From 061c88d0973a324652d217706639f3dbc7f3da32 Mon Sep 17 00:00:00 2001 From: Munyoki Kilyungi Date: Tue, 5 Sep 2023 18:06:01 +0300 Subject: Replace scipy.isnan with numpy.isnan * wqflask/wqflask/api/correlation.py (get_sample_r_and_p_values): Replace scipy.isnan with numpy.isnan. scipy.isnan is deprecated and will be removed in SciPy 2.0.0 Signed-off-by: Munyoki Kilyungi --- wqflask/wqflask/api/correlation.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) (limited to 'wqflask') diff --git a/wqflask/wqflask/api/correlation.py b/wqflask/wqflask/api/correlation.py index f3a06e19..f3910340 100644 --- a/wqflask/wqflask/api/correlation.py +++ b/wqflask/wqflask/api/correlation.py @@ -1,5 +1,6 @@ import collections import scipy +import numpy from base import data_set from base.trait import create_trait, retrieve_sample_data @@ -183,7 +184,7 @@ def get_sample_r_and_p_values(this_trait, this_dataset, target_vals, target_data this_trait_vals, shared_target_vals) if num_overlap > 5: - if scipy.isnan(sample_r): + if numpy.isnan(sample_r): return None else: return [sample_r, sample_p, num_overlap] -- cgit v1.2.3