Development and source code on github with issue tracker and documentation. Join the mailing list and find us on IRC (#genenetwork channel). {% if version: %} -
GeneNetwork v{{ version }}
+GeneNetwork {{ version }}
{% endif %}
- GeneNetwork v{{ version }} {{ stack[0] }}
+ GeneNetwork {{ version }} {{ stack[0] }}
{{ message }} (error)
{{ stack[-3] }}
{{ stack[-2] }}
@@ -50,7 +50,7 @@
Toggle full stack trace
- GeneNetwork v{{ version }} {% for line in stack %} {{ line }}
+ GeneNetwork {{ version }} {% for line in stack %} {{ line }}
{% endfor %}
diff --git a/wqflask/wqflask/user_manager.py b/wqflask/wqflask/user_manager.py
index 1e831896..f7fcd2d0 100644
--- a/wqflask/wqflask/user_manager.py
+++ b/wqflask/wqflask/user_manager.py
@@ -46,7 +46,7 @@ from wqflask.database import db_session
from wqflask import model
from utility import Bunch, Struct, after
-from utility.tools import LOG_SQL, LOG_SQLALCHEMY
+from utility.tools import LOG_SQL, LOG_SQL_ALCHEMY
import logging
from utility.logger import getLogger
@@ -69,7 +69,7 @@ class AnonUser(object):
if self.cookie:
logger.debug("already is cookie")
self.anon_id = verify_cookie(self.cookie)
-
+
else:
logger.debug("creating new cookie")
self.anon_id, self.cookie = create_signed_cookie()
@@ -78,17 +78,17 @@ class AnonUser(object):
@after.after_this_request
def set_cookie(response):
response.set_cookie(self.cookie_name, self.cookie)
-
+
def add_collection(self, new_collection):
collection_dict = dict(name = new_collection.name,
created_timestamp = datetime.datetime.utcnow().strftime('%b %d %Y %I:%M%p'),
changed_timestamp = datetime.datetime.utcnow().strftime('%b %d %Y %I:%M%p'),
num_members = new_collection.num_members,
members = new_collection.get_members())
-
+
Redis.set(self.key, json.dumps(collection_dict))
Redis.expire(self.key, 60 * 60 * 24 * 5)
-
+
def delete_collection(self, collection_name):
existing_collections = self.get_collections()
updated_collections = []
@@ -106,7 +106,7 @@ class AnonUser(object):
updated_collections.append(this_collection)
Redis.set(self.key, json.dumps(updated_collections))
-
+
def get_collections(self):
json_collections = Redis.get(self.key)
if json_collections == None or json_collections == "None":
@@ -117,7 +117,7 @@ class AnonUser(object):
collection['created_timestamp'] = datetime.datetime.strptime(collection['created_timestamp'], '%b %d %Y %I:%M%p')
collection['changed_timestamp'] = datetime.datetime.strptime(collection['changed_timestamp'], '%b %d %Y %I:%M%p')
return collections
-
+
def import_traits_to_user(self):
collections_list = json.loads(Redis.get(self.key))
for collection in collections_list:
@@ -131,7 +131,7 @@ class AnonUser(object):
uc.members = json.dumps(collection['members'])
db_session.add(uc)
db_session.commit()
-
+
def display_num_collections(self):
"""
Returns the number of collections or a blank string if there are zero.
@@ -217,7 +217,7 @@ class UserSession(object):
"""Actual sqlalchemy record"""
# Only look it up once if needed, then store it
try:
- if LOG_SQLALCHEMY:
+ if LOG_SQL_ALCHEMY:
logging.getLogger('sqlalchemy.pool').setLevel(logging.DEBUG)
# Already did this before
@@ -237,7 +237,7 @@ class UserSession(object):
def before_request():
g.user_session = UserSession()
g.cookie_session = AnonUser()
-
+
class UsersManager(object):
def __init__(self):
self.users = model.User.query.all()
@@ -541,9 +541,9 @@ class LoginUser(object):
import_col = "true"
else:
import_col = "false"
-
- #g.cookie_session.import_traits_to_user()
-
+
+ #g.cookie_session.import_traits_to_user()
+
return self.actual_login(user, import_collections=import_col)
else:
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 39f4a686..3882e60a 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -53,7 +53,7 @@ from wqflask.ctl import ctl_analysis
#from wqflask.trait_submission import submit_trait
from utility import temp_data
-from utility.tools import SQL_URI,TEMPDIR,USE_REDIS,USE_GN_SERVER,GN_SERVER_URL,GN_VERSION
+from utility.tools import SQL_URI,TEMPDIR,USE_REDIS,USE_GN_SERVER,GN_SERVER_URL,GN_VERSION,TWITTER_POST_FETCHER_JS_PATH
from utility.helper_functions import get_species_groups
from base import webqtlFormData
@@ -148,8 +148,7 @@ def tmp_page(img_path):
@app.route("/twitter/")
def bd_files(filename):
- bd_path = app.config['TWITTER_POST_FETCHER_JS_PATH']
- return send_from_directory(bd_path, filename)
+ return send_from_directory(TWITTER_POST_FETCHER_JS_PATH, filename)
#@app.route("/data_sharing")
#def data_sharing_page():
--
cgit v1.2.3
From 755b9aaa31c73cc5fe8c1a75d74846f1d8594419 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 31 May 2017 07:12:28 +0000
Subject: JS module handling
---
VERSION | 2 +-
bin/genenetwork2 | 2 +-
doc/development.org | 20 ++++++++++++++++++++
etc/default_settings.py | 2 +-
wqflask/utility/tools.py | 37 +++++++++++++++++++++++++++++--------
wqflask/wqflask/views.py | 6 +++---
6 files changed, 55 insertions(+), 14 deletions(-)
(limited to 'wqflask')
diff --git a/VERSION b/VERSION
index 144b089a..3e0b7cab 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-2.10-pre1
+2.10-pre4
diff --git a/bin/genenetwork2 b/bin/genenetwork2
index df688989..b3190f1e 100755
--- a/bin/genenetwork2
+++ b/bin/genenetwork2
@@ -68,7 +68,7 @@ else
export PATH=$GN2_PROFILE/bin:$PATH
export PYTHONPATH=$GN2_PROFILE/lib/python2.7/site-packages
export R_LIBS_SITE=$GN2_PROFILE/site-library
- export GUIX_JS_PATH=$GN2_PROFILE/share/genenetwork2/javascript
+ export JS_GUIX_PATH=$GN2_PROFILE/share/genenetwork2/javascript
export GUIX_GTK3_PATH="$GN2_PROFILE/lib/gtk-3.0"
export GI_TYPELIB_PATH="$GN2_PROFILE/lib/girepository-1.0"
export XDG_DATA_DIRS="$GN2_PROFILE/share"
diff --git a/doc/development.org b/doc/development.org
index bbb6084f..5e6e318b 100644
--- a/doc/development.org
+++ b/doc/development.org
@@ -1,5 +1,7 @@
* Development
+** Using GN2_PROFILE
+
After cloning the git source tree you can run the contained GN2 using
an existing GN2_PROFILE, i.e., use a profile that was create to run a
binary installation of GN2. This profile may be found by typing
@@ -21,3 +23,21 @@ and use that instead.
Note that the genenetwork2 script sets up the environment for running
the webserver. This includes path to R modules and python modules. These
are output on startup. To make sure there is no environment pollution you can
+
+** Javascript modules
+
+As of release 2.10-pre4 we Javascript modules are installed in three places:
+
+1. JS_GUIX_PATH: the Guix store - these are Guix pre-packaged modules
+2. The git source tree (./wqflask/wqflask/static/packages/)
+3. JS_GN_PATH: a local directory containing (temporary) development modules
+
+Packages currently in git (2) will move to JS_GUIX_PATH (1) over
+time. This is to keep better track of origin updates. Putting packages
+in git (2) is actively discouraged(!), unless there are GN2 specific
+adaptations to the original Javascript modules.
+
+JS_GN_PATH (3) is for development purposes. By default is is set to
+$HOME/genenetwork/javascript. Say you are working on an updated
+version of a JS module not yet in (1) you can simply check out that
+module in that path and it should show up.
diff --git a/etc/default_settings.py b/etc/default_settings.py
index 4f3a6f5c..1c5b10b4 100644
--- a/etc/default_settings.py
+++ b/etc/default_settings.py
@@ -61,7 +61,7 @@ HOME = os.environ['HOME']
# PRIVATE_FILES = HOME+"/gn2_private_data" # private static data files (unused)
# ---- Local path to JS libraries - for development modules (only)
-# GN2_JS_PATH = os.environ['HOME']+"/genenetwork/javascript" (unused)
+JS_GN_PATH = os.environ['HOME']+"/genenetwork/javascript"
# ---- GN2 Executables (overwrite for testing only)
# PYLMM_COMMAND = str.strip(os.popen("which pylmm_redis").read())
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py
index d46a84ba..c1c6fd36 100644
--- a/wqflask/utility/tools.py
+++ b/wqflask/utility/tools.py
@@ -13,6 +13,11 @@ logger = logging.getLogger(__name__ )
OVERRIDES = {}
+def app_set(command_id, value):
+ """Set application wide value"""
+ app.config.setdefault(command_id,value)
+ value
+
def get_setting(command_id,guess=None):
"""Resolve a setting from the environment or the global settings in
app.config, with valid_path is a function checking whether the
@@ -40,6 +45,7 @@ def get_setting(command_id,guess=None):
def value(command):
if command:
# sys.stderr.write("Found "+command+"\n")
+ app_set(command_id,command)
return command
else:
return None
@@ -89,6 +95,18 @@ def valid_path(dir):
return dir
return None
+def js_path(module=None):
+ """
+ Find the JS module in the two paths
+ """
+ try_gn = get_setting("JS_GN_PATH")+"/"+module
+ if valid_path(try_gn):
+ return try_gn
+ try_guix = get_setting("JS_GUIX_PATH")+"/"+module
+ if valid_path(try_guix):
+ return try_guix
+ raise "No JS path found for "+module+" (check JS_GN_PATH)"
+
def pylmm_command(guess=None):
return valid_bin(get_setting("PYLMM_COMMAND",guess))
@@ -212,16 +230,19 @@ USE_REDIS = get_setting_bool('USE_REDIS')
USE_GN_SERVER = get_setting_bool('USE_GN_SERVER')
GENENETWORK_FILES = get_setting('GENENETWORK_FILES')
-GUIX_JS_PATH = get_setting('GUIX_JS_PATH')
-assert_dir(GUIX_JS_PATH)
-
-PYLMM_COMMAND = pylmm_command()
-GEMMA_COMMAND = gemma_command()
-PLINK_COMMAND = plink_command()
+JS_GUIX_PATH = get_setting('JS_GUIX_PATH')
+assert_dir(JS_GUIX_PATH)
+JS_GN_PATH = get_setting('JS_GN_PATH')
+assert_dir(JS_GN_PATH)
+
+PYLMM_COMMAND = app_set("PYLMM_COMMAND",pylmm_command())
+GEMMA_COMMAND = app_set("GEMMA_COMMAND",gemma_command())
+PLINK_COMMAND = app_set("PLINK_COMMAND",plink_command())
TEMPDIR = tempdir() # defaults to UNIX TMPDIR
-TWITTER_POST_FETCHER_JS_PATH = GUIX_JS_PATH + "/Twitter-Post-Fetcher"
-assert_dir(TWITTER_POST_FETCHER_JS_PATH)
+# ---- Handle specific JS modules
+JS_TWITTER_POST_FETCHER_PATH = get_setting("JS_TWITTER_POST_FETCHER_PATH",js_path("Twitter-Post-Fetcher"))
+assert_dir(JS_TWITTER_POST_FETCHER_PATH)
from six import string_types
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 3882e60a..07151425 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -53,7 +53,7 @@ from wqflask.ctl import ctl_analysis
#from wqflask.trait_submission import submit_trait
from utility import temp_data
-from utility.tools import SQL_URI,TEMPDIR,USE_REDIS,USE_GN_SERVER,GN_SERVER_URL,GN_VERSION,TWITTER_POST_FETCHER_JS_PATH
+from utility.tools import SQL_URI,TEMPDIR,USE_REDIS,USE_GN_SERVER,GN_SERVER_URL,GN_VERSION,JS_TWITTER_POST_FETCHER_PATH
from utility.helper_functions import get_species_groups
from base import webqtlFormData
@@ -147,8 +147,8 @@ def tmp_page(img_path):
img_base64 = bytesarray )
@app.route("/twitter/")
-def bd_files(filename):
- return send_from_directory(TWITTER_POST_FETCHER_JS_PATH, filename)
+def twitter(filename):
+ return send_from_directory(JS_TWITTER_POST_FETCHER_PATH, filename)
#@app.route("/data_sharing")
#def data_sharing_page():
--
cgit v1.2.3
From 41da1283c829e587a37e21c52f71f9b1c57be80b Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 31 May 2017 07:42:13 +0000
Subject: JS_GUIX_PATH may not be there
---
wqflask/utility/tools.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
(limited to 'wqflask')
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py
index c1c6fd36..49e3471e 100644
--- a/wqflask/utility/tools.py
+++ b/wqflask/utility/tools.py
@@ -231,7 +231,7 @@ USE_GN_SERVER = get_setting_bool('USE_GN_SERVER')
GENENETWORK_FILES = get_setting('GENENETWORK_FILES')
JS_GUIX_PATH = get_setting('JS_GUIX_PATH')
-assert_dir(JS_GUIX_PATH)
+# assert_dir(JS_GUIX_PATH) - don't enforce right now
JS_GN_PATH = get_setting('JS_GN_PATH')
assert_dir(JS_GN_PATH)
--
cgit v1.2.3
From 4df8db0d30ea19f5cfc7ec7d4222a3590b217e5c Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 2 Jun 2017 10:14:30 +0000
Subject: settings: do not enforce JS paths
---
wqflask/utility/tools.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
(limited to 'wqflask')
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py
index 49e3471e..393ff2df 100644
--- a/wqflask/utility/tools.py
+++ b/wqflask/utility/tools.py
@@ -233,7 +233,7 @@ GENENETWORK_FILES = get_setting('GENENETWORK_FILES')
JS_GUIX_PATH = get_setting('JS_GUIX_PATH')
# assert_dir(JS_GUIX_PATH) - don't enforce right now
JS_GN_PATH = get_setting('JS_GN_PATH')
-assert_dir(JS_GN_PATH)
+# assert_dir(JS_GN_PATH)
PYLMM_COMMAND = app_set("PYLMM_COMMAND",pylmm_command())
GEMMA_COMMAND = app_set("GEMMA_COMMAND",gemma_command())
--
cgit v1.2.3
From afd2028e0ddab64e433eceb19e8cbd8d7149e080 Mon Sep 17 00:00:00 2001
From: Lei Yan
Date: Mon, 26 Jun 2017 19:38:49 +0000
Subject: Fix Correlation Scatterplot things
---
.../wqflask/static/new/css/corr_scatter_plot2.css | 20 ++--
.../new/javascript/draw_corr_scatterplot-2.js | 132 +++++++++++----------
wqflask/wqflask/templates/corr_scatterplot.html | 12 +-
3 files changed, 86 insertions(+), 78 deletions(-)
(limited to 'wqflask')
diff --git a/wqflask/wqflask/static/new/css/corr_scatter_plot2.css b/wqflask/wqflask/static/new/css/corr_scatter_plot2.css
index 92e777c2..e21d828f 100644
--- a/wqflask/wqflask/static/new/css/corr_scatter_plot2.css
+++ b/wqflask/wqflask/static/new/css/corr_scatter_plot2.css
@@ -1,19 +1,25 @@
.nvd3 .nv-axis.nv-x text {
- font-size: 16px;
- font-weight: normal;
- fill: black;
+ font-size: 17px;
+ font-weight: normal;
+ fill: black;
}
.nvd3 .nv-axis.nv-y text {
- font-size: 16px;
- font-weight: normal;
- fill: black;
+ font-size: 17px;
+ font-weight: normal;
+ fill:black;
}
-.nv-y .tick.zero line {
+.nv-x .nv-axis g path.domain {
stroke: black;
+ stroke-width: 2;
}
.nv-y .nv-axis g path.domain {
stroke: black;
+ stroke-width: 2;
+}
+
+.nvd3 .nv-axis.nv-x path.domain {
+ stroke-opacity: 1;
}
diff --git a/wqflask/wqflask/static/new/javascript/draw_corr_scatterplot-2.js b/wqflask/wqflask/static/new/javascript/draw_corr_scatterplot-2.js
index 7a5a86bd..f88e7d5d 100644
--- a/wqflask/wqflask/static/new/javascript/draw_corr_scatterplot-2.js
+++ b/wqflask/wqflask/static/new/javascript/draw_corr_scatterplot-2.js
@@ -1,74 +1,76 @@
var chart;
nv.addGraph(function() {
- //
- chart = nv.models.scatterChart();
- //
- chart.showLegend(false);
- chart.duration(300);
- chart.color(d3.scale.category10().range());
- chart.pointRange([200,0]);
- //
- // chart.showDistX(true);
- // chart.showDistY(true);
- chart.xAxis.tickFormat(d3.format('.02f'));
- chart.yAxis.tickFormat(d3.format('.02f'));
- // chart.showXAxis(false);
- // chart.showYAxis(false);
- chart.xAxis.axisLabel(js_data.trait_1);
- chart.yAxis.axisLabel(js_data.trait_2);
- //
- xmin = d3.min(js_data.data[0]);
- xmax = d3.max(js_data.data[0]);
- xrange = xmax - xmin;
- ymin = d3.min(js_data.data[1]);
- ymax = d3.max(js_data.data[1]);
- yrange = ymax - ymin;
- chart.xDomain([xmin - xrange/10, xmax + xrange/10]);
- chart.yDomain([ymin - yrange/10, ymax + yrange/10]);
- //
- d3.select('#scatterplot2 svg').datum(nv.log(getdata())).call(chart);
- nv.utils.windowResize(chart.update);
- return chart;
+ //
+ chart = nv.models.scatterChart();
+ //
+ chart.showLegend(false);
+ chart.duration(300);
+ chart.color(d3.scale.category10().range());
+ chart.pointRange([200,0]);
+ //
+ chart.xAxis.tickFormat(d3.format('.02f'));
+ chart.yAxis.tickFormat(d3.format('.02f'));
+ chart.xAxis.axisLabel(js_data.trait_1);
+ chart.xAxis.axisLabelDistance(11);
+ chart.yAxis.axisLabel(js_data.trait_2);
+ chart.yAxis.axisLabelDistance(11);
+ //
+ xmin = d3.min(js_data.data[0]);
+ xmax = d3.max(js_data.data[0]);
+ xrange = xmax - xmin;
+ ymin = d3.min(js_data.data[1]);
+ ymax = d3.max(js_data.data[1]);
+ yrange = ymax - ymin;
+ chart.xDomain([xmin - xrange/10, xmax + xrange/10]);
+ chart.yDomain([ymin - yrange/10, ymax + yrange/10]);
+ //
+ chart.tooltip.contentGenerator(function (obj) {
+ return '(' + obj.point.x + ', ' + obj.point.y + ')';
+ });
+ //
+ d3.select('#scatterplot2 svg').datum(nv.log(getdata())).call(chart);
+ nv.utils.windowResize(chart.update);
+ return chart;
});
function getdata () {
- var data = [];
- data.push({
- values: [],
- slope: js_data.slope,
- intercept: js_data.intercept
- });
- for (j = 0; j < js_data.data[0].length; j++) {
- data[0].values.push({
- x: js_data.data[0][j],
- y: js_data.data[1][j],
- size: 10,
- shape: 'circle'
- });
- }
- return data;
+ var data = [];
+ data.push({
+ values: [],
+ slope: js_data.slope,
+ intercept: js_data.intercept
+ });
+ for (j = 0; j < js_data.data[0].length; j++) {
+ data[0].values.push({
+ x: js_data.data[0][j],
+ y: js_data.data[1][j],
+ size: 10,
+ shape: 'circle'
+ });
+ }
+ return data;
}
-
+
function randomData(groups, points) {
- var data = [],
- shapes = ['circle'],
- random = d3.random.normal();
- for (i = 0; i < groups; i++) {
- data.push({
- key: 'Group ' + i,
- values: [],
- slope: Math.random() - .01,
- intercept: Math.random() - .5
- });
- for (j = 0; j < points; j++) {
- data[i].values.push({
- x: random(),
- y: random(),
- size: Math.random(),
- shape: shapes[j % shapes.length]
- });
- }
- }
- return data;
+ var data = [],
+ shapes = ['circle'],
+ random = d3.random.normal();
+ for (i = 0; i < groups; i++) {
+ data.push({
+ key: 'Group ' + i,
+ values: [],
+ slope: Math.random() - .01,
+ intercept: Math.random() - .5
+ });
+ for (j = 0; j < points; j++) {
+ data[i].values.push({
+ x: random(),
+ y: random(),
+ size: Math.random(),
+ shape: shapes[j % shapes.length]
+ });
+ }
+ }
+ return data;
}
diff --git a/wqflask/wqflask/templates/corr_scatterplot.html b/wqflask/wqflask/templates/corr_scatterplot.html
index 4464025e..f07568a0 100644
--- a/wqflask/wqflask/templates/corr_scatterplot.html
+++ b/wqflask/wqflask/templates/corr_scatterplot.html
@@ -55,11 +55,11 @@
- num overlap {{jsdata.num_overlap}} slope {{jsdata.slope}} intercept {{jsdata.intercept}} r value {{jsdata.r_value}} p value {{jsdata.p_value}} number {{jsdata.num_overlap}} slope {{'%0.3f' % jsdata.slope}} intercept {{'%0.3f' % jsdata.intercept}} r value {{'%0.3f' % jsdata.r_value}} p value {{'%0.3e' % jsdata.p_value}}
@@ -85,7 +85,7 @@
-->
-
+
--
cgit v1.2.3
From 3a7caecf4c7d30f693ba838e1983d03a742fe5ba Mon Sep 17 00:00:00 2001
From: Lei Yan
Date: Wed, 28 Jun 2017 17:02:38 +0000
Subject: Update Correlation Scatterplot
---
.../wqflask/static/new/css/corr_scatter_plot2.css | 27 +++++++++++++++++-----
.../new/javascript/draw_corr_scatterplot-2.js | 4 ++--
2 files changed, 23 insertions(+), 8 deletions(-)
(limited to 'wqflask')
diff --git a/wqflask/wqflask/static/new/css/corr_scatter_plot2.css b/wqflask/wqflask/static/new/css/corr_scatter_plot2.css
index e21d828f..5aa9b9bf 100644
--- a/wqflask/wqflask/static/new/css/corr_scatter_plot2.css
+++ b/wqflask/wqflask/static/new/css/corr_scatter_plot2.css
@@ -1,25 +1,40 @@
.nvd3 .nv-axis.nv-x text {
- font-size: 17px;
+ font-size: 16px;
font-weight: normal;
fill: black;
}
.nvd3 .nv-axis.nv-y text {
- font-size: 17px;
+ font-size: 16px;
font-weight: normal;
fill:black;
}
.nv-x .nv-axis g path.domain {
- stroke: black;
- stroke-width: 2;
+ stroke: black;
+ stroke-width: 2;
}
.nv-y .nv-axis g path.domain {
- stroke: black;
- stroke-width: 2;
+ stroke: black;
+ stroke-width: 2;
}
.nvd3 .nv-axis.nv-x path.domain {
stroke-opacity: 1;
}
+
+.nvd3 .nv-axis.nv-y path.domain {
+ stroke-opacity: 1;
+}
+
+line.nv-regLine {
+ stroke: red !important;
+}
+
+.nv-axisMin-x,
+.nv-axisMax-x,
+.nv-axisMin-y,
+.nv-axisMax-y {
+ display: none;
+}
diff --git a/wqflask/wqflask/static/new/javascript/draw_corr_scatterplot-2.js b/wqflask/wqflask/static/new/javascript/draw_corr_scatterplot-2.js
index f88e7d5d..ad6c7d6b 100644
--- a/wqflask/wqflask/static/new/javascript/draw_corr_scatterplot-2.js
+++ b/wqflask/wqflask/static/new/javascript/draw_corr_scatterplot-2.js
@@ -9,8 +9,8 @@ nv.addGraph(function() {
chart.color(d3.scale.category10().range());
chart.pointRange([200,0]);
//
- chart.xAxis.tickFormat(d3.format('.02f'));
- chart.yAxis.tickFormat(d3.format('.02f'));
+ chart.xAxis.tickFormat(d3.format('r'));
+ chart.yAxis.tickFormat(d3.format('r'));
chart.xAxis.axisLabel(js_data.trait_1);
chart.xAxis.axisLabelDistance(11);
chart.yAxis.axisLabel(js_data.trait_2);
--
cgit v1.2.3
From bb67456364bda733bbe1eab80ab0ba9d44fa7daa Mon Sep 17 00:00:00 2001
From: Lei Yan
Date: Thu, 29 Jun 2017 20:40:43 +0000
Subject: Update Correlation Scatterplot
---
wqflask/wqflask/templates/corr_scatterplot.html | 24 +++++++++++++-----------
1 file changed, 13 insertions(+), 11 deletions(-)
(limited to 'wqflask')
diff --git a/wqflask/wqflask/templates/corr_scatterplot.html b/wqflask/wqflask/templates/corr_scatterplot.html
index f07568a0..05891c95 100644
--- a/wqflask/wqflask/templates/corr_scatterplot.html
+++ b/wqflask/wqflask/templates/corr_scatterplot.html
@@ -53,16 +53,6 @@
Correlation Scatterplot
-
-
- number {{jsdata.num_overlap}} slope {{'%0.3f' % jsdata.slope}} intercept {{'%0.3f' % jsdata.intercept}} r value {{'%0.3f' % jsdata.r_value}} p value {{'%0.3e' % jsdata.p_value}}
-