From 3977687e3613e71705e7ffcc894c51f166f46820 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Tue, 13 Jun 2017 17:15:56 +0000
Subject: Fixed issue that caused haplotype analyst to no longer work

Fixed Results table for centimorgan results to display cM instead of Mb
---
 .../wqflask/marker_regression/marker_regression_gn1.py  |  4 ++--
 wqflask/wqflask/templates/marker_regression_gn1.html    | 17 +++++++++++------
 wqflask/wqflask/views.py                                |  1 +
 3 files changed, 14 insertions(+), 8 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/marker_regression/marker_regression_gn1.py b/wqflask/wqflask/marker_regression/marker_regression_gn1.py
index 74474cb0..08332e7d 100644
--- a/wqflask/wqflask/marker_regression/marker_regression_gn1.py
+++ b/wqflask/wqflask/marker_regression/marker_regression_gn1.py
@@ -447,7 +447,7 @@ class MarkerRegression(object):
         if self.haplotypeAnalystChecked and self.selectedChr > -1:
            #thisTrait = self.traitList[0]
            thisTrait = self.this_trait
-           _strains, _vals, _vars = thisTrait.export_informative()
+           _strains, _vals, _vars, _aliases = thisTrait.export_informative()
            smd=[]
            for ii, _val in enumerate(_vals):
                temp = GeneralObject(name=_strains[ii], value=_val)
@@ -1440,7 +1440,7 @@ class MarkerRegression(object):
 
         #thisTrait = self.traitList[0]
         thisTrait = self.this_trait
-        _strains, _vals, _vars = thisTrait.export_informative()
+        _strains, _vals, _vars, _aliases = thisTrait.export_informative()
 
         smd=[]
         for ii, _val in enumerate(_vals):
diff --git a/wqflask/wqflask/templates/marker_regression_gn1.html b/wqflask/wqflask/templates/marker_regression_gn1.html
index ae922389..5afd134a 100644
--- a/wqflask/wqflask/templates/marker_regression_gn1.html
+++ b/wqflask/wqflask/templates/marker_regression_gn1.html
@@ -174,7 +174,7 @@
 
         </form>
         {% if selectedChr == -1 %}
-        <div style="width:{% if 'additive' in trimmed_markers[0] %}40%{% else %}30%{% endif %};">
+        <div style="width:{% if 'additive' in trimmed_markers[0] %}45%{% else %}35%{% endif %};">
           <h2>Results</h2>
           <div id="table_container">
           <table id="qtl_results" class="table table-hover table-striped nowrap">
@@ -185,7 +185,7 @@
                 <th>Locus</th>
                 <th>{{ LRS_LOD }}</th>
                 <th>Chr</th>
-                {% if plotScale == "centimorgan" %}
+                {% if plotScale != "physic" %}
                 <th>cM</th>
                 {% else %}
                 <th>Mb</th>
@@ -222,7 +222,11 @@
                 {% endif %}
                 {% endif %}
                 <td align="right">{{marker.chr}}</td>
+                {% if plotScale != "physic" %}
+                <td align="right">{{ '%0.3f' | format(marker.Mb|float) }}</td>
+                {% else %}
                 <td align="right">{{ '%0.6f' | format(marker.Mb|float) }}</td>
+                {% endif %}
                 {% if 'additive' in marker %}
                 <td align="right">{{ '%0.3f' | format(marker.additive|float) }}</td>
                 {% endif %}
@@ -235,8 +239,8 @@
           </table>
           </div>
         </div>
-        {% elif selectedChr != -1 and (dataset.group.species == 'mouse' or dataset.group.species == 'rat') %}
-        <div>
+        {% elif selectedChr != -1 and plotScale =="physic" and (dataset.group.species == 'mouse' or dataset.group.species == 'rat') %}
+        <div style="width: 100%;">
           <h2>Interval Analyst</h2>
           <div id="table_container">
           <table id="interval_analyst" class="table table-hover table-striped nowrap">
@@ -350,9 +354,10 @@
                 "order": [[3, "asc" ]],
                 "sDom": "RZtir",
                 "iDisplayLength": -1,
-                "bDeferRender": true,
+                "autoWidth": false,
+                "deferRender": true,
                 "bSortClasses": false,
-                "scrollY": true,
+                "scrollY": "600px",
                 "scrollCollapse": false,
                 "paging": false
             } );
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index ca7f04e9..83496000 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -558,6 +558,7 @@ def marker_regression_page():
         'selected_chr',
         'chromosomes',
         'mapping_scale',
+        'plotScale',
         'score_type',
         'suggestive',
         'significant',
-- 
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