From ee6ce155a4816bf937e7a4facb622d5f17fd394f Mon Sep 17 00:00:00 2001 From: root Date: Wed, 19 Feb 2014 14:01:30 -0600 Subject: Committer: root On branch master --- wqflask/maintenance/dataset/load_phenotypes.py | 15 ++++++++++++++- 1 file changed, 14 insertions(+), 1 deletion(-) (limited to 'wqflask/maintenance') diff --git a/wqflask/maintenance/dataset/load_phenotypes.py b/wqflask/maintenance/dataset/load_phenotypes.py index 91bc2d15..274b8593 100644 --- a/wqflask/maintenance/dataset/load_phenotypes.py +++ b/wqflask/maintenance/dataset/load_phenotypes.py @@ -1,13 +1,26 @@ import sys +import csv import utilities def main(argv): + # config = utilities.get_config(argv[1]) print "config:" for item in config.items('config'): print "\t%s" % (str(item)) - + # + datafile = open(config.get('config', 'datafile'), 'r') + phenotypedata = csv.reader(datafile, delimiter='\t', quotechar='"') + for row in phenotypedata: + #print row + pass + # + metafile = open(config.get('config', 'metafile'), 'r') + phenotypemeta = csv.reader(metafile, delimiter='\t', quotechar='"') + for row in phenotypemeta: + print row[1] + if __name__ == "__main__": print "command line arguments:\n\t%s" % sys.argv main(sys.argv) -- cgit v1.2.3