From 75ef9f817f8b80f6d4bd732bfede2ad575a50fab Mon Sep 17 00:00:00 2001
From: zsloan
Date: Fri, 4 Dec 2020 15:18:18 -0600
Subject: Fixed issue where chromosome names weren't being fetched correctly,
 causing an error in GEMMA

---
 wqflask/wqflask/marker_regression/gemma_mapping.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py
index 02f91a32..16e639dc 100644
--- a/wqflask/wqflask/marker_regression/gemma_mapping.py
+++ b/wqflask/wqflask/marker_regression/gemma_mapping.py
@@ -31,7 +31,8 @@ def run_gemma(this_trait, this_dataset, samples, vals, covariates, use_loco, maf
       gwa_output_filename = this_dataset.group.name + "_GWA_" + ''.join(random.choice(string.ascii_uppercase + string.digits) for _ in range(6))
 
       this_chromosomes = this_dataset.species.chromosomes.chromosomes
-      this_chromosomes_name=[chromosome.name for chromosome in this_chromosomes]
+      this_chromosomes_name=[this_chromosomes[chromosome].name for chromosome in this_chromosomes]
+
 
       chr_list_string=",".join(this_chromosomes_name)
       if covariates != "":
-- 
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