From 562e7ba9b6b5a051da1a9f0a046f39f480998be8 Mon Sep 17 00:00:00 2001
From: Lei Yan
Date: Sat, 22 Feb 2014 22:04:38 -0600
Subject: On branch master

---
 .../maintenance/dataset/datasampledir/load_genotypes/config.ini  | 2 +-
 wqflask/maintenance/dataset/load_genotypes.py                    | 9 ++++++++-
 2 files changed, 9 insertions(+), 2 deletions(-)

(limited to 'wqflask/maintenance')

diff --git a/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini b/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini
index 6f2adbd2..7b2fba9d 100644
--- a/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini
+++ b/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini
@@ -1,5 +1,5 @@
 [config]
-speciesid = 1
+inbredsetid = 1
 genofile = datasampledir/load_genotypes/sample.geno
 U = x
 H = 0
diff --git a/wqflask/maintenance/dataset/load_genotypes.py b/wqflask/maintenance/dataset/load_genotypes.py
index bca99b95..124d3776 100644
--- a/wqflask/maintenance/dataset/load_genotypes.py
+++ b/wqflask/maintenance/dataset/load_genotypes.py
@@ -11,7 +11,14 @@ def main(argv):
     for item in config.items('config'):
         print "\t%s" % (str(item))
     # variables
-    speciesid = config.get('config', 'speciesid')
+    inbredsetid = config.get('config', 'inbredsetid')
+    print "inbredsetid: %s" % inbredsetid
+    species = datastructure.get_species(inbredsetid)
+    speciesid = species[0]
+    print "speciesid: %s" % speciesid
+    genofreeze = datastructure.get_genofreeze_byinbredsetid(inbredsetid)
+    genofreezeid = genofreeze[0]
+    print "genofreezeid: %s" % genofreezeid
     genofile = open(config.get('config', 'genofile'), 'r')
     metadic = {}
     # parse genofile
-- 
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