From 321d8e544f1765845b7cb31bceff7c4d3929d394 Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Thu, 10 Jan 2013 17:13:44 -0600
Subject: Checking in before trying to put manhattan plot sections closer
 together

---
 .../wqflask/static/new/css/marker_regression.css   |  2 +-
 .../static/new/javascript/marker_regression.coffee | 47 +++++++++++++------
 .../static/new/javascript/marker_regression.js     | 54 ++++++++++++++--------
 3 files changed, 71 insertions(+), 32 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/static/new/css/marker_regression.css b/wqflask/wqflask/static/new/css/marker_regression.css
index 7bfb10fb..58da563c 100644
--- a/wqflask/wqflask/static/new/css/marker_regression.css
+++ b/wqflask/wqflask/static/new/css/marker_regression.css
@@ -16,4 +16,4 @@
     height: 400px;
     width: 900px;
     clear: both;
-}
+}
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/marker_regression.coffee b/wqflask/wqflask/static/new/javascript/marker_regression.coffee
index 6a5e4d77..655c8d1a 100644
--- a/wqflask/wqflask/static/new/javascript/marker_regression.coffee
+++ b/wqflask/wqflask/static/new/javascript/marker_regression.coffee
@@ -88,13 +88,16 @@ $ ->
         
             #console.log("max_lrs is", max_lrs)
         
+        
             x_axis_max = Math.ceil(@max_mb/25) * 25
             x_axis_ticks = []
             x_tick = 0
             while (x_tick <= x_axis_max)
                 x_axis_ticks.push(x_tick)
                 x_tick += 25
-            $.jqplot(div_name,  [@plot_points],
+                
+            
+            plot_options = 
                 title: @name
                 seriesDefaults:
                     showLine: false
@@ -115,15 +118,29 @@ $ ->
                             showGridline: false
                             formatString: '%d' 
                         label: "Megabases"
-                    yaxis:
-                        min: 0
-                        max: Math.floor(max_lrs + 0.1 * max_lrs)
-                        tickInterval: 1
-                        label: "LRS"
-                        tickOptions:
-                            formatString: '%d' 
-                            showGridline: false
-            )
+                   
+                        
+            
+            if @name == "1"
+                plot_options.axes.yaxis =
+                    min: 0
+                    max: Math.floor(max_lrs + 0.1 * max_lrs)
+                    tickInterval: 1
+                    label: "LRS"
+                    tickOptions:
+                        formatString: '%d' 
+                        showGridline: false    
+            else
+                plot_options.axes.yaxis =
+                    show: false
+                    min: 0
+                    max: Math.floor(max_lrs + 0.1 * max_lrs)
+                    tickInterval: 1
+                    tickOptions:
+                        formatString: '%d' 
+                        showGridline: false                        
+                    
+            $.jqplot(div_name,  [@plot_points], plot_options)
 
     class Manhattan_Plot
         constructor: ->
@@ -133,8 +150,7 @@ $ ->
             @build_chromosomes()
             
             @display_graphs()
-            
-            
+
         build_chromosomes: ->
             for result in js_data.qtl_results
                 #if result.locus.chromosome == '1'
@@ -165,11 +181,16 @@ $ ->
             console.log("keys are:", keys)
             
             for key in keys
-                html = """<div id="manhattan_plot_#{ key }" class="manhattan_plot_segment"></div>"""
+                this_class = "manhattan_plot_segment"
+                if key != "1"
+                    this_class += " no_y_axis"
+                html = """<div id="manhattan_plot_#{ key }" class=#{ this_class }></div>"""
                 console.log("html is:", html)
                 $("#manhattan_plots").append(html)
                 @chromosomes[key].display_graph(@max_lrs)
             
+            $(".jqplot-yaxis").hide()
+            $(".jqplot-yaxis-tick").hide()
             
             
         #process_data: ->
diff --git a/wqflask/wqflask/static/new/javascript/marker_regression.js b/wqflask/wqflask/static/new/javascript/marker_regression.js
index fce31f79..6f4a33e7 100644
--- a/wqflask/wqflask/static/new/javascript/marker_regression.js
+++ b/wqflask/wqflask/static/new/javascript/marker_regression.js
@@ -88,7 +88,7 @@
       };
 
       Chromosome.prototype.display_graph = function(max_lrs) {
-        var div_name, x_axis_max, x_axis_ticks, x_tick;
+        var div_name, plot_options, x_axis_max, x_axis_ticks, x_tick;
         div_name = 'manhattan_plot_' + this.name;
         console.log("div_name:", div_name);
         x_axis_max = Math.ceil(this.max_mb / 25) * 25;
@@ -98,7 +98,7 @@
           x_axis_ticks.push(x_tick);
           x_tick += 25;
         }
-        return $.jqplot(div_name, [this.plot_points], {
+        plot_options = {
           title: this.name,
           seriesDefaults: {
             showLine: false,
@@ -123,19 +123,33 @@
                 formatString: '%d'
               },
               label: "Megabases"
-            },
-            yaxis: {
-              min: 0,
-              max: Math.floor(max_lrs + 0.1 * max_lrs),
-              tickInterval: 1,
-              label: "LRS",
-              tickOptions: {
-                formatString: '%d',
-                showGridline: false
-              }
             }
           }
-        });
+        };
+        if (this.name === "1") {
+          plot_options.axes.yaxis = {
+            min: 0,
+            max: Math.floor(max_lrs + 0.1 * max_lrs),
+            tickInterval: 1,
+            label: "LRS",
+            tickOptions: {
+              formatString: '%d',
+              showGridline: false
+            }
+          };
+        } else {
+          plot_options.axes.yaxis = {
+            show: false,
+            min: 0,
+            max: Math.floor(max_lrs + 0.1 * max_lrs),
+            tickInterval: 1,
+            tickOptions: {
+              formatString: '%d',
+              showGridline: false
+            }
+          };
+        }
+        return $.jqplot(div_name, [this.plot_points], plot_options);
       };
 
       return Chromosome;
@@ -173,7 +187,7 @@
         /* Call display_graph for each chromosome
         */
 
-        var extra_keys, html, key, keys, numbered_keys, _i, _len, _results;
+        var extra_keys, html, key, keys, numbered_keys, this_class, _i, _len;
         numbered_keys = [];
         extra_keys = [];
         for (key in this.chromosomes) {
@@ -187,15 +201,19 @@
         extra_keys.sort();
         keys = numbered_keys.concat(extra_keys);
         console.log("keys are:", keys);
-        _results = [];
         for (_i = 0, _len = keys.length; _i < _len; _i++) {
           key = keys[_i];
-          html = "<div id=\"manhattan_plot_" + key + "\" class=\"manhattan_plot_segment\"></div>";
+          this_class = "manhattan_plot_segment";
+          if (key !== "1") {
+            this_class += " no_y_axis";
+          }
+          html = "<div id=\"manhattan_plot_" + key + "\" class=" + this_class + "></div>";
           console.log("html is:", html);
           $("#manhattan_plots").append(html);
-          _results.push(this.chromosomes[key].display_graph(this.max_lrs));
+          this.chromosomes[key].display_graph(this.max_lrs);
         }
-        return _results;
+        $(".jqplot-yaxis").hide();
+        return $(".jqplot-yaxis-tick").hide();
       };
 
       return Manhattan_Plot;
-- 
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