From 30889320c00673660d194fc03b912d1832e5a6ed Mon Sep 17 00:00:00 2001
From: Lei Yan
Date: Sat, 22 Feb 2014 21:41:31 -0600
Subject: On branch master

---
 .../maintenance/dataset/datasampledir/load_genotypes/config.ini  | 1 +
 wqflask/maintenance/dataset/load_genotypes.py                    | 9 ++++++++-
 2 files changed, 9 insertions(+), 1 deletion(-)

(limited to 'wqflask/maintenance')

diff --git a/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini b/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini
index 1f977cf8..6f2adbd2 100644
--- a/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini
+++ b/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini
@@ -1,4 +1,5 @@
 [config]
+speciesid = 1
 genofile = datasampledir/load_genotypes/sample.geno
 U = x
 H = 0
diff --git a/wqflask/maintenance/dataset/load_genotypes.py b/wqflask/maintenance/dataset/load_genotypes.py
index 204fb926..0ae2c5cd 100644
--- a/wqflask/maintenance/dataset/load_genotypes.py
+++ b/wqflask/maintenance/dataset/load_genotypes.py
@@ -2,6 +2,7 @@ import sys
 import re
 
 import utilities
+import datastructure
 
 def main(argv):
     # config
@@ -10,6 +11,7 @@ def main(argv):
     for item in config.items('config'):
         print "\t%s" % (str(item))
     # variables
+    speciesid = config.get('config', 'speciesid')
     genofile = open(config.get('config', 'genofile'), 'r')
     metadic = {}
     # parse genofile
@@ -27,9 +29,14 @@ def main(argv):
                 metadic[kv[0].strip()] = kv[1].strip()
             continue
         if line.lower().startswith("chr"):
-            print "geno meta:"
+            #
+            print "geno file meta:"
             for k, v in metadic.items():
                 print "\t%s: %s" % (k, v)
+            #
+            print "geno file head:\n\t%s" % line
+            strainnames = line.split()[4:]
+            strains = datastructure.get_strains_bynames(speciesid, strainnames)
             continue
         cells = line.split()
         Chr = cells[0]
-- 
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