From 204a308be0f741726b9a620d88fbc22b22124c81 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Fri, 29 Dec 2023 18:55:37 +0000
Subject: Namespace all modules under gn2.

We move all modules under a gn2 directory. This is important for
"correct" packaging and deployment as a Guix service.
---
 .../tests/unit/base/test_mrna_assay_tissue_data.py | 81 ----------------------
 1 file changed, 81 deletions(-)
 delete mode 100644 wqflask/tests/unit/base/test_mrna_assay_tissue_data.py

(limited to 'wqflask/tests/unit/base/test_mrna_assay_tissue_data.py')

diff --git a/wqflask/tests/unit/base/test_mrna_assay_tissue_data.py b/wqflask/tests/unit/base/test_mrna_assay_tissue_data.py
deleted file mode 100644
index c43fb4b6..00000000
--- a/wqflask/tests/unit/base/test_mrna_assay_tissue_data.py
+++ /dev/null
@@ -1,81 +0,0 @@
-import pytest
-from base.mrna_assay_tissue_data import MrnaAssayTissueData
-
-
-@pytest.mark.parametrize(
-    ('gene_symbols', 'expected_query', 'sql_fetch_all_results'),
-    (
-        (None,
-         (("SELECT t.Symbol, t.GeneId, t.DataId, "
-           "t.Chr, t.Mb, t.description, "
-           "t.Probe_Target_Description "
-           "FROM (SELECT Symbol, "
-           "max(Mean) AS maxmean "
-           "FROM TissueProbeSetXRef WHERE "
-           "TissueProbeSetFreezeId=1 AND "
-           "Symbol != '' AND Symbol IS NOT "
-           "Null GROUP BY Symbol) "
-           "AS x INNER JOIN TissueProbeSetXRef "
-           "AS t ON t.Symbol = x.Symbol "
-           "AND t.Mean = x.maxmean"),),
-         (("symbol", "gene_id",
-           "data_id", "chr", "mb",
-           "description",
-           "probe_target_description"),)),
-        (["k1", "k2", "k3"],
-         ("SELECT t.Symbol, t.GeneId, t.DataId, "
-          "t.Chr, t.Mb, t.description, "
-          "t.Probe_Target_Description FROM (SELECT Symbol, "
-          "max(Mean) AS maxmean "
-          "FROM TissueProbeSetXRef WHERE "
-          "TissueProbeSetFreezeId=1 AND "
-          "Symbol IN (%s, %s, %s) "
-          "GROUP BY Symbol) AS x INNER JOIN "
-          "TissueProbeSetXRef AS "
-          "t ON t.Symbol = x.Symbol "
-          "AND t.Mean = x.maxmean",
-          ("k1", "k2", "k3")),
-         (("k1", "203",
-           "112", "xy", "20.11",
-           "Sample Description",
-           "Sample Probe Target Description"),)),
-    ),
-)
-def test_mrna_assay_tissue_data_initialisation(mocker, gene_symbols,
-                                               expected_query,
-                                               sql_fetch_all_results):
-    mock_conn = mocker.MagicMock()
-    with mock_conn.cursor() as cursor:
-        cursor.fetchall.return_value = sql_fetch_all_results
-        MrnaAssayTissueData(conn=mock_conn, gene_symbols=gene_symbols)
-        cursor.execute.assert_called_with(*expected_query)
-
-
-def test_get_trait_symbol_and_tissue_values(mocker):
-    """Test for getting trait symbol and tissue_values"""
-    mock_conn = mocker.MagicMock()
-    with mock_conn.cursor() as cursor:
-        cursor.fetchall.side_effect = [
-            (("k1", "203",
-              "112", "xy", "20.11",
-              "Sample Description",
-              "Sample Probe Target Description"),),
-            (("k1", "v1"),
-             ("k2", "v2"),
-             ("k3", "v3")),
-        ]
-        _m = MrnaAssayTissueData(conn=mock_conn,
-                                 gene_symbols=["k1", "k2", "k3"])
-        assert _m.get_symbol_values_pairs() == {
-            "k1": ["v1"],
-            "k2": ["v2"],
-            "k3": ["v3"],
-        }
-        cursor.execute.assert_called_with(
-            "SELECT TissueProbeSetXRef.Symbol, "
-            "TissueProbeSetData.value FROM "
-            "TissueProbeSetXRef, TissueProbeSetData "
-            "WHERE TissueProbeSetData.Id IN (%s) "
-            "AND TissueProbeSetXRef.DataId = "
-            "TissueProbeSetData.Id",
-            ('112',))
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