From 1ec219b241e7a322b19d10746731861e35ee09f1 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Sun, 12 Jan 2020 17:53:39 -0600
Subject: Fixed GN1 links in GN2

---
 wqflask/wqflask/templates/index_page_orig.html    | 10 +++++-----
 wqflask/wqflask/templates/show_trait_details.html | 12 ++++++------
 2 files changed, 11 insertions(+), 11 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/templates/index_page_orig.html b/wqflask/wqflask/templates/index_page_orig.html
index 6f21af56..7b2a2c0f 100755
--- a/wqflask/wqflask/templates/index_page_orig.html
+++ b/wqflask/wqflask/templates/index_page_orig.html
@@ -168,7 +168,7 @@
                         <li><b>RIF=mitochondrial</b> searches RNA databases for <a href="https://en.wikipedia.org/wiki/GeneRIF">
                         GeneRIF</a> links.</li>
 
-                        <li><b>WIKI=nicotine</b> searches <a href="http://www.genenetwork.org/webqtl/main.py?FormID=geneWiki">
+                        <li><b>WIKI=nicotine</b> searches <a href="http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki">
                         GeneWiki</a> for genes that you or other users have annotated
                         with the word <i>nicotine</i>.</li>
 
@@ -177,7 +177,7 @@
                             Gene Ontology</a>.</li>
 
                         <li><b>RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)</b>
-                        finds diabetes-associated transcripts with peak <a href="http://www.genenetwork.org/glossary.html#E">
+                        finds diabetes-associated transcripts with peak <a href="http://gn1.genenetwork.org/glossary.html#E">
                         trans eQTLs</a> on Chr 2 between 100 and 105 Mb with LRS
                         scores between 9 and 999.</li>
                       </ul>
@@ -189,7 +189,7 @@
 	            <div class="page-header">
                         <h1>Affiliates</h1>
                         <ul>
-                          <li><b><a href="http://genenetwork.org">GeneNetwork 1</a> at UTHSC</b></li>
+                          <li><b><a href="http://gn1.genenetwork.org">GeneNetwork 1</a> at UTHSC</b></li>
                           <li><a href="http://ucscbrowser.genenetwork.org/">Genome Browser</a> at UTHSC</li>
                           <li><a href="https://systems-genetics.org/">Systems Genetics</a> at EPFL</li>
                           <li><a href="http://bnw.genenetwork.org/">Bayesian Network Web Server</a> at UTHSC</li>
@@ -259,7 +259,7 @@
                       </ul>
                     <h3>GeneNetwork v1:</h3>
                     <ul>
-                        <li><a href="http://www.genenetwork.org/">Main website</a> at UTHSC</li>
+                        <li><a href="http://gn1.genenetwork.org/">Main website</a> at UTHSC</li>
                         <li><a href="http://artemis.uthsc.edu/">Time Machine</a>: Full GN versions from 2009 to 2016 (mm9)</li>
                             Cloud (EC2)</a></li>
                     </ul>
@@ -299,7 +299,7 @@
 
                 <h3>User Guide</h3>
                 <h5>Read the
-                <a href="http://www.genenetwork.org/index4.html">
+                <a href="http://gn1.genenetwork.org/index4.html">
                     user guide</a>.</h5>
 
                 </section>-->
diff --git a/wqflask/wqflask/templates/show_trait_details.html b/wqflask/wqflask/templates/show_trait_details.html
index b64b34d7..3584be22 100644
--- a/wqflask/wqflask/templates/show_trait_details.html
+++ b/wqflask/wqflask/templates/show_trait_details.html
@@ -53,7 +53,7 @@
     <tr>
         <td><b>Database</b></td>
         <td>
-            <a href="http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName={{ dataset.name }}" target="_blank">
+            <a href="http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName={{ dataset.name }}" target="_blank">
                 {{ dataset.fullname }}
             </a>
         </td>
@@ -62,7 +62,7 @@
     <tr>
         <td><b>Target Score</b></td>
         <td>
-            <a href="http://genenetwork.org/blatInfo.html" target="_blank" title="Values higher than 2 for the specificity are good">
+            <a href="http://gn1.genenetwork.org/blatInfo.html" target="_blank" title="Values higher than 2 for the specificity are good">
                 BLAT Specificity
             </a>: 
             {{ "%0.3f" | format(this_trait.probe_set_specificity|float) }}
@@ -208,7 +208,7 @@
         </a>
         {% if this_trait.dataset.type == 'ProbeSet' %}
         {% if this_trait.symbol != None %}
-        <a target="_blank" href="http://www.genenetwork.org/webqtl/main.py?cmd=sch&amp;gene={{ this_trait.symbol }}&amp;alias=1&amp;species={{ dataset.group.species }}">
+        <a target="_blank" href="http://gn1.genenetwork.org/webqtl/main.py?cmd=sch&amp;gene={{ this_trait.symbol }}&amp;alias=1&amp;species={{ dataset.group.species }}">
         <button type="button" class="btn btn-default" title="Find similar expression data">Find</button>
         </a>
         {% endif %}
@@ -218,7 +218,7 @@
         </a>
         {% endif %}
         {% if this_trait.symbol != None %}
-        <a target="_blank" href="http://genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol={{ this_trait.symbol }}">
+        <a target="_blank" href="http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol={{ this_trait.symbol }}">
         <button type="button" class="btn btn-default" title="Write or review comments about this gene">GeneWiki</button>
         </a>
         {% if dataset.group.species == "mouse" or dataset.group.species == "rat" %}
@@ -228,12 +228,12 @@
         {% endif %}
         {% endif %}
         {% if show_probes == "True" %}
-        <a target="_blank" href="http://genenetwork.org/webqtl/main.py?FormID=showProbeInfo&database={{ this_trait.dataset.name }}&ProbeSetID={{ this_trait.name }}&CellID={{ this_trait.cellid }}&RISet={{ dataset.group.name }}&incparentsf1=ON">
+        <a target="_blank" href="http://gn1.genenetwork.org/webqtl/main.py?FormID=showProbeInfo&database={{ this_trait.dataset.name }}&ProbeSetID={{ this_trait.name }}&CellID={{ this_trait.cellid }}&RISet={{ dataset.group.name }}&incparentsf1=ON">
         <button type="button" class="btn btn-default" title="Check sequence of probes">Probes</button>
         </a>
         {% endif %}
         {% endif %}
-        <a target="_blank" href="http://www.genenetwork.org/webqtl/main.py?cmd=show&db={{ this_trait.dataset.name }}&probeset={{ this_trait.name }}">
+        <a target="_blank" href="http://gn1.genenetwork.org/webqtl/main.py?cmd=show&db={{ this_trait.dataset.name }}&probeset={{ this_trait.name }}">
         <button type="button" id="view_in_gn1" class="btn btn-primary" title="View Trait in GN1">View in GN1</button>
         </a>
     </div>
-- 
cgit v1.2.3