From 4852779011acb075e97e22f25db4fa7373ec1c73 Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Mon, 16 Mar 2015 18:21:44 +0000
Subject: Moved setting of geno variable into non-human

---
 wqflask/wqflask/my_pylmm/pyLMM/lmm.py | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py
index 58d7593d..16073d2c 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py
@@ -731,8 +731,7 @@ def gn2_redis(key,species,is_testing=False):
 
     print('kinship', np.array(params['kinship_matrix']))
     print('pheno', np.array(params['pheno_vector']))
-    geno = np.array(params['genotype_matrix'])
-    print('geno', geno.shape, geno)
+
     # sys.exit(1)
     
     if species == "human" :
@@ -743,6 +742,9 @@ def gn2_redis(key,species,is_testing=False):
                   refit = params['refit'],
                   tempdata = tempdata)
     else:
+        geno = np.array(params['genotype_matrix'])
+        print('geno', geno.shape, geno)
+
         ps, ts = run_other(pheno_vector = np.array(params['pheno_vector']),
                   genotype_matrix = geno,
                   restricted_max_likelihood = params['restricted_max_likelihood'],
-- 
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