From 99fae55d98e7042e0caf29c34fb77ee17efaafa2 Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Thu, 30 Jul 2020 16:13:39 +0300
Subject: Add tests for "build_datasets"

* wqflask/tests/api/test_gen_menu.py: Add new tests for "build_datasets"
function
---
 wqflask/tests/api/test_gen_menu.py | 66 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 66 insertions(+)

(limited to 'wqflask/tests')

diff --git a/wqflask/tests/api/test_gen_menu.py b/wqflask/tests/api/test_gen_menu.py
index be66a4c6..ec380b6f 100644
--- a/wqflask/tests/api/test_gen_menu.py
+++ b/wqflask/tests/api/test_gen_menu.py
@@ -6,6 +6,7 @@ from wqflask.api.gen_menu import get_species
 from wqflask.api.gen_menu import get_groups
 from wqflask.api.gen_menu import phenotypes_exist
 from wqflask.api.gen_menu import genotypes_exist
+from wqflask.api.gen_menu import build_datasets
 
 
 class TestGenMenu(unittest.TestCase):
@@ -111,3 +112,68 @@ class TestGenMenu(unittest.TestCase):
             db_mock.db.execute.return_value.fetchone.return_value = (x)
             self.assertTrue(phenotypes_exist("test"))
 
+
+    @mock.patch('wqflask.api.gen_menu.g')
+    def test_build_datasets_with_type_phenotypes(self, db_mock):
+        """Test that correct dataset is returned for a phenotype type"""
+        db_mock.db.execute.return_value.fetchall.return_value = (
+            (602, "BXDPublish", "BXD Published Phenotypes"),
+        )
+        self.assertEqual(build_datasets("Mouse", "BXD", "Phenotypes"),
+                         [['602', "BXDPublish", "BXD Published Phenotypes"]])
+        db_mock.db.execute.assert_called_with(
+            "SELECT InfoFiles.GN_AccesionId, PublishFreeze.Name, " +
+            "PublishFreeze.FullName FROM InfoFiles, PublishFreeze, " +
+            "InbredSet WHERE InbredSet.Name = 'BXD' AND " +
+            "PublishFreeze.InbredSetId = InbredSet.Id AND " +
+            "InfoFiles.InfoPageName = PublishFreeze.Name " +
+            "ORDER BY PublishFreeze.CreateTime ASC"
+        )
+        self.assertEqual(build_datasets("Mouse", "MDP", "Phenotypes"),
+                         [['602', "BXDPublish", "Mouse Phenome Database"]])
+
+        db_mock.db.execute.return_value.fetchall.return_value = ()
+        db_mock.db.execute.return_value.fetchone.return_value = (
+            "BXDPublish", "Mouse Phenome Database"
+        )
+        self.assertEqual(build_datasets("Mouse", "MDP", "Phenotypes"),
+                         [["None", "BXDPublish", "Mouse Phenome Database"]])
+
+    @mock.patch('wqflask.api.gen_menu.g')
+    def test_build_datasets_with_type_genotypes(self, db_mock):
+        """Test that correct dataset is returned for a phenotype type"""
+        db_mock.db.execute.return_value.fetchone.return_value = (
+            635, "HLCPublish", "HLC Published Genotypes"
+        )
+
+        self.assertEqual(build_datasets("Mouse", "HLC", "Genotypes"),
+                         [["635", "HLCGeno", "HLC Genotypes"]])
+        db_mock.db.execute.assert_called_with(
+            "SELECT InfoFiles.GN_AccesionId FROM InfoFiles, GenoFreeze, InbredSet " +
+            "WHERE InbredSet.Name = 'HLC' AND GenoFreeze.InbredSetId = InbredSet.Id AND " +
+            "InfoFiles.InfoPageName = GenoFreeze.ShortName " +
+            "ORDER BY GenoFreeze.CreateTime DESC"
+        )
+        db_mock.db.execute.return_value.fetchone.return_value = ()
+        self.assertEqual(build_datasets("Mouse", "HLC", "Genotypes"),
+                         [["None", "HLCGeno", "HLC Genotypes"]])
+
+    @mock.patch('wqflask.api.gen_menu.g')
+    def test_build_datasets_with_type_mrna(self, db_mock):
+        """Test that correct dataset is returned for a mRNA expression/ Probeset"""
+        db_mock.db.execute.return_value.fetchall.return_value = (
+            (112, "HC_M2_0606_P",
+             "Hippocampus Consortium M430v2 (Jun06) PDNN"), )
+        self.assertEqual(build_datasets("Mouse", "HLC", "mRNA"), [[
+            "112", 'HC_M2_0606_P', "Hippocampus Consortium M430v2 (Jun06) PDNN"
+        ]])
+        db_mock.db.execute.assert_called_once_with(
+            "SELECT ProbeSetFreeze.Id, ProbeSetFreeze.Name, " +
+            "ProbeSetFreeze.FullName FROM ProbeSetFreeze, " +
+            "ProbeFreeze, InbredSet, Tissue, Species WHERE " +
+            "Species.Name = 'Mouse' AND Species.Id = " +
+            "InbredSet.SpeciesId AND InbredSet.Name = 'HLC' AND " +
+            "ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and " +
+            "Tissue.Name = 'mRNA' AND ProbeFreeze.TissueId = " +
+            "Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id " +
+            "ORDER BY ProbeSetFreeze.CreateTime DESC")
-- 
cgit v1.2.3