From f90e77fab78c4504ac9dabb188459ab5d03ac287 Mon Sep 17 00:00:00 2001
From: Alexanderlacuna
Date: Wed, 4 Nov 2020 10:15:05 +0300
Subject: remove extra whitespace
---
wqflask/tests/wqflask/show_trait/test_show_trait.py | 21 ---------------------
1 file changed, 21 deletions(-)
(limited to 'wqflask/tests')
diff --git a/wqflask/tests/wqflask/show_trait/test_show_trait.py b/wqflask/tests/wqflask/show_trait/test_show_trait.py
index 70061e2d..ce850c8b 100644
--- a/wqflask/tests/wqflask/show_trait/test_show_trait.py
+++ b/wqflask/tests/wqflask/show_trait/test_show_trait.py
@@ -67,11 +67,8 @@ class TestTraits(unittest.TestCase):
}
}
"""
-
get_return_obj = TraitObject({"content": content_json_string})
-
mock_get.return_value = get_return_obj
-
results = get_ncbi_summary(trait)
mock_exists.assert_called_once()
mock_get.assert_called_once_with(f"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=gene&id={trait.geneid}&retmode=json")
@@ -93,7 +90,6 @@ class TestTraits(unittest.TestCase):
}
}
"""
-
results = get_ncbi_summary(trait)
self.assertEqual(results, None)
@@ -101,13 +97,11 @@ class TestTraits(unittest.TestCase):
"""test for hash num_cases with dataset.type set to Probeset"""
create_dataset = TraitObject({"type": "ProbeSet"})
create_trait = TraitObject({"dataset": create_dataset})
-
self.assertFalse(has_num_cases(create_trait))
def test_hash_num_cases_no_probeset(self):
"""test for hash num cases with dataset.type not Probeset"""
create_dataset = TraitObject({"type": "Temp"})
-
construct_data = {
"nm1": TraitObject({"num_cases": False}),
"nm2": TraitObject({"num_cases": True}),
@@ -125,7 +119,6 @@ class TestTraits(unittest.TestCase):
{"dataset": create_dataset, "data": construct_data2})
results = has_num_cases(create_trait)
-
self.assertTrue(has_num_cases(create_trait))
self.assertFalse(has_num_cases(create_trait2))
@@ -144,7 +137,6 @@ class TestTraits(unittest.TestCase):
expected_with_numcase = (450, "750px")
expected_no_numcase = (450, "670px")
expected_one_sample = (250, "540px")
-
self.assertEqual(results_with_numcase, expected_with_numcase)
self.assertEqual(result_no_numcase, expected_no_numcase)
self.assertEqual(results_one_sample,
@@ -154,7 +146,6 @@ class TestTraits(unittest.TestCase):
"""test for getting categorical variable names with no samples"""
trait = TraitObject({})
sample_list = TraitObject({"se_exists": True, "attributes": []})
-
self.assertEqual(get_categorical_variables(trait, sample_list), [])
def test_get_categorical_variables_with_sample_attributes(self):
@@ -179,9 +170,7 @@ class TestTraits(unittest.TestCase):
"""test for getting trait units"""
trait = TraitObject(
{"description_fmt": "[this is a description] another test [N/A]"})
-
trait_no_unit_type = TraitObject({"description_fmt": ""})
-
results = get_trait_units(trait)
results_no_unit = get_trait_units(trait_no_unit_type)
self.assertEqual(results, "this is a descriptionN/A")
@@ -195,13 +184,9 @@ class TestTraits(unittest.TestCase):
["Geno1", "Geno2"], ["Geno3"]]
trait = TraitObject({"locus_chr": "test_chr", "locus_mb": "test_mb"})
-
group_name = TraitObject({"name": "group_name"})
-
this_db = TraitObject({"group": group_name})
-
results_with_item_db = get_nearest_marker(trait, this_db)
-
called_with_value = """SELECT Geno.Name
FROM Geno, GenoXRef, GenoFreeze
WHERE Geno.Chr = 'test_chr' AND
@@ -218,11 +203,9 @@ class TestTraits(unittest.TestCase):
def test_get_nearest_marker_empty_db(self, mock_db):
"""test for getting nearest marker with empty db"""
mock_db.db.execute.return_value.fetchall.return_value = []
-
trait = TraitObject({"locus_chr": "test_chr", "locus_mb": "test_mb"})
group_name = TraitObject({"name": "group_name"})
this_db = TraitObject({"group": group_name})
-
results_empty_db = get_nearest_marker(trait, this_db)
mock_db.db.execute.assert_called_once()
self.assertEqual(results_empty_db, "")
@@ -240,7 +223,6 @@ class TestTraits(unittest.TestCase):
[["physic", "Mb"]]]
results = get_genotype_scales(genofiles_list)
-
expected_results = {
"~/data/files/f1": [["morgan", "cM"]],
"~/data/files/f2": [["morgan", "cM"]],
@@ -249,7 +231,6 @@ class TestTraits(unittest.TestCase):
multiple_calls = [mock.call('~/data/files/f1'), mock.call('~/data/files/f2'),
mock.call('~/data/files/f3')]
-
mock_get_scales.assert_has_calls(multiple_calls)
self.assertEqual(results, expected_results)
@@ -258,8 +239,6 @@ class TestTraits(unittest.TestCase):
"""test for getting genotype scales with genofile as a string"""
file_location = "~/another_file_location"
mock_get_scales.return_value = [["physic", "Mb"]]
-
expected_results = {f"{file_location}": [["physic", "Mb"]]}
-
self.assertEqual(get_genotype_scales(file_location), expected_results)
mock_get_scales.assert_called_once_with(file_location)
--
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