static/new/javascript/typeahead_rn6.json | 1 + .../static/new/js_external/typeahead.bundle.js | 2451 ++++++++++++++++++++ wqflask/wqflask/templates/collections/view.html | 6 +- wqflask/wqflask/templates/gsearch_gene.html | 11 +- wqflask/wqflask/templates/gsearch_pheno.html | 208 +- wqflask/wqflask/templates/search_result_page.html | 352 ++- wqflask/wqflask/templates/snp_browser.html | 36 + wqflask/wqflask/templates/webgestalt_page.html | 35 + wqflask/wqflask/views.py | 20 +- 13 files changed, 3139 insertions(+), 299 deletions(-) create mode 100644 wqflask/wqflask/external_tools/send_to_webgestalt.py create mode 100644 wqflask/wqflask/static/new/css/typeahead-bootstrap.css create mode 100644 wqflask/wqflask/static/new/javascript/typeahead_rn6.json create mode 100644 wqflask/wqflask/static/new/js_external/typeahead.bundle.js create mode 100644 wqflask/wqflask/templates/webgestalt_page.html (limited to 'wqflask') diff --git a/wqflask/wqflask/external_tools/send_to_webgestalt.py b/wqflask/wqflask/external_tools/send_to_webgestalt.py new file mode 100644 index 00000000..30ca024f --- /dev/null +++ b/wqflask/wqflask/external_tools/send_to_webgestalt.py @@ -0,0 +1,126 @@ +## Copyright (C) University of Tennessee Health Science Center, Memphis, TN. +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. +# See the GNU Affero General Public License for more details. +# +# This program is available from Source Forge: at GeneNetwork Project +# (sourceforge.net/projects/genenetwork/). +# +# Contact Dr. Robert W. Williams at rwilliams@uthsc.edu +# +# +# This module is used by GeneNetwork project (www.genenetwork.org) + +from __future__ import absolute_import, print_function, division + +import string + +from flask import Flask, g + +from base.trait import GeneralTrait, retrieve_trait_info +from base.species import TheSpecies +from utility import helper_functions, corr_result_helpers + +import utility.logger +logger = utility.logger.getLogger(__name__ ) + +class SendToWebGestalt(object): + def __init__(self, start_vars): + trait_db_list = [trait.strip() for trait in start_vars['trait_list'].split(',')] + helper_functions.get_trait_db_obs(self, trait_db_list) + + self.chip_name = test_chip(self.trait_list) + + self.wrong_input = "False" + if self.chip_name == "mixed" or self.chip_name == "not_microarray" or '_NA' in self.chip_name: + self.wrong_input = "True" + else: + trait_name_list, gene_id_list = gen_gene_id_list(self.trait_list) + + self.target_url = "http://www.webgestalt.org/option.php" + + id_type = "entrezgene" + + self.hidden_vars = { + 'gene_list' : string.join(gene_id_list, "\n"), + 'id_type' : "entrezgene", + 'ref_set' : "genome", + 'enriched_database_category' : "geneontology", + 'enriched_database_name' : "Biological_Process", + 'sig_method' : "fdr", + 'sig_value' : "0.05", + 'enrich_method' : "ORA", + 'fdr_method' : "BH", + 'min_num' : "2" + } + + species = self.trait_list[0][1].group.species + if species == "rat": + self.hidden_vars['organism'] = "rnorvegicus" + elif species == "human": + self.hidden_vars['organism'] = "hsapiens" + elif species == "mouse": + self.hidden_vars['organism'] = "mmusculus" + else: + self.hidden_vars['organism'] = "others" + +def test_chip(trait_list): + final_chip_name = "" + + for trait_db in trait_list: + dataset = trait_db[1] + result = g.db.execute("""SELECT GeneChip.GO_tree_value + FROM GeneChip, ProbeFreeze, ProbeSetFreeze + WHERE GeneChip.Id = ProbeFreeze.ChipId and + ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and + ProbeSetFreeze.Name = '%s'""" % dataset.name).fetchone() + + if result: + chip_name = result[0] + if chip_name: + if chip_name != final_chip_name: + if final_chip_name: + return "mixed" + else: + final_chip_name = chip_name + else: + pass + else: + result = g.db.execute("""SELECT GeneChip.Name + FROM GeneChip, ProbeFreeze, ProbeSetFreeze + WHERE GeneChip.Id = ProbeFreeze.ChipId and + ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and + ProbeSetFreeze.Name = '%s'""" % dataset.name).fetchone() + chip_name = '%s_NA' % result[0] + return chip_name + else: + query = """SELECT GeneChip.Name + FROM GeneChip, ProbeFreeze, ProbeSetFreeze + WHERE GeneChip.Id = ProbeFreeze.ChipId and + ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and + ProbeSetFreeze.Name = '%s'""" % dataset.name + result = g.db.execute(query).fetchone() + if result == None: + return "not_microarray" + else: + chip_name = '%s_NA' % result[0] + return chip_name + + return chip_name + +def gen_gene_id_list(trait_list): + trait_name_list = [] + gene_id_list = [] + for trait_db in trait_list: + trait = trait_db[0] + trait_name_list.append(trait.name) + retrieve_trait_info(trait, trait.dataset) + gene_id_list.append(str(trait.geneid)) + return trait_name_list, gene_id_list \ No newline at end of file diff --git a/wqflask/wqflask/gsearch.py b/wqflask/wqflask/gsearch.py index 99dd087d..357f989d 100644 --- a/wqflask/wqflask/gsearch.py +++ b/wqflask/wqflask/gsearch.py @@ -67,7 +67,7 @@ class GSearch(object): this_trait['name'] = line[5] this_trait['dataset'] = line[3] this_trait['dataset_fullname'] = line[4] - this_trait['hmac'] = user_manager.data_hmac('{}:{}'.format(line[4], line[3])) + this_trait['hmac'] = user_manager.data_hmac('{}:{}'.format(line[5], line[3])) this_trait['species'] = line[0] this_trait['group'] = line[1] this_trait['tissue'] = line[2] @@ -76,13 +76,13 @@ class GSearch(object): this_trait['location_repr'] = 'N/A' if (line[8] != "NULL" and line[8] != "") and (line[9] != 0): this_trait['location_repr'] = 'Chr%s: %.6f' % (line[8], float(line[9])) - this_trait['mean'] = round(line[10], 3) + this_trait['mean'] = '%.3f' % line[10] this_trait['LRS_score_repr'] = "N/A" if line[11] != "" and line[11] != None: - this_trait['LRS_score_repr'] = round(line[10], 1) + this_trait['LRS_score_repr'] = '%3.1f' % line[10] this_trait['additive'] = "N/A" if line[14] != "" and line[14] != None: - this_trait['additive'] = round(line[14], 3) + this_trait['additive'] = '%.3f' % line[14] #dataset = create_dataset(line[3], "ProbeSet", get_samplelist=False) #trait_id = line[4] @@ -101,6 +101,7 @@ class GSearch(object): Species.`Name`, InbredSet.`Name`, PublishFreeze.`Name`, + PublishFreeze.`FullName`, PublishXRef.`Id`, Phenotype.`Pre_publication_description`, Phenotype.`Post_publication_description`, @@ -132,34 +133,43 @@ class GSearch(object): re = g.db.execute(sql).fetchall() self.trait_list = [] with Bench("Creating trait objects"): - for line in re: + for i, line in enumerate(re): this_trait = {} - this_trait['name'] = line[3] + this_trait['index'] = i + 1 + this_trait['name'] = str(line[4]) this_trait['dataset'] = line[2] + this_trait['dataset_fullname'] = line[3] + this_trait['hmac'] = user_manager.data_hmac('{}:{}'.format(line[5], line[3])) this_trait['species'] = line[0] this_trait['group'] = line[1] if line[8] != None: - this_trait['description'] = line[5] + this_trait['description'] = line[6] else: - this_trait['description'] = line[4] - this_trait['authors'] = line[6] - this_trait['year'] = line[7] + this_trait['description'] = line[5] + this_trait['authors'] = line[7] + this_trait['year'] = line[8] if this_trait['year'].isdigit(): this_trait['pubmed_text'] = this_trait['year'] else: this_trait['pubmed_text'] = "N/A" - if line[8] != "" and line[8] != None: + if line[9] != "" and line[9] != None: this_trait['pubmed_link'] = webqtlConfig.PUBMEDLINK_URL % line[8] else: this_trait['pubmed_link'] = "N/A" this_trait['LRS_score_repr'] = "N/A" - if line[9] != "" and line[9] != None: - this_trait['LRS_score_repr'] = '%3.1f' % line[9] + if line[10] != "" and line[10] != None: + this_trait['LRS_score_repr'] = '%3.1f' % line[10] this_trait['additive'] = "N/A" - if line[10] != "": - this_trait['additive'] = line[10] + if line[11] != "" and line[11] != None: + this_trait['additive'] = '%.3f' % line[11] #dataset = create_dataset(line[2], "Publish") #trait_id = line[3] #this_trait = GeneralTrait(dataset=dataset, name=trait_id, get_qtl_info=True, get_sample_info=False) + this_trait['max_lrs_text'] = "N/A" + if this_trait['dataset'] == this_trait['group'] + "Publish": + trait_ob = GeneralTrait(dataset_name=this_trait['dataset'], name=this_trait['name'], get_qtl_info=True, get_sample_info=False) + if trait_ob.locus_chr != "" and trait_ob.locus_mb != "": + this_trait['max_lrs_text'] = "Chr" + str(trait_ob.locus_chr) + ": " + str(trait_ob.locus_mb) + self.trait_list.append(this_trait) diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py index 171fd0f9..c67063b0 100644 --- a/wqflask/wqflask/search_results.py +++ b/wqflask/wqflask/search_results.py @@ -23,6 +23,8 @@ from wqflask import do_search from utility import webqtlUtil,tools from db import webqtlDatabaseFunction +from wqflask import user_manager + from flask import render_template from utility import formatting @@ -87,37 +89,63 @@ views.py). the "search" function """ - self.trait_list = [] + trait_list = [] json_trait_list = [] species = webqtlDatabaseFunction.retrieve_species(self.dataset.group.name) # result_set represents the results for each search term; a search of # "shh grin2b" would have two sets of results, one for each term logger.debug("self.results is:", pf(self.results)) + for index, result in enumerate(self.results): if not result: continue #### Excel file needs to be generated #### - #logger.debug("foo locals are:", locals()) + trait_dict = {} trait_id = result[0] + trait_dict['index'] = index + 1 this_trait = trait.GeneralTrait(dataset=self.dataset, name=trait_id, get_qtl_info=True, get_sample_info=False) - self.trait_list.append(this_trait) - json_trait_list.append(trait.jsonable_table_row(this_trait, self.dataset.name, index + 1)) - - self.json_trait_list = json.dumps(json_trait_list) - - #def get_group_species_tree(self): - # self.species_groups = collections.default_dict(list) - # for key in self.results: - # for item in self.results[key]: - # self.species_groups[item['result_fields']['species']].append( - # item['result_fields']['group_name']) + trait_dict['name'] = this_trait.name + trait_dict['dataset'] = this_trait.dataset.name + trait_dict['hmac'] = user_manager.data_hmac('{}:{}'.format(this_trait.name, this_trait.dataset.name)) + if this_trait.dataset.type == "ProbeSet": + trait_dict['symbol'] = this_trait.symbol + trait_dict['description'] = this_trait.description_display + trait_dict['location'] = this_trait.location_repr + trait_dict['mean'] = "N/A" + trait_dict['additive'] = "N/A" + if this_trait.mean != "": + trait_dict['mean'] = '%.3f' % this_trait.mean + trait_dict['lrs_score'] = this_trait.LRS_score_repr + trait_dict['lrs_location'] = this_trait.LRS_location_repr + if this_trait.additive != "": + trait_dict['additive'] = '%.3f' % this_trait.additive + elif this_trait.dataset.type == "Geno": + trait_dict['location'] = this_trait.location_repr + elif this_trait.dataset.type == "Publish": + trait_dict['description'] = this_trait.description_display + trait_dict['authors'] = this_trait.authors + trait_dict['pubmed_id'] = "N/A" + if this_trait.pubmed_id: + trait_dict['pubmed_id'] = this_trait.pubmed_id + trait_dict['pubmed_link'] = this_trait.pubmed_link + trait_dict['pubmed_text'] = this_trait.pubmed_text + trait_dict['lrs_score'] = this_trait.LRS_score_repr + trait_dict['lrs_location'] = this_trait.LRS_location_repr + trait_dict['additive'] = "N/A" + if this_trait.additive != "": + trait_dict['additive'] = '%.3f' % this_trait.additive + trait_list.append(trait_dict) + #json_trait_list.append(trait.jsonable_table_row(this_trait, self.dataset.name, index + 1)) + + self.trait_list = json.dumps(trait_list) + #self.json_trait_list = json.dumps(json_trait_list) def search(self): - """This function sets up the actual search query in the form of a SQL -statement and executes + """ + This function sets up the actual search query in the form of a SQL statement and executes """ self.search_terms = parser.parse(self.search_terms) diff --git a/wqflask/wqflask/static/new/css/typeahead-bootstrap.css b/wqflask/wqflask/static/new/css/typeahead-bootstrap.css new file mode 100644 index 00000000..87dd4b5d --- /dev/null +++ b/wqflask/wqflask/static/new/css/typeahead-bootstrap.css @@ -0,0 +1,94 @@ +span.twitter-typeahead .tt-menu, +span.twitter-typeahead .tt-dropdown-menu { + cursor: pointer; + position: absolute; + top: 100%; + left: 0; + z-index: 1000; + display: none; + float: left; + min-width: 160px; + padding: 5px 0; + margin: 2px 0 0; + list-style: none; + font-size: 14px; + text-align: left; + background-color: #ffffff; + border: 1px solid #cccccc; + border: 1px solid rgba(0, 0, 0, 0.15); + border-radius: 4px; + -webkit-box-shadow: 0 6px 12px rgba(0, 0, 0, 0.175); + box-shadow: 0 6px 12px rgba(0, 0, 0, 0.175); + background-clip: padding-box; +} +span.twitter-typeahead .tt-suggestion { + display: block; + padding: 3px 20px; + clear: both; + font-weight: normal; + line-height: 1.42857143; + color: #333333; + white-space: nowrap; +} +span.twitter-typeahead .tt-suggestion.tt-cursor, +span.twitter-typeahead .tt-suggestion:hover, +span.twitter-typeahead .tt-suggestion:focus { + color: #ffffff; + text-decoration: none; + outline: 0; + background-color: #337ab7; +} +.input-group.input-group-lg span.twitter-typeahead .form-control { + height: 46px; + padding: 10px 16px; + font-size: 18px; + line-height: 1.3333333; + border-radius: 6px; +} +.input-group.input-group-sm span.twitter-typeahead .form-control { + height: 30px; + padding: 5px 10px; + font-size: 12px; + line-height: 1.5; + border-radius: 3px; +} +span.twitter-typeahead { + width: 100%; +} +.input-group span.twitter-typeahead { + display: block !important; + height: 34px; +} +.input-group span.twitter-typeahead .tt-menu, +.input-group span.twitter-typeahead .tt-dropdown-menu { + top: 32px !important; +} +.input-group span.twitter-typeahead:not(:first-child):not(:last-child) .form-control { + border-radius: 0; +} +.input-group span.twitter-typeahead:first-child .form-control { + border-top-left-radius: 4px; + border-bottom-left-radius: 4px; + border-top-right-radius: 0; + border-bottom-right-radius: 0; +} +.input-group span.twitter-typeahead:last-child .form-control { + border-top-left-radius: 0; + border-bottom-left-radius: 0; + border-top-right-radius: 4px; + border-bottom-right-radius: 4px; +} +.input-group.input-group-sm span.twitter-typeahead { + height: 30px; +} +.input-group.input-group-sm span.twitter-typeahead .tt-menu, +.input-group.input-group-sm span.twitter-typeahead .tt-dropdown-menu { + top: 30px !important; +} +.input-group.input-group-lg span.twitter-typeahead { + height: 46px; +} +.input-group.input-group-lg span.twitter-typeahead .tt-menu, +.input-group.input-group-lg span.twitter-typeahead .tt-dropdown-menu { + top: 46px !important; +} \ No newline at end of file diff --git a/wqflask/wqflask/static/new/javascript/typeahead_rn6.json b/wqflask/wqflask/static/new/javascript/typeahead_rn6.json new file mode 100644 index 00000000..1889d8a2 --- /dev/null +++ b/wqflask/wqflask/static/new/javascript/typeahead_rn6.json @@ -0,0 +1 @@ +var rat_genes = 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val : JSON.stringify(val); + }, + noop: function() {} + }; + }(); + var VERSION = "0.11.1"; + var tokenizers = function() { + "use strict"; + return { + nonword: nonword, + whitespace: whitespace, + obj: { + nonword: getObjTokenizer(nonword), + whitespace: getObjTokenizer(whitespace) + } + }; + function whitespace(str) { + str = _.toStr(str); + return str ? str.split(/\s+/) : []; + } + function nonword(str) { + str = _.toStr(str); + return str ? str.split(/\W+/) : []; + } + function getObjTokenizer(tokenizer) { + return function setKey(keys) { + keys = _.isArray(keys) ? keys : [].slice.call(arguments, 0); + return function tokenize(o) { + var tokens = []; + _.each(keys, function(k) { + tokens = tokens.concat(tokenizer(_.toStr(o[k]))); + }); + return tokens; + }; + }; + } + }(); + var LruCache = function() { + "use strict"; + function LruCache(maxSize) { + this.maxSize = _.isNumber(maxSize) ? maxSize : 100; + this.reset(); + if (this.maxSize <= 0) { + this.set = this.get = $.noop; + } + } + _.mixin(LruCache.prototype, { + set: function set(key, val) { + var tailItem = this.list.tail, node; + if (this.size >= this.maxSize) { + this.list.remove(tailItem); + delete this.hash[tailItem.key]; + this.size--; + } + if (node = this.hash[key]) { + node.val = val; + this.list.moveToFront(node); + } else { + node = new Node(key, val); + this.list.add(node); + this.hash[key] = node; + this.size++; + } + }, + get: function get(key) { + var node = this.hash[key]; + if (node) { + this.list.moveToFront(node); + return node.val; + } + }, + reset: function reset() { + this.size = 0; + this.hash = {}; + this.list = new List(); + } + }); + function List() { + this.head = this.tail = null; + } + _.mixin(List.prototype, { + add: function add(node) { + if (this.head) { + node.next = this.head; + this.head.prev = node; + } + this.head = node; + this.tail = this.tail || node; + }, + remove: function remove(node) { + node.prev ? node.prev.next = node.next : this.head = node.next; + node.next ? node.next.prev = node.prev : this.tail = node.prev; + }, + moveToFront: function(node) { + this.remove(node); + this.add(node); + } + }); + function Node(key, val) { + this.key = key; + this.val = val; + this.prev = this.next = null; + } + return LruCache; + }(); + var PersistentStorage = function() { + "use strict"; + var LOCAL_STORAGE; + try { + LOCAL_STORAGE = window.localStorage; + LOCAL_STORAGE.setItem("~~~", "!"); + LOCAL_STORAGE.removeItem("~~~"); + } catch (err) { + LOCAL_STORAGE = null; + } + function PersistentStorage(namespace, override) { + this.prefix = [ "__", namespace, "__" ].join(""); + this.ttlKey = "__ttl__"; + this.keyMatcher = new RegExp("^" + _.escapeRegExChars(this.prefix)); + this.ls = override || LOCAL_STORAGE; + !this.ls && this._noop(); + } + _.mixin(PersistentStorage.prototype, { + _prefix: function(key) { + return this.prefix + key; + }, + _ttlKey: function(key) { + return this._prefix(key) + this.ttlKey; + }, + _noop: function() { + this.get = this.set = this.remove = this.clear = this.isExpired = _.noop; + }, + _safeSet: function(key, val) { + try { + this.ls.setItem(key, val); + } catch (err) { + if (err.name === "QuotaExceededError") { + this.clear(); + this._noop(); + } + } + }, + get: function(key) { + if (this.isExpired(key)) { + this.remove(key); + } + return decode(this.ls.getItem(this._prefix(key))); + }, + set: function(key, val, ttl) { + if (_.isNumber(ttl)) { + this._safeSet(this._ttlKey(key), encode(now() + ttl)); + } else { + this.ls.removeItem(this._ttlKey(key)); + } + return this._safeSet(this._prefix(key), encode(val)); + }, + remove: function(key) { + this.ls.removeItem(this._ttlKey(key)); + this.ls.removeItem(this._prefix(key)); + return this; + }, + clear: function() { + var i, keys = gatherMatchingKeys(this.keyMatcher); + for (i = keys.length; i--; ) { + this.remove(keys[i]); + } + return this; + }, + isExpired: function(key) { + var ttl = decode(this.ls.getItem(this._ttlKey(key))); + return _.isNumber(ttl) && now() > ttl ? true : false; + } + }); + return PersistentStorage; + function now() { + return new Date().getTime(); + } + function encode(val) { + return JSON.stringify(_.isUndefined(val) ? null : val); + } + function decode(val) { + return $.parseJSON(val); + } + function gatherMatchingKeys(keyMatcher) { + var i, key, keys = [], len = LOCAL_STORAGE.length; + for (i = 0; i < len; i++) { + if ((key = LOCAL_STORAGE.key(i)).match(keyMatcher)) { + keys.push(key.replace(keyMatcher, "")); + } + } + return keys; + } + }(); + var Transport = function() { + "use strict"; + var pendingRequestsCount = 0, pendingRequests = {}, maxPendingRequests = 6, sharedCache = new LruCache(10); + function Transport(o) { + o = o || {}; + this.cancelled = false; + this.lastReq = null; + this._send = o.transport; + this._get = o.limiter ? o.limiter(this._get) : this._get; + this._cache = o.cache === false ? new LruCache(0) : sharedCache; + } + Transport.setMaxPendingRequests = function setMaxPendingRequests(num) { + maxPendingRequests = num; + }; + Transport.resetCache = function resetCache() { + sharedCache.reset(); + }; + _.mixin(Transport.prototype, { + _fingerprint: function fingerprint(o) { + o = o || {}; + return o.url + o.type + $.param(o.data || {}); + }, + _get: function(o, cb) { + var that = this, fingerprint, jqXhr; + fingerprint = this._fingerprint(o); + if (this.cancelled || fingerprint !== this.lastReq) { + return; + } + if (jqXhr = pendingRequests[fingerprint]) { + jqXhr.done(done).fail(fail); + } else if (pendingRequestsCount < maxPendingRequests) { + pendingRequestsCount++; + pendingRequests[fingerprint] = this._send(o).done(done).fail(fail).always(always); + } else { + this.onDeckRequestArgs = [].slice.call(arguments, 0); + } + function done(resp) { + cb(null, resp); + that._cache.set(fingerprint, resp); + } + function fail() { + cb(true); + } + function always() { + pendingRequestsCount--; + delete pendingRequests[fingerprint]; + if (that.onDeckRequestArgs) { + that._get.apply(that, that.onDeckRequestArgs); + that.onDeckRequestArgs = null; + } + } + }, + get: function(o, cb) { + var resp, fingerprint; + cb = cb || $.noop; + o = _.isString(o) ? { + url: o + } : o || {}; + fingerprint = this._fingerprint(o); + this.cancelled = false; + this.lastReq = fingerprint; + if (resp = this._cache.get(fingerprint)) { + cb(null, resp); + } else { + this._get(o, cb); + } + }, + cancel: function() { + this.cancelled = true; + } + }); + return Transport; + }(); + var SearchIndex = window.SearchIndex = function() { + "use strict"; + var CHILDREN = "c", IDS = "i"; + function SearchIndex(o) { + o = o || {}; + if (!o.datumTokenizer || !o.queryTokenizer) { + $.error("datumTokenizer and queryTokenizer are both required"); + } + this.identify = o.identify || _.stringify; + this.datumTokenizer = o.datumTokenizer; + this.queryTokenizer = o.queryTokenizer; + this.reset(); + } + _.mixin(SearchIndex.prototype, { + bootstrap: function bootstrap(o) { + this.datums = o.datums; + this.trie = o.trie; + }, + add: function(data) { + var that = this; + data = _.isArray(data) ? data : [ data ]; + _.each(data, function(datum) { + var id, tokens; + that.datums[id = that.identify(datum)] = datum; + tokens = normalizeTokens(that.datumTokenizer(datum)); + _.each(tokens, function(token) { + var node, chars, ch; + node = that.trie; + chars = token.split(""); + while (ch = chars.shift()) { + node = node[CHILDREN][ch] || (node[CHILDREN][ch] = newNode()); + node[IDS].push(id); + } + }); + }); + }, + get: function get(ids) { + var that = this; + return _.map(ids, function(id) { + return that.datums[id]; + }); + }, + search: function search(query) { + var that = this, tokens, matches; + tokens = normalizeTokens(this.queryTokenizer(query)); + _.each(tokens, function(token) { + var node, chars, ch, ids; + if (matches && matches.length === 0) { + return false; + } + node = that.trie; + chars = token.split(""); + while (node && (ch = chars.shift())) { + node = node[CHILDREN][ch]; + } + if (node && chars.length === 0) { + ids = node[IDS].slice(0); + matches = matches ? getIntersection(matches, ids) : ids; + } else { + matches = []; + return false; + } + }); + return matches ? _.map(unique(matches), function(id) { + return that.datums[id]; + }) : []; + }, + all: function all() { + var values = []; + for (var key in this.datums) { + values.push(this.datums[key]); + } + return values; + }, + reset: function reset() { + this.datums = {}; + this.trie = newNode(); + }, + serialize: function serialize() { + return { + datums: this.datums, + trie: this.trie + }; + } + }); + return SearchIndex; + function normalizeTokens(tokens) { + tokens = _.filter(tokens, function(token) { + return !!token; + }); + tokens = _.map(tokens, function(token) { + return token.toLowerCase(); + }); + return tokens; + } + function newNode() { + var node = {}; + node[IDS] = []; + node[CHILDREN] = {}; + return node; + } + function unique(array) { + var seen = {}, uniques = []; + for (var i = 0, len = array.length; i < len; i++) { + if (!seen[array[i]]) { + seen[array[i]] = true; + uniques.push(array[i]); + } + } + return uniques; + } + function getIntersection(arrayA, arrayB) { + var ai = 0, bi = 0, intersection = []; + arrayA = arrayA.sort(); + arrayB = arrayB.sort(); + var lenArrayA = arrayA.length, lenArrayB = arrayB.length; + while (ai < lenArrayA && bi < lenArrayB) { + if (arrayA[ai] < arrayB[bi]) { + ai++; + } else if (arrayA[ai] > arrayB[bi]) { + bi++; + } else { + intersection.push(arrayA[ai]); + ai++; + bi++; + } + } + return intersection; + } + }(); + var Prefetch = function() { + "use strict"; + var keys; + keys = { + data: "data", + protocol: "protocol", + thumbprint: "thumbprint" + }; + function Prefetch(o) { + this.url = o.url; + this.ttl = o.ttl; + this.cache = o.cache; + this.prepare = o.prepare; + this.transform = o.transform; + this.transport = o.transport; + this.thumbprint = o.thumbprint; + this.storage = new PersistentStorage(o.cacheKey); + } + _.mixin(Prefetch.prototype, { + _settings: function settings() { + return { + url: this.url, + type: "GET", + dataType: "json" + }; + }, + store: function store(data) { + if (!this.cache) { + return; + } + this.storage.set(keys.data, data, this.ttl); + this.storage.set(keys.protocol, location.protocol, this.ttl); + this.storage.set(keys.thumbprint, this.thumbprint, this.ttl); + }, + fromCache: function fromCache() { + var stored = {}, isExpired; + if (!this.cache) { + return null; + } + stored.data = this.storage.get(keys.data); + stored.protocol = this.storage.get(keys.protocol); + stored.thumbprint = this.storage.get(keys.thumbprint); + isExpired = stored.thumbprint !== this.thumbprint || stored.protocol !== location.protocol; + return stored.data && !isExpired ? stored.data : null; + }, + fromNetwork: function(cb) { + var that = this, settings; + if (!cb) { + return; + } + settings = this.prepare(this._settings()); + this.transport(settings).fail(onError).done(onResponse); + function onError() { + cb(true); + } + function onResponse(resp) { + cb(null, that.transform(resp)); + } + }, + clear: function clear() { + this.storage.clear(); + return this; + } + }); + return Prefetch; + }(); + var Remote = function() { + "use strict"; + function Remote(o) { + this.url = o.url; + this.prepare = o.prepare; + this.transform = o.transform; + this.transport = new Transport({ + cache: o.cache, + limiter: o.limiter, + transport: o.transport + }); + } + _.mixin(Remote.prototype, { + _settings: function settings() { + return { + url: this.url, + type: "GET", + dataType: "json" + }; + }, + get: function get(query, cb) { + var that = this, settings; + if (!cb) { + return; + } + query = query || ""; + settings = this.prepare(query, this._settings()); + return this.transport.get(settings, onResponse); + function onResponse(err, resp) { + err ? cb([]) : cb(that.transform(resp)); + } + }, + cancelLastRequest: function cancelLastRequest() { + this.transport.cancel(); + } + }); + return Remote; + }(); + var oParser = function() { + "use strict"; + return function parse(o) { + var defaults, sorter; + defaults = { + initialize: true, + identify: _.stringify, + datumTokenizer: null, + queryTokenizer: null, + sufficient: 5, + sorter: null, + local: [], + prefetch: null, + remote: null + }; + o = _.mixin(defaults, o || {}); + !o.datumTokenizer && $.error("datumTokenizer is required"); + !o.queryTokenizer && $.error("queryTokenizer is required"); + sorter = o.sorter; + o.sorter = sorter ? function(x) { + return x.sort(sorter); + } : _.identity; + o.local = _.isFunction(o.local) ? o.local() : o.local; + o.prefetch = parsePrefetch(o.prefetch); + o.remote = parseRemote(o.remote); + return o; + }; + function parsePrefetch(o) { + var defaults; + if (!o) { + return null; + } + defaults = { + url: null, + ttl: 24 * 60 * 60 * 1e3, + cache: true, + cacheKey: null, + thumbprint: "", + prepare: _.identity, + transform: _.identity, + transport: null + }; + o = _.isString(o) ? { + url: o + } : o; + o = _.mixin(defaults, o); + !o.url && $.error("prefetch requires url to be set"); + o.transform = o.filter || o.transform; + o.cacheKey = o.cacheKey || o.url; + o.thumbprint = VERSION + o.thumbprint; + o.transport = o.transport ? callbackToDeferred(o.transport) : $.ajax; + return o; + } + function parseRemote(o) { + var defaults; + if (!o) { + return; + } + defaults = { + url: null, + cache: true, + prepare: null, + replace: null, + wildcard: null, + limiter: null, + rateLimitBy: "debounce", + rateLimitWait: 300, + transform: _.identity, + transport: null + }; + o = _.isString(o) ? { + url: o + } : o; + o = _.mixin(defaults, o); + !o.url && $.error("remote requires url to be set"); + o.transform = o.filter || o.transform; + o.prepare = toRemotePrepare(o); + o.limiter = toLimiter(o); + o.transport = o.transport ? callbackToDeferred(o.transport) : $.ajax; + delete o.replace; + delete o.wildcard; + delete o.rateLimitBy; + delete o.rateLimitWait; + return o; + } + function toRemotePrepare(o) { + var prepare, replace, wildcard; + prepare = o.prepare; + replace = o.replace; + wildcard = o.wildcard; + if (prepare) { + return prepare; + } + if (replace) { + prepare = prepareByReplace; + } else if (o.wildcard) { + prepare = prepareByWildcard; + } else { + prepare = idenityPrepare; + } + return prepare; + function prepareByReplace(query, settings) { + settings.url = replace(settings.url, query); + return settings; + } + function prepareByWildcard(query, settings) { + settings.url = settings.url.replace(wildcard, encodeURIComponent(query)); + return settings; + } + function idenityPrepare(query, settings) { + return settings; + } + } + function toLimiter(o) { + var limiter, method, wait; + limiter = o.limiter; + method = o.rateLimitBy; + wait = o.rateLimitWait; + if (!limiter) { + limiter = /^throttle$/i.test(method) ? throttle(wait) : debounce(wait); + } + return limiter; + function debounce(wait) { + return function debounce(fn) { + return _.debounce(fn, wait); + }; + } + function throttle(wait) { + return function throttle(fn) { + return _.throttle(fn, wait); + }; + } + } + function callbackToDeferred(fn) { + return function wrapper(o) { + var deferred = $.Deferred(); + fn(o, onSuccess, onError); + return deferred; + function onSuccess(resp) { + _.defer(function() { + deferred.resolve(resp); + }); + } + function onError(err) { + _.defer(function() { + deferred.reject(err); + }); + } + }; + } + }(); + var Bloodhound = function() { + "use strict"; + var old; + old = window && window.Bloodhound; + function Bloodhound(o) { + o = oParser(o); + this.sorter = o.sorter; + this.identify = o.identify; + this.sufficient = o.sufficient; + this.local = o.local; + this.remote = o.remote ? new Remote(o.remote) : null; + this.prefetch = o.prefetch ? new Prefetch(o.prefetch) : null; + this.index = new SearchIndex({ + identify: this.identify, + datumTokenizer: o.datumTokenizer, + queryTokenizer: o.queryTokenizer + }); + o.initialize !== false && this.initialize(); + } + Bloodhound.noConflict = function noConflict() { + window && (window.Bloodhound = old); + return Bloodhound; + }; + Bloodhound.tokenizers = tokenizers; + _.mixin(Bloodhound.prototype, { + __ttAdapter: function ttAdapter() { + var that = this; + return this.remote ? withAsync : withoutAsync; + function withAsync(query, sync, async) { + return that.search(query, sync, async); + } + function withoutAsync(query, sync) { + return that.search(query, sync); + } + }, + _loadPrefetch: function loadPrefetch() { + var that = this, deferred, serialized; + deferred = $.Deferred(); + if (!this.prefetch) { + deferred.resolve(); + } else if (serialized = this.prefetch.fromCache()) { + this.index.bootstrap(serialized); + deferred.resolve(); + } else { + this.prefetch.fromNetwork(done); + } + return deferred.promise(); + function done(err, data) { + if (err) { + return deferred.reject(); + } + that.add(data); + that.prefetch.store(that.index.serialize()); + deferred.resolve(); + } + }, + _initialize: function initialize() { + var that = this, deferred; + this.clear(); + (this.initPromise = this._loadPrefetch()).done(addLocalToIndex); + return this.initPromise; + function addLocalToIndex() { + that.add(that.local); + } + }, + initialize: function initialize(force) { + return !this.initPromise || force ? this._initialize() : this.initPromise; + }, + add: function add(data) { + this.index.add(data); + return this; + }, + get: function get(ids) { + ids = _.isArray(ids) ? ids : [].slice.call(arguments); + return this.index.get(ids); + }, + search: function search(query, sync, async) { + var that = this, local; + local = this.sorter(this.index.search(query)); + sync(this.remote ? local.slice() : local); + if (this.remote && local.length < this.sufficient) { + this.remote.get(query, processRemote); + } else if (this.remote) { + this.remote.cancelLastRequest(); + } + return this; + function processRemote(remote) { + var nonDuplicates = []; + _.each(remote, function(r) { + !_.some(local, function(l) { + return that.identify(r) === that.identify(l); + }) && nonDuplicates.push(r); + }); + async && async(nonDuplicates); + } + }, + all: function all() { + return this.index.all(); + }, + clear: function clear() { + this.index.reset(); + return this; + }, + clearPrefetchCache: function clearPrefetchCache() { + this.prefetch && this.prefetch.clear(); + return this; + }, + clearRemoteCache: function clearRemoteCache() { + Transport.resetCache(); + return this; + }, + ttAdapter: function ttAdapter() { + return this.__ttAdapter(); + } + }); + return Bloodhound; + }(); + return Bloodhound; +}); + +(function(root, factory) { + if (typeof define === "function" && define.amd) { + define("typeahead.js", [ "jquery" ], function(a0) { + return factory(a0); + }); + } else if (typeof exports === "object") { + module.exports = factory(require("jquery")); + } else { + factory(jQuery); + } +})(this, function($) { + var _ = function() { + "use strict"; + return { + isMsie: function() { + return /(msie|trident)/i.test(navigator.userAgent) ? navigator.userAgent.match(/(msie |rv:)(\d+(.\d+)?)/i)[2] : false; + }, + isBlankString: function(str) { + return !str || /^\s*$/.test(str); + }, + escapeRegExChars: function(str) { + return str.replace(/[\-\[\]\/\{\}\(\)\*\+\?\.\\\^\$\|]/g, "\\$&"); + }, + isString: function(obj) { + return typeof obj === "string"; + }, + isNumber: function(obj) { + return typeof obj === "number"; + }, + isArray: $.isArray, + isFunction: $.isFunction, + isObject: $.isPlainObject, + isUndefined: function(obj) { + return typeof obj === "undefined"; + }, + isElement: function(obj) { + return !!(obj && obj.nodeType === 1); + }, + isJQuery: function(obj) { + return obj instanceof $; + }, + toStr: function toStr(s) { + return _.isUndefined(s) || s === null ? "" : s + ""; + }, + bind: $.proxy, + each: function(collection, cb) { + $.each(collection, reverseArgs); + function reverseArgs(index, value) { + return cb(value, index); + } + }, + map: $.map, + filter: $.grep, + every: function(obj, test) { + var result = true; + if (!obj) { + return result; + } + $.each(obj, function(key, val) { + if (!(result = test.call(null, val, key, obj))) { + return false; + } + }); + return !!result; + }, + some: function(obj, test) { + var result = false; + if (!obj) { + return result; + } + $.each(obj, function(key, val) { + if (result = test.call(null, val, key, obj)) { + return false; + } + }); + return !!result; + }, + mixin: $.extend, + identity: function(x) { + return x; + }, + clone: function(obj) { + return $.extend(true, {}, obj); + }, + getIdGenerator: function() { + var counter = 0; + return function() { + return counter++; + }; + }, + templatify: function templatify(obj) { + return $.isFunction(obj) ? obj : template; + function template() { + return String(obj); + } + }, + defer: function(fn) { + setTimeout(fn, 0); + }, + debounce: function(func, wait, immediate) { + var timeout, result; + return function() { + var context = this, args = arguments, later, callNow; + later = function() { + timeout = null; + if (!immediate) { + result = func.apply(context, args); + } + }; + callNow = immediate && !timeout; + clearTimeout(timeout); + timeout = setTimeout(later, wait); + if (callNow) { + result = func.apply(context, args); + } + return result; + }; + }, + throttle: function(func, wait) { + var context, args, timeout, result, previous, later; + previous = 0; + later = function() { + previous = new Date(); + timeout = null; + result = func.apply(context, args); + }; + return function() { + var now = new Date(), remaining = wait - (now - previous); + context = this; + args = arguments; + if (remaining <= 0) { + clearTimeout(timeout); + timeout = null; + previous = now; + result = func.apply(context, args); + } else if (!timeout) { + timeout = setTimeout(later, remaining); + } + return result; + }; + }, + stringify: function(val) { + return _.isString(val) ? val : JSON.stringify(val); + }, + noop: function() {} + }; + }(); + var WWW = function() { + "use strict"; + var defaultClassNames = { + wrapper: "twitter-typeahead", + input: "tt-input", + hint: "tt-hint", + menu: "tt-menu", + dataset: "tt-dataset", + suggestion: "tt-suggestion", + selectable: "tt-selectable", + empty: "tt-empty", + open: "tt-open", + cursor: "tt-cursor", + highlight: "tt-highlight" + }; + return build; + function build(o) { + var www, classes; + classes = _.mixin({}, defaultClassNames, o); + www = { + css: buildCss(), + classes: classes, + html: buildHtml(classes), + selectors: buildSelectors(classes) + }; + return { + css: www.css, + html: www.html, + classes: www.classes, + selectors: www.selectors, + mixin: function(o) { + _.mixin(o, www); + } + }; + } + function buildHtml(c) { + return { + wrapper: '', + menu: '
' + }; + } + function buildSelectors(classes) { + var selectors = {}; + _.each(classes, function(v, k) { + selectors[k] = "." + v; + }); + return selectors; + } + function buildCss() { + var css = { + wrapper: { + position: "relative", + display: "inline-block" + }, + hint: { + position: "absolute", + top: "0", + left: "0", + borderColor: "transparent", + boxShadow: "none", + opacity: "1" + }, + input: { + position: "relative", + verticalAlign: "top", + backgroundColor: "transparent" + }, + inputWithNoHint: { + position: "relative", + verticalAlign: "top" + }, + menu: { + position: "absolute", + top: "100%", + left: "0", + zIndex: "100", + display: "none" + }, + ltr: { + left: "0", + right: "auto" + }, + rtl: { + left: "auto", + right: " 0" + } + }; + if (_.isMsie()) { + _.mixin(css.input, { + backgroundImage: "url(data:image/gif;base64,R0lGODlhAQABAIAAAAAAAP///yH5BAEAAAAALAAAAAABAAEAAAIBRAA7)" + }); + } + return css; + } + }(); + var EventBus = function() { + "use strict"; + var namespace, deprecationMap; + namespace = "typeahead:"; + deprecationMap = { + render: "rendered", + cursorchange: "cursorchanged", + select: "selected", + autocomplete: "autocompleted" + }; + function EventBus(o) { + if (!o || !o.el) { + $.error("EventBus initialized without el"); + } + this.$el = $(o.el); + } + _.mixin(EventBus.prototype, { + _trigger: function(type, args) { + var $e; + $e = $.Event(namespace + type); + (args = args || []).unshift($e); + this.$el.trigger.apply(this.$el, args); + return $e; + }, + before: function(type) { + var args, $e; + args = [].slice.call(arguments, 1); + $e = this._trigger("before" + type, args); + return $e.isDefaultPrevented(); + }, + trigger: function(type) { + var deprecatedType; + this._trigger(type, [].slice.call(arguments, 1)); + if (deprecatedType = deprecationMap[type]) { + this._trigger(deprecatedType, [].slice.call(arguments, 1)); + } + } + }); + return EventBus; + }(); + var EventEmitter = function() { + "use strict"; + var splitter = /\s+/, nextTick = getNextTick(); + return { + onSync: onSync, + onAsync: onAsync, + off: off, + trigger: trigger + }; + function on(method, types, cb, context) { + var type; + if (!cb) { + return this; + } + types = types.split(splitter); + cb = context ? bindContext(cb, context) : cb; + this._callbacks = this._callbacks || {}; + while (type = types.shift()) { + this._callbacks[type] = this._callbacks[type] || { + sync: [], + async: [] + }; + this._callbacks[type][method].push(cb); + } + return this; + } + function onAsync(types, cb, context) { + return on.call(this, "async", types, cb, context); + } + function onSync(types, cb, context) { + return on.call(this, "sync", types, cb, context); + } + function off(types) { + var type; + if (!this._callbacks) { + return this; + } + types = types.split(splitter); + while (type = types.shift()) { + delete this._callbacks[type]; + } + return this; + } + function trigger(types) { + var type, callbacks, args, syncFlush, asyncFlush; + if (!this._callbacks) { + return this; + } + types = types.split(splitter); + args = [].slice.call(arguments, 1); + while ((type = types.shift()) && (callbacks = this._callbacks[type])) { + syncFlush = getFlush(callbacks.sync, this, [ type ].concat(args)); + asyncFlush = getFlush(callbacks.async, this, [ type ].concat(args)); + syncFlush() && nextTick(asyncFlush); + } + return this; + } + function getFlush(callbacks, context, args) { + return flush; + function flush() { + var cancelled; + for (var i = 0, len = callbacks.length; !cancelled && i < len; i += 1) { + cancelled = callbacks[i].apply(context, args) === false; + } + return !cancelled; + } + } + function getNextTick() { + var nextTickFn; + if (window.setImmediate) { + nextTickFn = function nextTickSetImmediate(fn) { + setImmediate(function() { + fn(); + }); + }; + } else { + nextTickFn = function nextTickSetTimeout(fn) { + setTimeout(function() { + fn(); + }, 0); + }; + } + return nextTickFn; + } + function bindContext(fn, context) { + return fn.bind ? fn.bind(context) : function() { + fn.apply(context, [].slice.call(arguments, 0)); + }; + } + }(); + var highlight = function(doc) { + "use strict"; + var defaults = { + node: null, + pattern: null, + tagName: "strong", + className: null, + wordsOnly: false, + caseSensitive: false + }; + return function hightlight(o) { + var regex; + o = _.mixin({}, defaults, o); + if (!o.node || !o.pattern) { + return; + } + o.pattern = _.isArray(o.pattern) ? o.pattern : [ o.pattern ]; + regex = getRegex(o.pattern, o.caseSensitive, o.wordsOnly); + traverse(o.node, hightlightTextNode); + function hightlightTextNode(textNode) { + var match, patternNode, wrapperNode; + if (match = regex.exec(textNode.data)) { + wrapperNode = doc.createElement(o.tagName); + o.className && (wrapperNode.className = o.className); + patternNode = textNode.splitText(match.index); + patternNode.splitText(match[0].length); + wrapperNode.appendChild(patternNode.cloneNode(true)); + textNode.parentNode.replaceChild(wrapperNode, patternNode); + } + return !!match; + } + function traverse(el, hightlightTextNode) { + var childNode, TEXT_NODE_TYPE = 3; + for (var i = 0; i < el.childNodes.length; i++) { + childNode = el.childNodes[i]; + if (childNode.nodeType === TEXT_NODE_TYPE) { + i += hightlightTextNode(childNode) ? 1 : 0; + } else { + traverse(childNode, hightlightTextNode); + } + } + } + }; + function getRegex(patterns, caseSensitive, wordsOnly) { + var escapedPatterns = [], regexStr; + for (var i = 0, len = patterns.length; i < len; i++) { + escapedPatterns.push(_.escapeRegExChars(patterns[i])); + } + regexStr = wordsOnly ? "\\b(" + escapedPatterns.join("|") + ")\\b" : "(" + escapedPatterns.join("|") + ")"; + return caseSensitive ? new RegExp(regexStr) : new RegExp(regexStr, "i"); + } + }(window.document); + var Input = function() { + "use strict"; + var specialKeyCodeMap; + specialKeyCodeMap = { + 9: "tab", + 27: "esc", + 37: "left", + 39: "right", + 13: "enter", + 38: "up", + 40: "down" + }; + function Input(o, www) { + o = o || {}; + if (!o.input) { + $.error("input is missing"); + } + www.mixin(this); + this.$hint = $(o.hint); + this.$input = $(o.input); + this.query = this.$input.val(); + this.queryWhenFocused = this.hasFocus() ? this.query : null; + this.$overflowHelper = buildOverflowHelper(this.$input); + this._checkLanguageDirection(); + if (this.$hint.length === 0) { + this.setHint = this.getHint = this.clearHint = this.clearHintIfInvalid = _.noop; + } + } + Input.normalizeQuery = function(str) { + return _.toStr(str).replace(/^\s*/g, "").replace(/\s{2,}/g, " "); + }; + _.mixin(Input.prototype, EventEmitter, { + _onBlur: function onBlur() { + this.resetInputValue(); + this.trigger("blurred"); + }, + _onFocus: function onFocus() { + this.queryWhenFocused = this.query; + this.trigger("focused"); + }, + _onKeydown: function onKeydown($e) { + var keyName = specialKeyCodeMap[$e.which || $e.keyCode]; + this._managePreventDefault(keyName, $e); + if (keyName && this._shouldTrigger(keyName, $e)) { + this.trigger(keyName + "Keyed", $e); + } + }, + _onInput: function onInput() { + this._setQuery(this.getInputValue()); + this.clearHintIfInvalid(); + this._checkLanguageDirection(); + }, + _managePreventDefault: function managePreventDefault(keyName, $e) { + var preventDefault; + switch (keyName) { + case "up": + case "down": + preventDefault = !withModifier($e); + break; + + default: + preventDefault = false; + } + preventDefault && $e.preventDefault(); + }, + _shouldTrigger: function shouldTrigger(keyName, $e) { + var trigger; + switch (keyName) { + case "tab": + trigger = !withModifier($e); + break; + + default: + trigger = true; + } + return trigger; + }, + _checkLanguageDirection: function checkLanguageDirection() { + var dir = (this.$input.css("direction") || "ltr").toLowerCase(); + if (this.dir !== dir) { + this.dir = dir; + this.$hint.attr("dir", dir); + this.trigger("langDirChanged", dir); + } + }, + _setQuery: function setQuery(val, silent) { + var areEquivalent, hasDifferentWhitespace; + areEquivalent = areQueriesEquivalent(val, this.query); + hasDifferentWhitespace = areEquivalent ? this.query.length !== val.length : false; + this.query = val; + if (!silent && !areEquivalent) { + this.trigger("queryChanged", this.query); + } else if (!silent && hasDifferentWhitespace) { + this.trigger("whitespaceChanged", this.query); + } + }, + bind: function() { + var that = this, onBlur, onFocus, onKeydown, onInput; + onBlur = _.bind(this._onBlur, this); + onFocus = _.bind(this._onFocus, this); + onKeydown = _.bind(this._onKeydown, this); + onInput = _.bind(this._onInput, this); + this.$input.on("blur.tt", onBlur).on("focus.tt", onFocus).on("keydown.tt", onKeydown); + if (!_.isMsie() || _.isMsie() > 9) { + this.$input.on("input.tt", onInput); + } else { + this.$input.on("keydown.tt keypress.tt cut.tt paste.tt", function($e) { + if (specialKeyCodeMap[$e.which || $e.keyCode]) { + return; + } + _.defer(_.bind(that._onInput, that, $e)); + }); + } + return this; + }, + focus: function focus() { + this.$input.focus(); + }, + blur: function blur() { + this.$input.blur(); + }, + getLangDir: function getLangDir() { + return this.dir; + }, + getQuery: function getQuery() { + return this.query || ""; + }, + setQuery: function setQuery(val, silent) { + this.setInputValue(val); + this._setQuery(val, silent); + }, + hasQueryChangedSinceLastFocus: function hasQueryChangedSinceLastFocus() { + return this.query !== this.queryWhenFocused; + }, + getInputValue: function getInputValue() { + return this.$input.val(); + }, + setInputValue: function setInputValue(value) { + this.$input.val(value); + this.clearHintIfInvalid(); + this._checkLanguageDirection(); + }, + resetInputValue: function resetInputValue() { + this.setInputValue(this.query); + }, + getHint: function getHint() { + return this.$hint.val(); + }, + setHint: function setHint(value) { + this.$hint.val(value); + }, + clearHint: function clearHint() { + this.setHint(""); + }, + clearHintIfInvalid: function clearHintIfInvalid() { + var val, hint, valIsPrefixOfHint, isValid; + val = this.getInputValue(); + hint = this.getHint(); + valIsPrefixOfHint = val !== hint && hint.indexOf(val) === 0; + isValid = val !== "" && valIsPrefixOfHint && !this.hasOverflow(); + !isValid && this.clearHint(); + }, + hasFocus: function hasFocus() { + return this.$input.is(":focus"); + }, + hasOverflow: function hasOverflow() { + var constraint = this.$input.width() - 2; + this.$overflowHelper.text(this.getInputValue()); + return this.$overflowHelper.width() >= constraint; + }, + isCursorAtEnd: function() { + var valueLength, selectionStart, range; + valueLength = this.$input.val().length; + selectionStart = this.$input[0].selectionStart; + if (_.isNumber(selectionStart)) { + return selectionStart === valueLength; + } else if (document.selection) { + range = document.selection.createRange(); + range.moveStart("character", -valueLength); + return valueLength === range.text.length; + } + return true; + }, + destroy: function destroy() { + this.$hint.off(".tt"); + this.$input.off(".tt"); + this.$overflowHelper.remove(); + this.$hint = this.$input = this.$overflowHelper = $("- | Index | -Species | -Group | -Record | -Description | -Authors | -Year | -Max LRS ? | -Additive Effect ? | -
---|
- | {{ loop.index }} | -{{ this_trait.species }} | -{{ this_trait.group }} | -{{ this_trait.name }} | -{{ this_trait.description }} | -{{ this_trait.authors }} | -{{ this_trait.pubmed_text }} | -{% if this_trait.LRS_score_repr != "N/A" %}{{ '%0.1f' % this_trait.LRS_score_repr|float }}{% else %}N/A{% endif %} | -{% if this_trait.additive %}{{ '%0.6f' % this_trait.additive }}{% else %}N/A{% endif %} | -Loading... |
-
-
- | Index | -Species | -Group | -Record | -Description | -Authors | -Year | -Max LRS | -Additive Effect | -
---|
- {% for header in header_fields %} - {% if header == 'Max LRS' %} - | Max LRS ? | - {% elif header == 'Additive Effect' %} -Additive Effect ? | - {% else %} -{{header}} | - {% endif %} - {% endfor %} -
---|---|---|---|
- {% for header in header_fields %} - {% if header == 'Max LRS' %} - | Max LRS ? | - {% elif header == 'Additive Effect' %} -Additive Effect ? | - {% else %} -{{header}} | - {% endif %} - {% endfor %} -Loading... |
+