From 8aeff9b91d078a40a50d13f6393a1f1dabf62aa4 Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Fri, 18 Jan 2013 16:58:28 -0600
Subject: Renamed CorrelationPage.py to show_corr_results.py

Worked with correlation code; got to the code that
begins to do the actual correlations

Created a function "get_dataset_and_trait" in
the new file "helper_functions.py" because the
code initializing the dataset and trait objects
was repeated in multiple places
---
 wqflask/utility/helper_functions.py | 15 +++++++++++++++
 1 file changed, 15 insertions(+)
 create mode 100644 wqflask/utility/helper_functions.py

(limited to 'wqflask/utility/helper_functions.py')

diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py
new file mode 100644
index 00000000..920d9ac6
--- /dev/null
+++ b/wqflask/utility/helper_functions.py
@@ -0,0 +1,15 @@
+from __future__ import absolute_import, print_function, division
+
+from base.trait import GeneralTrait
+from base import data_set
+
+def get_dataset_and_trait(self, start_vars):
+    #assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype"
+    self.dataset = data_set.create_dataset(start_vars['dataset'])
+    self.this_trait = GeneralTrait(dataset=self.dataset.name,
+                                   name=start_vars['trait_id'],
+                                   cellid=None)
+    
+    #if read_genotype:
+    self.dataset.group.read_genotype_file()
+    self.genotype = self.dataset.group.genotype    
\ No newline at end of file
-- 
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