From 20be011f8b33fcde94037af19e403d3b76d5c9d1 Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Fri, 13 Sep 2013 14:29:18 -0500
Subject: Added file that will convert genofiles to plink ped/map files

---
 wqflask/wqflask/my_pylmm/data/geno_to_ped.py | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)
 create mode 100644 wqflask/wqflask/my_pylmm/data/geno_to_ped.py

(limited to 'wqflask')

diff --git a/wqflask/wqflask/my_pylmm/data/geno_to_ped.py b/wqflask/wqflask/my_pylmm/data/geno_to_ped.py
new file mode 100644
index 00000000..9091ad9a
--- /dev/null
+++ b/wqflask/wqflask/my_pylmm/data/geno_to_ped.py
@@ -0,0 +1,22 @@
+from __future__ import absolute_import, division, print_function
+
+import csv
+
+class ConvertToPed(object):
+
+    def __init__(self, input_file, output_file):
+        self.input_file = input_file
+        self.output_file = output_file
+        
+    def convert(self):
+    
+        self.haplotype_notation = {
+        '@mat': "1",
+        '@pat': "0",
+        '@het': "0.5",
+        '@unk': "NA"
+        }
+        
+        with open(self.output_file, "w") as self.output_fh:
+            self.process_csv()
+        
\ No newline at end of file
-- 
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