From d53c70c1f2eb71077086ca7ad13eb59158d1351b Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Fri, 19 Oct 2012 14:39:37 -0500
Subject: Reindented genSelectDatasetJS as gen_select_dataset
---
wqflask/maintenance/gen_select_dataset.py | 640 ++++++++++++++++++++++++++++++
1 file changed, 640 insertions(+)
create mode 100644 wqflask/maintenance/gen_select_dataset.py
(limited to 'wqflask/maintenance')
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py
new file mode 100644
index 00000000..7d2605c1
--- /dev/null
+++ b/wqflask/maintenance/gen_select_dataset.py
@@ -0,0 +1,640 @@
+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by NL 2011/01/27
+
+# created by Ning Liu 07/01/2010
+# This script is to generate selectDatasetMenu.js file for cascade menu in the main search page http://www.genenetwork.org/.
+# This script will be run automatically every one hour or manually when database has been changed .
+
+from __future__ import print_function, division
+
+import sys, os
+
+current_file_name = __file__
+pathname = os.path.dirname( current_file_name )
+abs_path = os.path.abspath(pathname)
+sys.path.insert(0, abs_path + '/..')
+
+import MySQLdb
+import os
+import string
+import time
+import datetime
+
+from base import template
+from base import webqtlConfig
+
+#################################################################################
+# input: searchArray, targetValue
+# function: retrieve index info of target value in designated array (searchArray)
+# output: return index info
+##################################################################################
+def getIndex(searchArray=None, targetValue=None):
+ for index in range(len(searchArray)):
+ if searchArray[index][0]==targetValue:
+ return index
+
+# build MySql database connection
+con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER, user=webqtlConfig.DB_USER,passwd=webqtlConfig.DB_PASSWD)
+cursor = con.cursor()
+
+# create js_select.js file
+fileHandler = open(webqtlConfig.HTMLPATH + 'javascript/selectDatasetMenu.js', 'w')
+
+# define SpeciesString, GroupString, TypeString, DatabasingString, LinkageString for output
+# outputSpeciesStr is for building Species Array(sArr) in js file; outputGroupStr is for Group Array(gArr)
+# outputTypeStr is for Type Array(tArr); outputDatabaseStr is for Database Array(dArr)
+# outputLinkStr is for Linkage Array(lArr)
+outputTimeStr ="/* Generated Date : %s , Time : %s */ \n" % (datetime.date.today(),time.strftime("%H:%M ", time.localtime()))
+outputTimeStr =""
+outputSpeciesStr ='var sArr = [\n{txt:\'\',val:\'\'},\n'
+outputGroupStr ='var gArr = [\n{txt:\'\',val:\'\'},\n'
+outputTypeStr ='var tArr = [\n{txt:\'\',val:\'\'},\n'
+outputDatabaseStr ='var dArr = [\n{txt:\'\',val:\'\'},\n'
+outputLinkStr ='var lArr = [\n null,\n'
+
+# built speices array in js file for select menu in the main search page http://www.genenetwork.org/
+cursor.execute("select Name, MenuName from Species order by OrderId")
+speciesResult = cursor.fetchall()
+speciesTotalResult = list(speciesResult)
+speciesResultsTotalNum = cursor.rowcount
+if speciesResultsTotalNum >0:
+ for speciesItem in speciesResult:
+ speciesVal = speciesItem[0]
+ speciesTxt = speciesItem[1]
+ outputSpeciesStr += '{txt:\'%s\',val:\'%s\'},\n'%(speciesTxt,speciesVal)
+# 'All Species' option for 'Species' select menu
+outputSpeciesStr +='{txt:\'All Species\',val:\'All Species\'}];\n\n'
+#speciesTotalResult is a list which inclues all species' options
+speciesTotalResult.append(('All Species','All Species'))
+
+# built group array in js file for select menu in the main search page http://www.genenetwork.org/
+cursor.execute("select distinct InbredSet.Name, InbredSet.FullName from InbredSet, Species, ProbeFreeze, GenoFreeze, PublishFreeze where InbredSet.SpeciesId= Species.Id and InbredSet.Name != 'BXD300' and (PublishFreeze.InbredSetId = InbredSet.Id or GenoFreeze.InbredSetId = InbredSet.Id or ProbeFreeze.InbredSetId = InbredSet.Id) order by InbredSet.Name")
+groupResults = cursor.fetchall()
+groupTotalResults = list(groupResults)
+groupResultsTotalNum = cursor.rowcount
+if groupResultsTotalNum > 0:
+ for groupItem in groupResults:
+ groupVal = groupItem[0]
+ groupTxt = groupItem[1]
+ outputGroupStr += '{txt:\'%s\',val:\'%s\'},\n'%(groupTxt,groupVal)
+# add 'All Groups' option for 'Group' select menu
+outputGroupStr +='{txt:\'All Groups\',val:\'all groups\'}];\n\n'
+# groupTotalResults is a list which inclues all groups' options
+groupTotalResults.append(('all groups','All Groups'))
+
+# built type array in js file for select menu in the main search page http://www.genenetwork.org/
+cross = groupVal
+cursor.execute("select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue where ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeSetFreeze.public > %d order by Tissue.Name" % (webqtlConfig.PUBLICTHRESH))
+typeResults = cursor.fetchall()
+typeTotalResults = list(typeResults)
+typeResultsTotalNum = cursor.rowcount
+if typeResultsTotalNum > 0:
+ for typeItem in typeResults:
+ typeVal = typeItem[0]
+ typeTxt = typeItem[1]
+ outputTypeStr += '{txt:\'%s\',val:\'%s\'},\n'%(typeTxt,typeVal)
+# add 'Phenotypes' and 'Genotypes' options for 'Type' select menu
+outputTypeStr +='{txt:\'Phenotypes\',val:\'Phenotypes\'},\n'
+outputTypeStr +='{txt:\'Genotypes\',val:\'Genotypes\'}];\n\n'
+# typeTotalResults is a list which inclues all types' options
+typeTotalResults.append(('Phenotypes','Phenotypes'))
+typeTotalResults.append(('Genotypes','Genotypes'))
+
+# built dataset array in js file for select menu in the main search page http://www.genenetwork.org/
+tissue = typeVal
+cursor.execute("select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue where ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and ProbeSetFreeze.public > %d order by ProbeSetFreeze.CreateTime desc" % (webqtlConfig.PUBLICTHRESH))
+datasetResults = cursor.fetchall()
+datasetTotalResults = list(datasetResults)
+datasetResultsTotalNum = cursor.rowcount
+if datasetResultsTotalNum > 0:
+ for datasetItem in datasetResults:
+ datasetVal = datasetItem[0]
+ datasetTxt = datasetItem[1]
+ outputDatabaseStr += '{txt:\'%s\',val:\'%s\'},\n'%(datasetTxt,datasetVal)
+
+# This part is to built linkage array in js file, the linkage is among Species, Group, Type and Database.
+# The format of linkage array is [speciesIndex, groupIndex, typeIndex, databaseIndex]
+if speciesResultsTotalNum >0:
+ for speciesItem in speciesResult:
+ speciesVal = speciesItem[0]
+ sIndex = getIndex(searchArray=speciesTotalResult,targetValue=speciesVal)+1
+
+ # retrieve group info based on specie
+ cursor.execute("select distinct InbredSet.Name, InbredSet.FullName from InbredSet, Species, ProbeFreeze, GenoFreeze, PublishFreeze where InbredSet.SpeciesId= Species.Id and Species.Name='%s' and InbredSet.Name != 'BXD300' and (PublishFreeze.InbredSetId = InbredSet.Id or GenoFreeze.InbredSetId = InbredSet.Id or ProbeFreeze.InbredSetId = InbredSet.Id) order by InbredSet.Name" % speciesVal)
+ groupResults = cursor.fetchall()
+ groupResultsNum = cursor.rowcount
+
+ if groupResultsNum > 0:
+ for groupItem in groupResults:
+ groupVal = groupItem[0]
+ gIndex = getIndex(searchArray=groupTotalResults, targetValue=groupVal)+1
+
+ cross = groupVal
+ # if group also exists in PublishFreeze table, then needs to add related Published Phenotypes in Database Array(dArr) and Linkage Array(lArr)
+ # 'MDP' case is related to 'Mouse Phenome Database'
+ cursor.execute("select PublishFreeze.Id from PublishFreeze, InbredSet where PublishFreeze.InbredSetId = InbredSet.Id and InbredSet.Name = '%s'" % cross)
+ if (cursor.fetchall()):
+ typeVal = "Phenotypes"
+ if cross=='MDP':
+ datasetTxt = "Mouse Phenome Database"
+ else:
+ datasetTxt = "%s Published Phenotypes" % cross
+ datasetVal = "%sPublish" % cross
+ outputDatabaseStr += '{txt:\'%s\',val:\'%s\'},\n'% (datasetTxt,datasetVal)
+ datasetTotalResults.append(('%s'% datasetVal,'%s' % datasetTxt))
+
+ tIndex = getIndex(searchArray=typeTotalResults,targetValue=typeVal)+1
+ dIndex = getIndex(searchArray=datasetTotalResults, targetValue=datasetVal)+1
+ outputLinkStr +='[%d,%d,%d,%d],\n'%(sIndex,gIndex,tIndex,dIndex)
+
+ # if group also exists in GenoFreeze table, then needs to add related Genotypes in database Array(dArr)
+ cursor.execute("select GenoFreeze.Id from GenoFreeze, InbredSet where GenoFreeze.InbredSetId = InbredSet.Id and InbredSet.Name = '%s'" % cross)
+ if (cursor.fetchall()):
+ typeVal = "Genotypes"
+ datasetTxt = "%s Genotypes" % cross
+ datasetVal = "%sGeno" % cross
+ outputDatabaseStr += '{txt:\'%s\',val:\'%s\'},\n'%(datasetTxt,datasetVal)
+ typeTotalResults.append(('Genotypes','Genotypes'))
+ datasetTotalResults.append(('%s'% datasetVal,'%s' % datasetTxt))
+
+ tIndex = getIndex(searchArray=typeTotalResults,targetValue=typeVal)+1
+ dIndex = getIndex(searchArray=datasetTotalResults, targetValue=datasetVal)+1
+ outputLinkStr +='[%d,%d,%d,%d],\n'%(sIndex,gIndex,tIndex,dIndex)
+
+ # retrieve type(tissue) info based on group
+ # if cross is equal to 'BXD', then need to seach for 'BXD' and 'BXD300' InbredSet
+ if cross == "BXD":
+ cross2 = "BXD', 'BXD300"
+ else:
+ cross2 = cross
+ cursor.execute("select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue where ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and InbredSet.Name in ('%s') and ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeSetFreeze.public > %d order by Tissue.Name" % (cross2, webqtlConfig.PUBLICTHRESH))
+ typeResults = cursor.fetchall()
+ typeResultsNum = cursor.rowcount
+
+ if typeResultsNum > 0:
+ for typeItem in typeResults:
+ typeVal = typeItem[0]
+ tIndex = getIndex(searchArray=typeTotalResults, targetValue=typeVal)+1
+ # retrieve database(dataset) info based on group(InbredSet) and type(Tissue)
+ tissue = typeVal
+ cursor.execute("select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue where ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and InbredSet.Name in ('%s') and Tissue.name = '%s' and ProbeSetFreeze.public > %d order by ProbeSetFreeze.CreateTime desc" % (cross2, tissue, webqtlConfig.PUBLICTHRESH))
+ datasetResults = cursor.fetchall()
+ datasetResultsNum = cursor.rowcount
+
+ if datasetResultsNum > 0:
+ for datasetItem in datasetResults:
+ datasetVal = datasetItem[0]
+ dIndex = getIndex(searchArray=datasetTotalResults, targetValue=datasetVal)+1
+ outputLinkStr +='[%d,%d,%d,%d],\n'%(sIndex,gIndex,tIndex,dIndex)
+
+# add 'All Phenotypes' option for 'Database' select menu
+# for 'All Species'option in 'Species' select menu, 'Database' select menu will show 'All Phenotypes' option
+outputDatabaseStr += '{txt:\'%s\',val:\'%s\'}];\n\n'%('All Phenotypes','_allPublish')
+datasetTotalResults.append(('_allPublish','All Phenotypes'))
+
+sIndex = getIndex(searchArray=speciesTotalResult,targetValue='All Species')+1
+gIndex = getIndex(searchArray=groupTotalResults, targetValue='all groups')+1
+tIndex = getIndex(searchArray=typeTotalResults,targetValue='Phenotypes')+1
+dIndex = getIndex(searchArray=datasetTotalResults, targetValue='_allPublish')+1
+outputLinkStr +='[%d,%d,%d,%d]];\n\n'%(sIndex,gIndex,tIndex,dIndex)
+
+# Combine sArr, gArr, tArr, dArr and lArr output string together
+outputStr = outputTimeStr+outputSpeciesStr+outputGroupStr+outputTypeStr+outputDatabaseStr+outputLinkStr
+outputStr +='''
+
+/*
+* function: based on different browser use, will have different initial actions;
+* Once the index.html page is loaded, this function will be called
+*/
+function initialDatasetSelection()
+{
+ defaultSpecies =getDefaultValue('species');
+ defaultSet =getDefaultValue('cross');
+ defaultType =getDefaultValue('tissue');
+ defaultDB =getDefaultValue('database');
+
+ if (navigator.userAgent.indexOf('MSIE')>=0)
+ {
+ sOptions = fillOptionsForIE(null,defaultSpecies);
+ var menu0 ="";
+ document.getElementById('menu0').innerHTML = menu0;
+
+ gOptions = fillOptionsForIE('species',defaultSet);
+ var menu1 ="";
+ document.getElementById('menu1').innerHTML =menu1;
+
+ tOptions = fillOptionsForIE('cross',defaultType);
+ var menu2 ="";
+ document.getElementById('menu2').innerHTML =menu2;
+
+ dOptions = fillOptionsForIE('tissue',defaultDB);
+ var menu3 ="";
+ document.getElementById('menu3').innerHTML =menu3;
+
+ }else{
+ fillOptions(null);
+ }
+ searchtip();
+}
+
+/*
+* input: selectObjId (designated select menu, such as species, cross, etc... )
+* defaultValue (default Value of species, cross,tissue or database)
+* function: special for IE browser,setting options value for select menu dynamically based on linkage array(lArr),
+* output: options string
+*/
+function fillOptionsForIE(selectObjId,defaultValue)
+{
+ var options='';
+ if(selectObjId==null)
+ {
+ var len = sArr.length;
+ for (var i=1; i < len; i++) {
+ // setting Species' option
+ if( sArr[i].val==defaultValue){
+ options =options+"";
+ }else{
+ options =options+"";
+ }
+ }
+ }else if(selectObjId=='species')
+ {
+ var speciesObj = document.getElementById('species');
+ var len = lArr.length;
+ var arr = [];
+ var idx = 0;
+ for (var i=1; i < len; i++) {
+ //get group(cross) info from lArr
+ if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&!Contains(arr,lArr[i][1]))
+ {
+ arr[idx++]=lArr[i][1];
+ }
+ }
+ idx=0;
+ len = arr.length;
+ removeOptions("cross");
+ for (var i=0; i < len; i++) {
+ // setting Group's option
+ if( gArr[arr[i]].val==defaultValue){
+ options =options+"";
+ }else{
+ options =options+"";
+ }
+
+ }
+ }else if(selectObjId=='cross')
+ {
+ var speciesObj = document.getElementById('species');
+ var groupObj = document.getElementById('cross');
+ var len = lArr.length;
+ var arr = [];
+ var idx = 0;
+ for (var i=1; i < len; i++) {
+ //get type(tissue) info from lArr
+ if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&!Contains(arr,lArr[i][2]))
+ {
+ arr[idx++]=lArr[i][2];
+ }
+ }
+ idx=0;
+ len = arr.length;
+ removeOptions("tissue");
+ for (var i=0; i < len; i++) {
+ // setting Type's option
+ if( tArr[arr[i]].val==defaultValue){
+ options =options+"";
+ }else{
+ options =options+"";
+ }
+ }
+
+ }else if(selectObjId=='tissue')
+ {
+ var speciesObj = document.getElementById('species');
+ var groupObj = document.getElementById('cross');
+ var typeObj = document.getElementById('tissue');
+
+ var len = lArr.length;
+ var arr = [];
+ var idx = 0;
+ for (var i=1; i < len; i++) {
+ //get dataset(database) info from lArr
+ if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&lArr[i][2]==(getIndexByValue('tissue',typeObj.value)).toString()&&!Contains(arr,lArr[i][3]))
+ {
+ arr[idx++]=lArr[i][3];
+ }
+ }
+ idx=0;
+ len = arr.length;
+ removeOptions("database");
+ for (var i=0; i < len; i++) {
+ // setting Database's option
+ if( dArr[arr[i]].val==defaultValue){
+ options =options+"";
+ }else{
+ options =options+"";
+ }
+ }
+ }
+ return options;
+}
+/*
+* input: selectObjId (designated select menu, such as species, cross, etc... )
+* function: setting options value for select menu dynamically based on linkage array(lArr)
+* output: null
+*/
+function fillOptions(selectObjId)
+{
+ if(selectObjId==null)
+ {
+
+ var speciesObj = document.getElementById('species');
+ var len = sArr.length;
+ for (var i=1; i < len; i++) {
+ // setting Species' option
+ speciesObj.options[i-1] = new Option(sArr[i].txt, sArr[i].val);
+ }
+ updateChocie('species');
+
+ }else if(selectObjId=='species')
+ {
+ var speciesObj = document.getElementById('species');
+ var groupObj = document.getElementById('cross');
+ var len = lArr.length;
+ var arr = [];
+ var idx = 0;
+ for (var i=1; i < len; i++) {
+ //get group(cross) info from lArr
+ if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&!Contains(arr,lArr[i][1]))
+ {
+ arr[idx++]=lArr[i][1];
+ }
+ }
+ idx=0;
+ len = arr.length;
+ removeOptions("cross");
+ for (var i=0; i < len; i++) {
+ // setting Group's option
+ groupObj.options[idx++] = new Option(gArr[arr[i]].txt, gArr[arr[i]].val);
+ }
+ updateChocie('cross');
+
+ }else if(selectObjId=='cross')
+ {
+ var speciesObj = document.getElementById('species');
+ var groupObj = document.getElementById('cross');
+ var typeObj = document.getElementById('tissue');
+ var len = lArr.length;
+ var arr = [];
+ var idx = 0;
+ for (var i=1; i < len; i++) {
+ //get type(tissue) info from lArr
+ if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&!Contains(arr,lArr[i][2]))
+ {
+ arr[idx++]=lArr[i][2];
+ }
+ }
+ idx=0;
+ len = arr.length;
+ removeOptions("tissue");
+ for (var i=0; i < len; i++) {
+ // setting Type's option
+ typeObj.options[idx++] = new Option(tArr[arr[i]].txt, tArr[arr[i]].val);
+ }
+ updateChocie('tissue');
+
+ }else if(selectObjId=='tissue')
+ {
+ var speciesObj = document.getElementById('species');
+ var groupObj = document.getElementById('cross');
+ var typeObj = document.getElementById('tissue');
+ var databaseObj = document.getElementById('database');
+
+ var len = lArr.length;
+ var arr = [];
+ var idx = 0;
+ for (var i=1; i < len; i++) {
+ //get dataset(database) info from lArr
+ if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&lArr[i][2]==(getIndexByValue('tissue',typeObj.value)).toString()&&!Contains(arr,lArr[i][3]))
+ {
+ arr[idx++]=lArr[i][3];
+ }
+ }
+ idx=0;
+ len = arr.length;
+ removeOptions("database");
+ for (var i=0; i < len; i++) {
+ // setting Database's option
+ databaseObj.options[idx++] = new Option(dArr[arr[i]].txt, dArr[arr[i]].val);
+ }
+ updateChocie('database');
+ }
+}
+
+/*
+* input: arr (targeted array); obj (targeted value)
+* function: check whether targeted array contains targeted value or not
+* output: return true, if array contains targeted value, otherwise return false
+*/
+function Contains(arr,obj) {
+ var i = arr.length;
+ while (i--) {
+ if (arr[i] == obj) {
+ return true;
+ }
+ }
+ return false;
+}
+
+/*
+* input: selectObj (designated select menu, such as species, cross, etc... )
+* function: clear designated select menu's option
+* output: null
+*/
+function removeOptions(selectObj) {
+ if (typeof selectObj != 'object'){
+ selectObj = document.getElementById(selectObj);
+ }
+ var len = selectObj.options.length;
+ for (var i=0; i < len; i++) {
+ // clear current selection
+ selectObj.options[0] = null;
+ }
+}
+
+/*
+* input: selectObjId (designated select menu, such as species, cross, etc... )
+* Value: target value
+* function: retrieve Index info of target value in designated array
+* output: index info
+*/
+function getIndexByValue(selectObjId,val)
+{
+ if(selectObjId=='species')
+ {
+ for(var i=1;i=0){
+ //setting option's selected status
+ Obj.options[idx].selected=true;
+ //update the following select menu
+ fillOptions(objId);
+ }else{
+ Obj.options[0].selected=true;
+ fillOptions(objId);
+ }
+}
+
+// setting option's selected status based on default setting or cookie setting for Species, Group, Type and Database select menu in the main search page http://www.genenetwork.org/
+function updateChocie(selectObjId){
+
+ if (selectObjId =='species')
+ {
+ defaultSpecies= getDefaultValue('species');
+ //setting option's selected status
+ setChoice('species',defaultSpecies);
+ }else if (selectObjId =='cross')
+ {
+ defaultSet= getDefaultValue('cross');
+ //setting option's selected status
+ setChoice('cross',defaultSet);
+ }else if (selectObjId =='tissue')
+ {
+ defaultType= getDefaultValue('tissue');
+ //setting option's selected status
+ setChoice('tissue',defaultType);
+ }else if (selectObjId =='database')
+ {
+ defaultDB= getDefaultValue('database');
+ //setting option's selected status
+ setChoice('database',defaultDB);
+ }
+}
+
+//get default value;if cookie exists, then use cookie value, otherwise use default value
+function getDefaultValue(selectObjId){
+ //define default value
+ var defaultSpecies = 'mouse'
+ var defaultSet = 'BXD'
+ var defaultType = 'Hippocampus'
+ var defaultDB = 'HC_M2_0606_P'
+
+ if (selectObjId =='species')
+ {
+ //if cookie exists, then use cookie value, otherwise use default value
+ var cookieSpecies = getCookie('defaultSpecies');
+ if(cookieSpecies)
+ {
+ defaultSpecies= cookieSpecies;
+ }
+ return defaultSpecies;
+ }else if (selectObjId =='cross'){
+ var cookieSet = getCookie('defaultSet');
+ if(cookieSet){
+ defaultSet= cookieSet;
+ }
+ return defaultSet;
+ }else if (selectObjId =='tissue'){
+ var cookieType = getCookie('defaultType');
+ if(cookieType){
+ defaultType= cookieType;
+ }
+ return defaultType;
+ }else if (selectObjId =='database')
+ {
+ var cookieDB = getCookie('defaultDB');
+ if(cookieDB){
+ defaultDB= cookieDB;
+ }
+ return defaultDB;
+ }
+
+}
+
+//setting default value into cookies for the dropdown menus: Species,Group, Type, and Database
+function setDefault(thisform){
+
+ setCookie('cookieTest', 'cookieTest', 1);
+ var cookieTest = getCookie('cookieTest');
+ delCookie('cookieTest');
+ if (cookieTest){
+ var defaultSpecies = thisform.species.value;
+ setCookie('defaultSpecies', defaultSpecies, 10);
+ var defaultSet = thisform.cross.value;
+ setCookie('defaultSet', defaultSet, 10);
+ var defaultType = thisform.tissue.value;
+ setCookie('defaultType', defaultType, 10);
+ var defaultDB = thisform.database.value;
+ setCookie('defaultDB', defaultDB, 10);
+ updateChocie('species');
+ updateChocie('cross');
+ updateChocie('tissue');
+ updateChocie('database');
+ alert("The current settings are now your default");
+ }
+ else{
+ alert("You need to enable Cookies in your browser.");
+ }
+}
+
+'''
+# write all strings' info into selectDatasetMenu.js file
+fileHandler.write(outputStr)
+fileHandler.close()
--
cgit v1.2.3
From bbc5e266213e44af5713f7c9a4bbfd7f1035ad1d Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Fri, 19 Oct 2012 18:26:18 -0500
Subject: Finished gen_select_dataset.py which generates the json file that
defines the data structure used for the index page select dropdowns
---
misc/notes.txt | 7 +-
wqflask/maintenance/gen_select_dataset.py | 724 +--
.../new/javascript/dataset_menu_structure.json | 6792 ++++++++++++++++++++
3 files changed, 6917 insertions(+), 606 deletions(-)
create mode 100644 wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
(limited to 'wqflask/maintenance')
diff --git a/misc/notes.txt b/misc/notes.txt
index fab9fac6..c12cd2bb 100644
--- a/misc/notes.txt
+++ b/misc/notes.txt
@@ -17,11 +17,13 @@ python runserver.py
===========================================
-Start screen session
+Start screen session:
byobu -RD (to start)
control-a then :multiuser on
control-a then :acladd sam
+control-a c to create channel
+
type: screen -list for sessions
screen -r zas1024/25679.byobu
@@ -31,6 +33,9 @@ screen -r zas1024/
===========================================
+Start up log:
+Go to /tmp and tail -f flask_gn_log
+
Coffeescript Stuff:
coffee -c (filename)
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py
index 7d2605c1..33813051 100644
--- a/wqflask/maintenance/gen_select_dataset.py
+++ b/wqflask/maintenance/gen_select_dataset.py
@@ -19,622 +19,136 @@
#
#
# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by NL 2011/01/27
-# created by Ning Liu 07/01/2010
-# This script is to generate selectDatasetMenu.js file for cascade menu in the main search page http://www.genenetwork.org/.
-# This script will be run automatically every one hour or manually when database has been changed .
+# This script is to generate the data for the main menus on the home page
+# It needs to be run manually when database has been changed .
from __future__ import print_function, division
-import sys, os
+import sys
-current_file_name = __file__
-pathname = os.path.dirname( current_file_name )
-abs_path = os.path.abspath(pathname)
-sys.path.insert(0, abs_path + '/..')
+sys.path.insert(0, "..")
import MySQLdb
-import os
-import string
-import time
-import datetime
-
-from base import template
-from base import webqtlConfig
-
-#################################################################################
-# input: searchArray, targetValue
-# function: retrieve index info of target value in designated array (searchArray)
-# output: return index info
-##################################################################################
-def getIndex(searchArray=None, targetValue=None):
- for index in range(len(searchArray)):
- if searchArray[index][0]==targetValue:
- return index
-
-# build MySql database connection
-con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER, user=webqtlConfig.DB_USER,passwd=webqtlConfig.DB_PASSWD)
-cursor = con.cursor()
-# create js_select.js file
-fileHandler = open(webqtlConfig.HTMLPATH + 'javascript/selectDatasetMenu.js', 'w')
+import simplejson as json
-# define SpeciesString, GroupString, TypeString, DatabasingString, LinkageString for output
-# outputSpeciesStr is for building Species Array(sArr) in js file; outputGroupStr is for Group Array(gArr)
-# outputTypeStr is for Type Array(tArr); outputDatabaseStr is for Database Array(dArr)
-# outputLinkStr is for Linkage Array(lArr)
-outputTimeStr ="/* Generated Date : %s , Time : %s */ \n" % (datetime.date.today(),time.strftime("%H:%M ", time.localtime()))
-outputTimeStr =""
-outputSpeciesStr ='var sArr = [\n{txt:\'\',val:\'\'},\n'
-outputGroupStr ='var gArr = [\n{txt:\'\',val:\'\'},\n'
-outputTypeStr ='var tArr = [\n{txt:\'\',val:\'\'},\n'
-outputDatabaseStr ='var dArr = [\n{txt:\'\',val:\'\'},\n'
-outputLinkStr ='var lArr = [\n null,\n'
+from pprint import pformat as pf
-# built speices array in js file for select menu in the main search page http://www.genenetwork.org/
-cursor.execute("select Name, MenuName from Species order by OrderId")
-speciesResult = cursor.fetchall()
-speciesTotalResult = list(speciesResult)
-speciesResultsTotalNum = cursor.rowcount
-if speciesResultsTotalNum >0:
- for speciesItem in speciesResult:
- speciesVal = speciesItem[0]
- speciesTxt = speciesItem[1]
- outputSpeciesStr += '{txt:\'%s\',val:\'%s\'},\n'%(speciesTxt,speciesVal)
-# 'All Species' option for 'Species' select menu
-outputSpeciesStr +='{txt:\'All Species\',val:\'All Species\'}];\n\n'
-#speciesTotalResult is a list which inclues all species' options
-speciesTotalResult.append(('All Species','All Species'))
-
-# built group array in js file for select menu in the main search page http://www.genenetwork.org/
-cursor.execute("select distinct InbredSet.Name, InbredSet.FullName from InbredSet, Species, ProbeFreeze, GenoFreeze, PublishFreeze where InbredSet.SpeciesId= Species.Id and InbredSet.Name != 'BXD300' and (PublishFreeze.InbredSetId = InbredSet.Id or GenoFreeze.InbredSetId = InbredSet.Id or ProbeFreeze.InbredSetId = InbredSet.Id) order by InbredSet.Name")
-groupResults = cursor.fetchall()
-groupTotalResults = list(groupResults)
-groupResultsTotalNum = cursor.rowcount
-if groupResultsTotalNum > 0:
- for groupItem in groupResults:
- groupVal = groupItem[0]
- groupTxt = groupItem[1]
- outputGroupStr += '{txt:\'%s\',val:\'%s\'},\n'%(groupTxt,groupVal)
-# add 'All Groups' option for 'Group' select menu
-outputGroupStr +='{txt:\'All Groups\',val:\'all groups\'}];\n\n'
-# groupTotalResults is a list which inclues all groups' options
-groupTotalResults.append(('all groups','All Groups'))
-
-# built type array in js file for select menu in the main search page http://www.genenetwork.org/
-cross = groupVal
-cursor.execute("select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue where ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeSetFreeze.public > %d order by Tissue.Name" % (webqtlConfig.PUBLICTHRESH))
-typeResults = cursor.fetchall()
-typeTotalResults = list(typeResults)
-typeResultsTotalNum = cursor.rowcount
-if typeResultsTotalNum > 0:
- for typeItem in typeResults:
- typeVal = typeItem[0]
- typeTxt = typeItem[1]
- outputTypeStr += '{txt:\'%s\',val:\'%s\'},\n'%(typeTxt,typeVal)
-# add 'Phenotypes' and 'Genotypes' options for 'Type' select menu
-outputTypeStr +='{txt:\'Phenotypes\',val:\'Phenotypes\'},\n'
-outputTypeStr +='{txt:\'Genotypes\',val:\'Genotypes\'}];\n\n'
-# typeTotalResults is a list which inclues all types' options
-typeTotalResults.append(('Phenotypes','Phenotypes'))
-typeTotalResults.append(('Genotypes','Genotypes'))
-
-# built dataset array in js file for select menu in the main search page http://www.genenetwork.org/
-tissue = typeVal
-cursor.execute("select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue where ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and ProbeSetFreeze.public > %d order by ProbeSetFreeze.CreateTime desc" % (webqtlConfig.PUBLICTHRESH))
-datasetResults = cursor.fetchall()
-datasetTotalResults = list(datasetResults)
-datasetResultsTotalNum = cursor.rowcount
-if datasetResultsTotalNum > 0:
- for datasetItem in datasetResults:
- datasetVal = datasetItem[0]
- datasetTxt = datasetItem[1]
- outputDatabaseStr += '{txt:\'%s\',val:\'%s\'},\n'%(datasetTxt,datasetVal)
-
-# This part is to built linkage array in js file, the linkage is among Species, Group, Type and Database.
-# The format of linkage array is [speciesIndex, groupIndex, typeIndex, databaseIndex]
-if speciesResultsTotalNum >0:
- for speciesItem in speciesResult:
- speciesVal = speciesItem[0]
- sIndex = getIndex(searchArray=speciesTotalResult,targetValue=speciesVal)+1
-
- # retrieve group info based on specie
- cursor.execute("select distinct InbredSet.Name, InbredSet.FullName from InbredSet, Species, ProbeFreeze, GenoFreeze, PublishFreeze where InbredSet.SpeciesId= Species.Id and Species.Name='%s' and InbredSet.Name != 'BXD300' and (PublishFreeze.InbredSetId = InbredSet.Id or GenoFreeze.InbredSetId = InbredSet.Id or ProbeFreeze.InbredSetId = InbredSet.Id) order by InbredSet.Name" % speciesVal)
- groupResults = cursor.fetchall()
- groupResultsNum = cursor.rowcount
+from base import webqtlConfig
- if groupResultsNum > 0:
- for groupItem in groupResults:
- groupVal = groupItem[0]
- gIndex = getIndex(searchArray=groupTotalResults, targetValue=groupVal)+1
- cross = groupVal
- # if group also exists in PublishFreeze table, then needs to add related Published Phenotypes in Database Array(dArr) and Linkage Array(lArr)
- # 'MDP' case is related to 'Mouse Phenome Database'
- cursor.execute("select PublishFreeze.Id from PublishFreeze, InbredSet where PublishFreeze.InbredSetId = InbredSet.Id and InbredSet.Name = '%s'" % cross)
- if (cursor.fetchall()):
- typeVal = "Phenotypes"
- if cross=='MDP':
- datasetTxt = "Mouse Phenome Database"
+# build MySql database connection
+Con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER,
+ user=webqtlConfig.DB_USER,
+ passwd=webqtlConfig.DB_PASSWD)
+Cursor = Con.cursor()
+
+
+def get_species():
+ """Build species list"""
+ Cursor.execute("select Name, MenuName from Species order by OrderId")
+ species = list(Cursor.fetchall())
+ return species
+
+
+def get_groups(species):
+ """Build groups list"""
+ groups = {}
+ for species_name, _species_full_name in species:
+ Cursor.execute("""select InbredSet.Name, InbredSet.FullName from InbredSet,
+ Species,
+ ProbeFreeze, GenoFreeze, PublishFreeze where Species.Name = %s
+ and InbredSet.SpeciesId = Species.Id and InbredSet.Name != 'BXD300' and
+ (PublishFreeze.InbredSetId = InbredSet.Id
+ or GenoFreeze.InbredSetId = InbredSet.Id
+ or ProbeFreeze.InbredSetId = InbredSet.Id)
+ group by InbredSet.Name
+ order by InbredSet.Name""", (species_name))
+ groups[species_name] = list(Cursor.fetchall())
+ return groups
+
+
+def get_types(groups):
+ """Build types list"""
+ types = {}
+ for species, group_dict in groups.iteritems():
+ types[species] = {}
+ for group_name, _group_full_name in group_dict:
+ # make group an alias to shorten the code
+ group = types[species][group_name] = [("Phenotypes", "Phenotypes"),
+ ("Genotypes", "Genotypes")]
+ Cursor.execute("""select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from
+ ProbeFreeze,
+ ProbeSetFreeze, InbredSet, Tissue where ProbeFreeze.TissueId = Tissue.Id and
+ ProbeFreeze.InbredSetId = InbredSet.Id and
+ InbredSet.Name = %s and ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and
+ ProbeSetFreeze.public > %s
+ order by Tissue.Name""", (group_name, webqtlConfig.PUBLICTHRESH))
+ group += Cursor.fetchall()
+ return types
+
+
+def get_datasets(types):
+ """Build datasets list"""
+ datasets = {}
+ for species, group_dict in types.iteritems():
+ datasets[species] = {}
+ for group, type_list in group_dict.iteritems():
+ datasets[species][group] = {}
+ for type_name, type_full_name in type_list:
+ dataset_text = dataset_value = None
+ if type_name == "Phenotypes":
+ dataset_value = "%sPublish" % group
+ if group == 'MDP':
+ dataset_text = "Mouse Phenome Database"
else:
- datasetTxt = "%s Published Phenotypes" % cross
- datasetVal = "%sPublish" % cross
- outputDatabaseStr += '{txt:\'%s\',val:\'%s\'},\n'% (datasetTxt,datasetVal)
- datasetTotalResults.append(('%s'% datasetVal,'%s' % datasetTxt))
-
- tIndex = getIndex(searchArray=typeTotalResults,targetValue=typeVal)+1
- dIndex = getIndex(searchArray=datasetTotalResults, targetValue=datasetVal)+1
- outputLinkStr +='[%d,%d,%d,%d],\n'%(sIndex,gIndex,tIndex,dIndex)
-
- # if group also exists in GenoFreeze table, then needs to add related Genotypes in database Array(dArr)
- cursor.execute("select GenoFreeze.Id from GenoFreeze, InbredSet where GenoFreeze.InbredSetId = InbredSet.Id and InbredSet.Name = '%s'" % cross)
- if (cursor.fetchall()):
- typeVal = "Genotypes"
- datasetTxt = "%s Genotypes" % cross
- datasetVal = "%sGeno" % cross
- outputDatabaseStr += '{txt:\'%s\',val:\'%s\'},\n'%(datasetTxt,datasetVal)
- typeTotalResults.append(('Genotypes','Genotypes'))
- datasetTotalResults.append(('%s'% datasetVal,'%s' % datasetTxt))
-
- tIndex = getIndex(searchArray=typeTotalResults,targetValue=typeVal)+1
- dIndex = getIndex(searchArray=datasetTotalResults, targetValue=datasetVal)+1
- outputLinkStr +='[%d,%d,%d,%d],\n'%(sIndex,gIndex,tIndex,dIndex)
-
- # retrieve type(tissue) info based on group
- # if cross is equal to 'BXD', then need to seach for 'BXD' and 'BXD300' InbredSet
- if cross == "BXD":
- cross2 = "BXD', 'BXD300"
+ dataset_text = "%s Published Phenotypes" % group
+
+ elif type_name == "Genotypes":
+ dataset_value = "%sGeno" % group
+ dataset_text = "%s Genotypes" % group
+
+ if dataset_value:
+ datasets[species][group][type_name] = [(dataset_value, dataset_text)]
else:
- cross2 = cross
- cursor.execute("select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue where ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and InbredSet.Name in ('%s') and ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeSetFreeze.public > %d order by Tissue.Name" % (cross2, webqtlConfig.PUBLICTHRESH))
- typeResults = cursor.fetchall()
- typeResultsNum = cursor.rowcount
-
- if typeResultsNum > 0:
- for typeItem in typeResults:
- typeVal = typeItem[0]
- tIndex = getIndex(searchArray=typeTotalResults, targetValue=typeVal)+1
- # retrieve database(dataset) info based on group(InbredSet) and type(Tissue)
- tissue = typeVal
- cursor.execute("select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue where ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and InbredSet.Name in ('%s') and Tissue.name = '%s' and ProbeSetFreeze.public > %d order by ProbeSetFreeze.CreateTime desc" % (cross2, tissue, webqtlConfig.PUBLICTHRESH))
- datasetResults = cursor.fetchall()
- datasetResultsNum = cursor.rowcount
-
- if datasetResultsNum > 0:
- for datasetItem in datasetResults:
- datasetVal = datasetItem[0]
- dIndex = getIndex(searchArray=datasetTotalResults, targetValue=datasetVal)+1
- outputLinkStr +='[%d,%d,%d,%d],\n'%(sIndex,gIndex,tIndex,dIndex)
-
-# add 'All Phenotypes' option for 'Database' select menu
-# for 'All Species'option in 'Species' select menu, 'Database' select menu will show 'All Phenotypes' option
-outputDatabaseStr += '{txt:\'%s\',val:\'%s\'}];\n\n'%('All Phenotypes','_allPublish')
-datasetTotalResults.append(('_allPublish','All Phenotypes'))
-
-sIndex = getIndex(searchArray=speciesTotalResult,targetValue='All Species')+1
-gIndex = getIndex(searchArray=groupTotalResults, targetValue='all groups')+1
-tIndex = getIndex(searchArray=typeTotalResults,targetValue='Phenotypes')+1
-dIndex = getIndex(searchArray=datasetTotalResults, targetValue='_allPublish')+1
-outputLinkStr +='[%d,%d,%d,%d]];\n\n'%(sIndex,gIndex,tIndex,dIndex)
-
-# Combine sArr, gArr, tArr, dArr and lArr output string together
-outputStr = outputTimeStr+outputSpeciesStr+outputGroupStr+outputTypeStr+outputDatabaseStr+outputLinkStr
-outputStr +='''
-
-/*
-* function: based on different browser use, will have different initial actions;
-* Once the index.html page is loaded, this function will be called
-*/
-function initialDatasetSelection()
-{
- defaultSpecies =getDefaultValue('species');
- defaultSet =getDefaultValue('cross');
- defaultType =getDefaultValue('tissue');
- defaultDB =getDefaultValue('database');
-
- if (navigator.userAgent.indexOf('MSIE')>=0)
- {
- sOptions = fillOptionsForIE(null,defaultSpecies);
- var menu0 ="";
- document.getElementById('menu0').innerHTML = menu0;
-
- gOptions = fillOptionsForIE('species',defaultSet);
- var menu1 ="";
- document.getElementById('menu1').innerHTML =menu1;
-
- tOptions = fillOptionsForIE('cross',defaultType);
- var menu2 ="";
- document.getElementById('menu2').innerHTML =menu2;
-
- dOptions = fillOptionsForIE('tissue',defaultDB);
- var menu3 ="";
- document.getElementById('menu3').innerHTML =menu3;
-
- }else{
- fillOptions(null);
- }
- searchtip();
-}
-
-/*
-* input: selectObjId (designated select menu, such as species, cross, etc... )
-* defaultValue (default Value of species, cross,tissue or database)
-* function: special for IE browser,setting options value for select menu dynamically based on linkage array(lArr),
-* output: options string
-*/
-function fillOptionsForIE(selectObjId,defaultValue)
-{
- var options='';
- if(selectObjId==null)
- {
- var len = sArr.length;
- for (var i=1; i < len; i++) {
- // setting Species' option
- if( sArr[i].val==defaultValue){
- options =options+"";
- }else{
- options =options+"";
- }
- }
- }else if(selectObjId=='species')
- {
- var speciesObj = document.getElementById('species');
- var len = lArr.length;
- var arr = [];
- var idx = 0;
- for (var i=1; i < len; i++) {
- //get group(cross) info from lArr
- if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&!Contains(arr,lArr[i][1]))
- {
- arr[idx++]=lArr[i][1];
- }
- }
- idx=0;
- len = arr.length;
- removeOptions("cross");
- for (var i=0; i < len; i++) {
- // setting Group's option
- if( gArr[arr[i]].val==defaultValue){
- options =options+"";
- }else{
- options =options+"";
- }
-
- }
- }else if(selectObjId=='cross')
- {
- var speciesObj = document.getElementById('species');
- var groupObj = document.getElementById('cross');
- var len = lArr.length;
- var arr = [];
- var idx = 0;
- for (var i=1; i < len; i++) {
- //get type(tissue) info from lArr
- if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&!Contains(arr,lArr[i][2]))
- {
- arr[idx++]=lArr[i][2];
- }
- }
- idx=0;
- len = arr.length;
- removeOptions("tissue");
- for (var i=0; i < len; i++) {
- // setting Type's option
- if( tArr[arr[i]].val==defaultValue){
- options =options+"";
- }else{
- options =options+"";
- }
- }
-
- }else if(selectObjId=='tissue')
- {
- var speciesObj = document.getElementById('species');
- var groupObj = document.getElementById('cross');
- var typeObj = document.getElementById('tissue');
-
- var len = lArr.length;
- var arr = [];
- var idx = 0;
- for (var i=1; i < len; i++) {
- //get dataset(database) info from lArr
- if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&lArr[i][2]==(getIndexByValue('tissue',typeObj.value)).toString()&&!Contains(arr,lArr[i][3]))
- {
- arr[idx++]=lArr[i][3];
- }
- }
- idx=0;
- len = arr.length;
- removeOptions("database");
- for (var i=0; i < len; i++) {
- // setting Database's option
- if( dArr[arr[i]].val==defaultValue){
- options =options+"";
- }else{
- options =options+"";
- }
- }
- }
- return options;
-}
-/*
-* input: selectObjId (designated select menu, such as species, cross, etc... )
-* function: setting options value for select menu dynamically based on linkage array(lArr)
-* output: null
-*/
-function fillOptions(selectObjId)
-{
- if(selectObjId==null)
- {
-
- var speciesObj = document.getElementById('species');
- var len = sArr.length;
- for (var i=1; i < len; i++) {
- // setting Species' option
- speciesObj.options[i-1] = new Option(sArr[i].txt, sArr[i].val);
- }
- updateChocie('species');
-
- }else if(selectObjId=='species')
- {
- var speciesObj = document.getElementById('species');
- var groupObj = document.getElementById('cross');
- var len = lArr.length;
- var arr = [];
- var idx = 0;
- for (var i=1; i < len; i++) {
- //get group(cross) info from lArr
- if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&!Contains(arr,lArr[i][1]))
- {
- arr[idx++]=lArr[i][1];
- }
- }
- idx=0;
- len = arr.length;
- removeOptions("cross");
- for (var i=0; i < len; i++) {
- // setting Group's option
- groupObj.options[idx++] = new Option(gArr[arr[i]].txt, gArr[arr[i]].val);
- }
- updateChocie('cross');
-
- }else if(selectObjId=='cross')
- {
- var speciesObj = document.getElementById('species');
- var groupObj = document.getElementById('cross');
- var typeObj = document.getElementById('tissue');
- var len = lArr.length;
- var arr = [];
- var idx = 0;
- for (var i=1; i < len; i++) {
- //get type(tissue) info from lArr
- if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&!Contains(arr,lArr[i][2]))
- {
- arr[idx++]=lArr[i][2];
- }
- }
- idx=0;
- len = arr.length;
- removeOptions("tissue");
- for (var i=0; i < len; i++) {
- // setting Type's option
- typeObj.options[idx++] = new Option(tArr[arr[i]].txt, tArr[arr[i]].val);
- }
- updateChocie('tissue');
-
- }else if(selectObjId=='tissue')
- {
- var speciesObj = document.getElementById('species');
- var groupObj = document.getElementById('cross');
- var typeObj = document.getElementById('tissue');
- var databaseObj = document.getElementById('database');
-
- var len = lArr.length;
- var arr = [];
- var idx = 0;
- for (var i=1; i < len; i++) {
- //get dataset(database) info from lArr
- if(lArr[i][0]==(getIndexByValue('species',speciesObj.value)).toString()&&lArr[i][1]==(getIndexByValue('cross',groupObj.value)).toString()&&lArr[i][2]==(getIndexByValue('tissue',typeObj.value)).toString()&&!Contains(arr,lArr[i][3]))
- {
- arr[idx++]=lArr[i][3];
- }
- }
- idx=0;
- len = arr.length;
- removeOptions("database");
- for (var i=0; i < len; i++) {
- // setting Database's option
- databaseObj.options[idx++] = new Option(dArr[arr[i]].txt, dArr[arr[i]].val);
- }
- updateChocie('database');
- }
-}
-
-/*
-* input: arr (targeted array); obj (targeted value)
-* function: check whether targeted array contains targeted value or not
-* output: return true, if array contains targeted value, otherwise return false
-*/
-function Contains(arr,obj) {
- var i = arr.length;
- while (i--) {
- if (arr[i] == obj) {
- return true;
- }
- }
- return false;
-}
-
-/*
-* input: selectObj (designated select menu, such as species, cross, etc... )
-* function: clear designated select menu's option
-* output: null
-*/
-function removeOptions(selectObj) {
- if (typeof selectObj != 'object'){
- selectObj = document.getElementById(selectObj);
- }
- var len = selectObj.options.length;
- for (var i=0; i < len; i++) {
- // clear current selection
- selectObj.options[0] = null;
- }
-}
-
-/*
-* input: selectObjId (designated select menu, such as species, cross, etc... )
-* Value: target value
-* function: retrieve Index info of target value in designated array
-* output: index info
-*/
-function getIndexByValue(selectObjId,val)
-{
- if(selectObjId=='species')
- {
- for(var i=1;i=0){
- //setting option's selected status
- Obj.options[idx].selected=true;
- //update the following select menu
- fillOptions(objId);
- }else{
- Obj.options[0].selected=true;
- fillOptions(objId);
- }
-}
-
-// setting option's selected status based on default setting or cookie setting for Species, Group, Type and Database select menu in the main search page http://www.genenetwork.org/
-function updateChocie(selectObjId){
-
- if (selectObjId =='species')
- {
- defaultSpecies= getDefaultValue('species');
- //setting option's selected status
- setChoice('species',defaultSpecies);
- }else if (selectObjId =='cross')
- {
- defaultSet= getDefaultValue('cross');
- //setting option's selected status
- setChoice('cross',defaultSet);
- }else if (selectObjId =='tissue')
- {
- defaultType= getDefaultValue('tissue');
- //setting option's selected status
- setChoice('tissue',defaultType);
- }else if (selectObjId =='database')
- {
- defaultDB= getDefaultValue('database');
- //setting option's selected status
- setChoice('database',defaultDB);
- }
-}
-
-//get default value;if cookie exists, then use cookie value, otherwise use default value
-function getDefaultValue(selectObjId){
- //define default value
- var defaultSpecies = 'mouse'
- var defaultSet = 'BXD'
- var defaultType = 'Hippocampus'
- var defaultDB = 'HC_M2_0606_P'
-
- if (selectObjId =='species')
- {
- //if cookie exists, then use cookie value, otherwise use default value
- var cookieSpecies = getCookie('defaultSpecies');
- if(cookieSpecies)
- {
- defaultSpecies= cookieSpecies;
- }
- return defaultSpecies;
- }else if (selectObjId =='cross'){
- var cookieSet = getCookie('defaultSet');
- if(cookieSet){
- defaultSet= cookieSet;
- }
- return defaultSet;
- }else if (selectObjId =='tissue'){
- var cookieType = getCookie('defaultType');
- if(cookieType){
- defaultType= cookieType;
- }
- return defaultType;
- }else if (selectObjId =='database')
- {
- var cookieDB = getCookie('defaultDB');
- if(cookieDB){
- defaultDB= cookieDB;
- }
- return defaultDB;
- }
-
-}
-
-//setting default value into cookies for the dropdown menus: Species,Group, Type, and Database
-function setDefault(thisform){
-
- setCookie('cookieTest', 'cookieTest', 1);
- var cookieTest = getCookie('cookieTest');
- delCookie('cookieTest');
- if (cookieTest){
- var defaultSpecies = thisform.species.value;
- setCookie('defaultSpecies', defaultSpecies, 10);
- var defaultSet = thisform.cross.value;
- setCookie('defaultSet', defaultSet, 10);
- var defaultType = thisform.tissue.value;
- setCookie('defaultType', defaultType, 10);
- var defaultDB = thisform.database.value;
- setCookie('defaultDB', defaultDB, 10);
- updateChocie('species');
- updateChocie('cross');
- updateChocie('tissue');
- updateChocie('database');
- alert("The current settings are now your default");
- }
- else{
- alert("You need to enable Cookies in your browser.");
- }
-}
-
-'''
-# write all strings' info into selectDatasetMenu.js file
-fileHandler.write(outputStr)
-fileHandler.close()
+ Cursor.execute("""select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from
+ ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue where
+ ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and Tissue.Name = %s
+ and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId =
+ InbredSet.Id and ProbeSetFreeze.public > %s order by
+ ProbeSetFreeze.CreateTime desc""", (type_name,
+ webqtlConfig.PUBLICTHRESH))
+ datasets[species][group][type_name] = Cursor.fetchall()
+
+ return datasets
+
+
+def main():
+ species = get_species()
+ groups = get_groups(species)
+ types = get_types(groups)
+ datasets = get_datasets(types)
+
+ species.append(('All Species', 'All Species'))
+ groups['All Species'] = [('All Groups', 'All Groups')]
+ types['All Species'] = {}
+ types['All Species']['All Groups'] = [('Phenotypes', 'Phenotypes')]
+ datasets['All Species'] = {}
+ datasets['All Species']['All Groups'] = {}
+ datasets['All Species']['All Groups']['Phenotypes'] = [('All Phenotypes','All Phenotypes')]
+
+ data = dict(species=species,
+ groups=groups,
+ types=types,
+ datasets=datasets,
+ )
+
+ output_file = """../wqflask/static/new/javascript/dataset_menu_structure.json"""
+
+ with open(output_file, 'w') as fh:
+ json.dump(data, fh, indent=" ", sort_keys=True)
+
+
+if __name__ == '__main__':
+ main()
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
new file mode 100644
index 00000000..d25d3cf5
--- /dev/null
+++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
@@ -0,0 +1,6792 @@
+{
+ "datasets": {
+ "All Species": {
+ "All Groups": {
+ "Phenotypes": [
+ [
+ "All Phenotypes",
+ "All Phenotypes"
+ ]
+ ]
+ }
+ },
+ "arabidopsis": {
+ "BayXSha": {
+ "Genotypes": [
+ [
+ "BayXShaGeno",
+ "BayXSha Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BayXShaPublish",
+ "BayXSha Published Phenotypes"
+ ]
+ ]
+ },
+ "ColXBur": {
+ "Genotypes": [
+ [
+ "ColXBurGeno",
+ "ColXBur Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "ColXBurPublish",
+ "ColXBur Published Phenotypes"
+ ]
+ ]
+ },
+ "ColXCvi": {
+ "Genotypes": [
+ [
+ "ColXCviGeno",
+ "ColXCvi Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "ColXCviPublish",
+ "ColXCvi Published Phenotypes"
+ ]
+ ]
+ }
+ },
+ "barley": {
+ "QSM": {
+ "Genotypes": [
+ [
+ "QSMGeno",
+ "QSM Genotypes"
+ ]
+ ],
+ "Leaf": [
+ [
+ "B1LI0809R",
+ "Barley1 Leaf INOC TTKS (Aug09) RMA"
+ ],
+ [
+ "B1LI0809M5",
+ "Barley1 Leaf INOC TTKS (Aug09) MAS5"
+ ],
+ [
+ "B1MI0809M5",
+ "Barley1 Leaf MOCK TTKS (Aug09) MAS5"
+ ],
+ [
+ "B1MI0809R",
+ "Barley1 Leaf MOCK TTKS (Aug09) RMA"
+ ],
+ [
+ "B30_K_1206_M",
+ "Barley1 Leaf MAS 5.0 SCRI (Dec06)"
+ ],
+ [
+ "B30_K_1206_R",
+ "Barley1 Leaf gcRMA SCRI (Dec06)"
+ ],
+ [
+ "B30_K_1206_Rn",
+ "Barley1 Leaf gcRMAn SCRI (Dec06)"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "QSMPublish",
+ "QSM Published Phenotypes"
+ ]
+ ]
+ },
+ "SXM": {
+ "Embryo": [
+ [
+ "B139_K_1206_R",
+ "Barley1 Embryo gcRMA SCRI (Dec06)"
+ ],
+ [
+ "B139_K_1206_M",
+ "Barley1 Embryo MAS 5.0 SCRI (Dec06)"
+ ],
+ [
+ "B150_K_0406_R",
+ "Barley1 Embryo0 gcRMA SCRI (Apr06)"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "SXMGeno",
+ "SXM Genotypes"
+ ]
+ ],
+ "Leaf": [
+ [
+ "B1LI0809R",
+ "Barley1 Leaf INOC TTKS (Aug09) RMA"
+ ],
+ [
+ "B1LI0809M5",
+ "Barley1 Leaf INOC TTKS (Aug09) MAS5"
+ ],
+ [
+ "B1MI0809M5",
+ "Barley1 Leaf MOCK TTKS (Aug09) MAS5"
+ ],
+ [
+ "B1MI0809R",
+ "Barley1 Leaf MOCK TTKS (Aug09) RMA"
+ ],
+ [
+ "B30_K_1206_M",
+ "Barley1 Leaf MAS 5.0 SCRI (Dec06)"
+ ],
+ [
+ "B30_K_1206_R",
+ "Barley1 Leaf gcRMA SCRI (Dec06)"
+ ],
+ [
+ "B30_K_1206_Rn",
+ "Barley1 Leaf gcRMAn SCRI (Dec06)"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "SXMPublish",
+ "SXM Published Phenotypes"
+ ]
+ ]
+ }
+ },
+ "drosophila": {
+ "DGRP": {
+ "Genotypes": [
+ [
+ "DGRPGeno",
+ "DGRP Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "DGRPPublish",
+ "DGRP Published Phenotypes"
+ ]
+ ],
+ "Whole Body": [
+ [
+ "NCSU_DrosWB_LC_RMA_0111",
+ "NCSU Drosophila Whole Body (Jan11) RMA"
+ ],
+ [
+ "UAB_DrosWB_LC_RMA_1009",
+ "UAB Whole body D.m. mRNA control (Oct09) RMA"
+ ],
+ [
+ "UAB_DrosWB_LE_RMA_1009",
+ "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA"
+ ]
+ ]
+ },
+ "Oregon-R_x_2b3": {
+ "Genotypes": [
+ [
+ "Oregon-R_x_2b3Geno",
+ "Oregon-R_x_2b3 Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "Oregon-R_x_2b3Publish",
+ "Oregon-R_x_2b3 Published Phenotypes"
+ ]
+ ],
+ "Whole Body": [
+ [
+ "NCSU_DrosWB_LC_RMA_0111",
+ "NCSU Drosophila Whole Body (Jan11) RMA"
+ ],
+ [
+ "UAB_DrosWB_LC_RMA_1009",
+ "UAB Whole body D.m. mRNA control (Oct09) RMA"
+ ],
+ [
+ "UAB_DrosWB_LE_RMA_1009",
+ "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA"
+ ]
+ ]
+ }
+ },
+ "human": {
+ "AD-cases-controls": {
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "AD-cases-controlsGeno",
+ "AD-cases-controls Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "AD-cases-controlsPublish",
+ "AD-cases-controls Published Phenotypes"
+ ]
+ ]
+ },
+ "AD-cases-controls-Myers": {
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "AD-cases-controls-MyersGeno",
+ "AD-cases-controls-Myers Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "AD-cases-controls-MyersPublish",
+ "AD-cases-controls-Myers Published Phenotypes"
+ ]
+ ]
+ },
+ "CANDLE": {
+ "Genotypes": [
+ [
+ "CANDLEGeno",
+ "CANDLE Genotypes"
+ ]
+ ],
+ "Newborn Cord Blood": [
+ [
+ "CANDLE_NB_0711",
+ "CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "CANDLEPublish",
+ "CANDLE Published Phenotypes"
+ ]
+ ]
+ },
+ "CEPH-2004": {
+ "Genotypes": [
+ [
+ "CEPH-2004Geno",
+ "CEPH-2004 Genotypes"
+ ]
+ ],
+ "Lymphoblast B-cell": [
+ [
+ "UT_CEPH_RankInv0909",
+ "UTHSC CEPH B-cells Illumina (Sep09) RankInv"
+ ],
+ [
+ "Human_1008",
+ "Monks CEPH B-cells Agilent (Dec04) Log10Ratio"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "CEPH-2004Publish",
+ "CEPH-2004 Published Phenotypes"
+ ]
+ ]
+ },
+ "HB": {
+ "Cerebellum": [
+ [
+ "HBTRC-MLC_0611",
+ "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLC_N_0611",
+ "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLC_AD_0611",
+ "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLC_HD_0611",
+ "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio"
+ ],
+ [
+ "GCB_M2_0505_M",
+ "GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5"
+ ],
+ [
+ "GCB_M2_0505_R",
+ "GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA"
+ ],
+ [
+ "GCB_M2_0505_P",
+ "GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN"
+ ],
+ [
+ "CB_M_0305_R",
+ "SJUT Cerebellum mRNA M430 (Mar05) RMA"
+ ],
+ [
+ "CB_M_0305_M",
+ "SJUT Cerebellum mRNA M430 (Mar05) MAS5"
+ ],
+ [
+ "CB_M_0305_P",
+ "SJUT Cerebellum mRNA M430 (Mar05) PDNN"
+ ],
+ [
+ "CB_M_1004_R",
+ "SJUT Cerebellum mRNA M430 (Oct04) RMA"
+ ],
+ [
+ "CB_M_1004_M",
+ "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
+ ],
+ [
+ "CB_M_1004_P",
+ "SJUT Cerebellum mRNA M430 (Oct04) PDNN"
+ ],
+ [
+ "CB_M_1003_M",
+ "SJUT Cerebellum mRNA M430 (Oct03) MAS5"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "HBGeno",
+ "HB Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "HBPublish",
+ "HB Published Phenotypes"
+ ]
+ ],
+ "Prefrontal Cortex": [
+ [
+ "HBTRC-MLPFC_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_N_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_AD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_HD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
+ ],
+ [
+ "INIA_MacFas_Pf_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_PfE_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
+ ],
+ [
+ "VCUSal_1006_R",
+ "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
+ ],
+ [
+ "VCUEtOH_1206_R",
+ "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCUSal_1206_R",
+ "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCU_PF_Air_0111_R",
+ "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_Et_0111_R",
+ "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_AvE_0111_Ss",
+ "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
+ ],
+ [
+ "VCUEt_vs_Sal_0806_R",
+ "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
+ ],
+ [
+ "VCUEtOH_0806_R",
+ "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
+ ],
+ [
+ "VCUSal_0806_R",
+ "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
+ ]
+ ],
+ "Primary Visual Cortex": [
+ [
+ "KIN_YSM_V1C_0711",
+ "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "HBTRC-MLVC_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLVC_N_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLVC_AD_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLVC_HD_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio"
+ ]
+ ]
+ },
+ "HLC": {
+ "Genotypes": [
+ [
+ "HLCGeno",
+ "HLC Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "HLCPublish",
+ "HLC Published Phenotypes"
+ ]
+ ]
+ },
+ "HSB": {
+ "Amygdala": [
+ [
+ "KIN_YSM_AMY_0711",
+ "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "INIA_AmgCoh_0311",
+ "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_M_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_F_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
+ ],
+ [
+ "INIA_MacFas_AMGc_RMA_0110",
+ "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_AMGe_RMA_0110",
+ "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
+ ]
+ ],
+ "Caudal Ganglionic Eminence": [
+ [
+ "KIN_YSM_CGE_0711",
+ "KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Cerebellar Cortex": [
+ [
+ "KIN_YSM_CBC_0711",
+ "KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Diencephalon": [
+ [
+ "KIN_YSM_DIE_0711",
+ "KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Dorsal Thalamus": [
+ [
+ "KIN_YSM_DTH_0711",
+ "KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Dorsolateral Prefrontal Cortex": [
+ [
+ "KIN_YSM_DFC_0711",
+ "KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Frontal Cerebral Wall": [
+ [
+ "KIN_YSM_FC_0711",
+ "KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "HSBGeno",
+ "HSB Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Inferior Temporal Cortex": [
+ [
+ "KIN_YSM_ITC_0711",
+ "KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Lateral Ganglionic Eminence": [
+ [
+ "KIN_YSM_LGE_0711",
+ "KIN/YSM Human LGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Medial Ganglionic Eminence": [
+ [
+ "KIN_YSM_MGE_0711",
+ "KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Medial Prefrontal Cortex": [
+ [
+ "KIN_YSM_MFC_0711",
+ "KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Mediodorsal Nucleus of Thalamus": [
+ [
+ "KIN_YSM_MD_0711",
+ "KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Occipital Cerebral Wall": [
+ [
+ "KIN_YSM_OC_0711",
+ "KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Orbital Prefrontal Cortex": [
+ [
+ "KIN_YSM_OFC_0711",
+ "KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Parietal Cerebral Wall": [
+ [
+ "KIN_YSM_PC_0711",
+ "KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "HSBPublish",
+ "HSB Published Phenotypes"
+ ]
+ ],
+ "Posterior Inferior Parietal Cortex": [
+ [
+ "KIN_YSM_IPC_0711",
+ "KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Posterior Superior Temporal Cortex": [
+ [
+ "KIN_YSM_STC_0711",
+ "KIN/YSM Human STC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Primary Auditory (A1) Cortex": [
+ [
+ "KIN_YSM_A1C_0711",
+ "KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Primary Motor (M1) Cortex": [
+ [
+ "KIN_YSM_M1C_0711",
+ "KIN/YSM Human M1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Primary Somatosensory (S1) Cortex": [
+ [
+ "KIN_YSM_S1C_0711",
+ "KIN/YSM Human S1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Primary Visual Cortex": [
+ [
+ "KIN_YSM_V1C_0711",
+ "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "HBTRC-MLVC_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLVC_N_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLVC_AD_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLVC_HD_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio"
+ ]
+ ],
+ "Striatum": [
+ [
+ "DevStriatum_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "KIN_YSM_STR_0711",
+ "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "OHSU_HS-CC_ILMStr_0211",
+ "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
+ ],
+ [
+ "UTHSC_Striatum_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
+ ],
+ [
+ "UTHSC_Str_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
+ ],
+ [
+ "UTHSC_1107_RankInv",
+ "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
+ ],
+ [
+ "SA_M2_0905_P",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
+ ],
+ [
+ "SA_M2_0905_M",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
+ ],
+ [
+ "SA_M2_0905_R",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
+ ],
+ [
+ "SA_M2_0405_MC",
+ "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
+ ],
+ [
+ "SA_M2_0405_RC",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
+ ],
+ [
+ "SA_M2_0405_PC",
+ "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
+ ],
+ [
+ "SA_M2_0405_SS",
+ "HBP Rosen Striatum M430V2 (Apr05) SScore"
+ ],
+ [
+ "SA_M2_0405_RR",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
+ ],
+ [
+ "Striatum_Exon_0209",
+ "HQF Striatum Exon (Feb09) RMA"
+ ],
+ [
+ "DevStriatum_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
+ ]
+ ],
+ "Temporal Cerebral Wall": [
+ [
+ "KIN_YSM_TC_0711",
+ "KIN/YSM Human TC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Upper (Rostral) Rhombic Lip": [
+ [
+ "KIN_YSM_URL_0711",
+ "KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Ventral Forebrain": [
+ [
+ "KIN_YSM_VF_0711",
+ "KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Ventrolateral Prefrontal Cortex": [
+ [
+ "KIN_YSM_VFC_0711",
+ "KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ]
+ }
+ },
+ "macaque monkey": {
+ "Macaca-fasicularis": {
+ "Amygdala": [
+ [
+ "KIN_YSM_AMY_0711",
+ "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "INIA_AmgCoh_0311",
+ "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_M_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_F_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
+ ],
+ [
+ "INIA_MacFas_AMGc_RMA_0110",
+ "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_AMGe_RMA_0110",
+ "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
+ ]
+ ],
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "Macaca-fasicularisGeno",
+ "Macaca-fasicularis Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Nucleus Accumbens": [
+ [
+ "INIA_MacFas_Ac_RMA_0110",
+ "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_Ae_RMA_0110",
+ "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **"
+ ],
+ [
+ "VCUSalo_1007_R",
+ "VCU BXD NA Sal M430 2.0 (Oct07) RMA"
+ ],
+ [
+ "VCUEtOH_1007_R",
+ "VCU BXD NA EtOH M430 2.0 (Oct07) RMA **"
+ ],
+ [
+ "VCUSal_1007_R",
+ "VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "Macaca-fasicularisPublish",
+ "Macaca-fasicularis Published Phenotypes"
+ ]
+ ],
+ "Prefrontal Cortex": [
+ [
+ "HBTRC-MLPFC_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_N_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_AD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_HD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
+ ],
+ [
+ "INIA_MacFas_Pf_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_PfE_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
+ ],
+ [
+ "VCUSal_1006_R",
+ "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
+ ],
+ [
+ "VCUEtOH_1206_R",
+ "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCUSal_1206_R",
+ "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCU_PF_Air_0111_R",
+ "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_Et_0111_R",
+ "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_AvE_0111_Ss",
+ "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
+ ],
+ [
+ "VCUEt_vs_Sal_0806_R",
+ "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
+ ],
+ [
+ "VCUEtOH_0806_R",
+ "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
+ ],
+ [
+ "VCUSal_0806_R",
+ "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
+ ]
+ ]
+ }
+ },
+ "mouse": {
+ "AKXD": {
+ "Genotypes": [
+ [
+ "AKXDGeno",
+ "AKXD Genotypes"
+ ]
+ ],
+ "Mammary Tumors": [
+ [
+ "NCI_Mam_Tum_RMA_0409",
+ "NCI Mammary M430v2 (Apr09) RMA"
+ ],
+ [
+ "NCI_Agil_Mam_Tum_RMA_0409",
+ "NCI Mammary LMT miRNA v2 (Apr09) RMA"
+ ],
+ [
+ "MA_M_0704_R",
+ "NCI Mammary mRNA M430 (July04) RMA"
+ ],
+ [
+ "MA_M_0704_M",
+ "NCI Mammary mRNA M430 (July04) MAS5"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "AKXDPublish",
+ "AKXD Published Phenotypes"
+ ]
+ ]
+ },
+ "AXBXA": {
+ "Eye": [
+ [
+ "Eye_AXBXA_1008_RankInv",
+ "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
+ ],
+ [
+ "Eye_M2_0908_R",
+ "Eye M430v2 (Sep08) RMA"
+ ],
+ [
+ "Eye_M2_0908_R_NB",
+ "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_ND",
+ "Eye M430v2 WT Gpnmb (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_WTWT",
+ "Eye M430v2 WT WT (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_WT",
+ "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_MT",
+ "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
+ ],
+ [
+ "BXD_GLA_0911",
+ "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
+ ],
+ [
+ "UIOWA_Eye_RMA_0906",
+ "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "AXBXAGeno",
+ "AXBXA Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "AXBXAPublish",
+ "AXBXA Published Phenotypes"
+ ]
+ ]
+ },
+ "B6BTBRF2": {
+ "Genotypes": [
+ [
+ "B6BTBRF2Geno",
+ "B6BTBRF2 Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "B6BTBRF2Publish",
+ "B6BTBRF2 Published Phenotypes"
+ ]
+ ]
+ },
+ "B6D2F2": {
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "B6D2F2Geno",
+ "B6D2F2 Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "B6D2F2Publish",
+ "B6D2F2 Published Phenotypes"
+ ]
+ ]
+ },
+ "BDF2-1999": {
+ "Genotypes": [
+ [
+ "BDF2-1999Geno",
+ "BDF2-1999 Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BDF2-1999Publish",
+ "BDF2-1999 Published Phenotypes"
+ ]
+ ]
+ },
+ "BDF2-2005": {
+ "Genotypes": [
+ [
+ "BDF2-2005Geno",
+ "BDF2-2005 Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BDF2-2005Publish",
+ "BDF2-2005 Published Phenotypes"
+ ]
+ ],
+ "Striatum": [
+ [
+ "DevStriatum_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "KIN_YSM_STR_0711",
+ "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "OHSU_HS-CC_ILMStr_0211",
+ "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
+ ],
+ [
+ "UTHSC_Striatum_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
+ ],
+ [
+ "UTHSC_Str_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
+ ],
+ [
+ "UTHSC_1107_RankInv",
+ "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
+ ],
+ [
+ "SA_M2_0905_P",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
+ ],
+ [
+ "SA_M2_0905_M",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
+ ],
+ [
+ "SA_M2_0905_R",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
+ ],
+ [
+ "SA_M2_0405_MC",
+ "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
+ ],
+ [
+ "SA_M2_0405_RC",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
+ ],
+ [
+ "SA_M2_0405_PC",
+ "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
+ ],
+ [
+ "SA_M2_0405_SS",
+ "HBP Rosen Striatum M430V2 (Apr05) SScore"
+ ],
+ [
+ "SA_M2_0405_RR",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
+ ],
+ [
+ "Striatum_Exon_0209",
+ "HQF Striatum Exon (Feb09) RMA"
+ ],
+ [
+ "DevStriatum_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
+ ]
+ ]
+ },
+ "BHF2": {
+ "Adipose": [
+ [
+ "UCLA_BHF2_ADIPOSE_MALE",
+ "UCLA BHF2 Adipose Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
+ "UCLA CTB6B6CTF2 Adipose Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_ADIPOSE_FEMALE",
+ "UCLA BHF2 Adipose Female mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
+ "UCLA CTB6B6CTF2 Adipose Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_MALE",
+ "UCLA BHHBF2 Adipose Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_FEMALE",
+ "UCLA BHHBF2 Adipose Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_2005",
+ "UCLA BHHBF2 Adipose (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_2005",
+ "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_ADIPOSE_0605",
+ "UCLA BHF2 Adipose (June05) mlratio"
+ ]
+ ],
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "BHF2Geno",
+ "BHF2 Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Muscle": [
+ [
+ "EPFLMouseMuscleRMA1211",
+ "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleCDRMA1211",
+ "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleHFDRMA1211",
+ "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
+ "UCLA CTB6B6CTF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_MALE",
+ "UCLA CTB6B6CTF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_FEMALE",
+ "UCLA BHHBF2 Muscle Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_MALE",
+ "UCLA BHHBF2 Muscle Male Only"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_MALE",
+ "UCLA BHF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_FEMALE",
+ "UCLA BHF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_2005",
+ "UCLA BHHBF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_2005",
+ "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_0605",
+ "UCLA BHF2 Muscle (June05) mlratio **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BHF2Publish",
+ "BHF2 Published Phenotypes"
+ ]
+ ]
+ },
+ "BHHBF2": {
+ "Adipose": [
+ [
+ "UCLA_BHF2_ADIPOSE_MALE",
+ "UCLA BHF2 Adipose Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
+ "UCLA CTB6B6CTF2 Adipose Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_ADIPOSE_FEMALE",
+ "UCLA BHF2 Adipose Female mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
+ "UCLA CTB6B6CTF2 Adipose Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_MALE",
+ "UCLA BHHBF2 Adipose Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_FEMALE",
+ "UCLA BHHBF2 Adipose Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_2005",
+ "UCLA BHHBF2 Adipose (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_2005",
+ "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_ADIPOSE_0605",
+ "UCLA BHF2 Adipose (June05) mlratio"
+ ]
+ ],
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "BHHBF2Geno",
+ "BHHBF2 Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Muscle": [
+ [
+ "EPFLMouseMuscleRMA1211",
+ "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleCDRMA1211",
+ "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleHFDRMA1211",
+ "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
+ "UCLA CTB6B6CTF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_MALE",
+ "UCLA CTB6B6CTF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_FEMALE",
+ "UCLA BHHBF2 Muscle Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_MALE",
+ "UCLA BHHBF2 Muscle Male Only"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_MALE",
+ "UCLA BHF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_FEMALE",
+ "UCLA BHF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_2005",
+ "UCLA BHHBF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_2005",
+ "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_0605",
+ "UCLA BHF2 Muscle (June05) mlratio **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BHHBF2Publish",
+ "BHHBF2 Published Phenotypes"
+ ]
+ ]
+ },
+ "BXD": {
+ "Amygdala": [
+ [
+ "KIN_YSM_AMY_0711",
+ "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "INIA_AmgCoh_0311",
+ "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_M_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
+ ],
+ [
+ "INIA_Amg_BLA_RMA_F_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
+ ],
+ [
+ "INIA_MacFas_AMGc_RMA_0110",
+ "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_AMGe_RMA_0110",
+ "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
+ ]
+ ],
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Cartilage": [
+ [
+ "UCLA_BXDBXH_CARTILAGE_V2",
+ "UCLA BXD and BXH Cartilage v2"
+ ],
+ [
+ "UCLA_BXHBXD_CARTILAGE_V2",
+ "UCLA BXH and BXD Cartilage v2"
+ ],
+ [
+ "UCLA_BXDBXH_CARTILAGE",
+ "UCLA BXD and BXH Cartilage"
+ ],
+ [
+ "UCLA_BXHBXD_CARTILAGE",
+ "UCLA BXH and BXD Cartilage"
+ ],
+ [
+ "UCLA_BXD_CARTILAGE",
+ "UCLA BXD Cartilage"
+ ],
+ [
+ "UCLA_BXH_CARTILAGE",
+ "UCLA BXH Cartilage"
+ ]
+ ],
+ "Cerebellum": [
+ [
+ "HBTRC-MLC_0611",
+ "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLC_N_0611",
+ "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLC_AD_0611",
+ "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLC_HD_0611",
+ "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio"
+ ],
+ [
+ "GCB_M2_0505_M",
+ "GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5"
+ ],
+ [
+ "GCB_M2_0505_R",
+ "GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA"
+ ],
+ [
+ "GCB_M2_0505_P",
+ "GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN"
+ ],
+ [
+ "CB_M_0305_R",
+ "SJUT Cerebellum mRNA M430 (Mar05) RMA"
+ ],
+ [
+ "CB_M_0305_M",
+ "SJUT Cerebellum mRNA M430 (Mar05) MAS5"
+ ],
+ [
+ "CB_M_0305_P",
+ "SJUT Cerebellum mRNA M430 (Mar05) PDNN"
+ ],
+ [
+ "CB_M_1004_R",
+ "SJUT Cerebellum mRNA M430 (Oct04) RMA"
+ ],
+ [
+ "CB_M_1004_M",
+ "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
+ ],
+ [
+ "CB_M_1004_P",
+ "SJUT Cerebellum mRNA M430 (Oct04) PDNN"
+ ],
+ [
+ "CB_M_1003_M",
+ "SJUT Cerebellum mRNA M430 (Oct03) MAS5"
+ ]
+ ],
+ "Eye": [
+ [
+ "Eye_AXBXA_1008_RankInv",
+ "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
+ ],
+ [
+ "Eye_M2_0908_R",
+ "Eye M430v2 (Sep08) RMA"
+ ],
+ [
+ "Eye_M2_0908_R_NB",
+ "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_ND",
+ "Eye M430v2 WT Gpnmb (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_WTWT",
+ "Eye M430v2 WT WT (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_WT",
+ "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_MT",
+ "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
+ ],
+ [
+ "BXD_GLA_0911",
+ "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
+ ],
+ [
+ "UIOWA_Eye_RMA_0906",
+ "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "BXDGeno",
+ "BXD Genotypes"
+ ]
+ ],
+ "Hematopoietic Cells": [
+ [
+ "UMCG_0907_HemaStem_ori",
+ "UMCG Stem Cells ILM6v1.1 (Apr09) original"
+ ],
+ [
+ "UMCG_0907_HemaStem",
+ "UMCG Stem Cells ILM6v1.1 (Apr09) transformed"
+ ],
+ [
+ "UMCG_0907_Pro_ori",
+ "UMCG Progenitor Cells ILM6v1.1 (Apr09) original"
+ ],
+ [
+ "UMCG_0907_Pro",
+ "UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed"
+ ],
+ [
+ "UMCG_0907_Eryth_ori",
+ "UMCG Erythroid Cells ILM6v1.1 (Apr09) original"
+ ],
+ [
+ "UMCG_0907_Eryth",
+ "UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed"
+ ],
+ [
+ "UMCG_0907_Myeloid_ori",
+ "UMCG Myeloid Cells ILM6v1.1 (Apr09) original"
+ ],
+ [
+ "UMCG_0907_Myeloid",
+ "UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed"
+ ],
+ [
+ "HC_U_0304_R",
+ "GNF Stem Cells U74Av2 (Mar04) RMA"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Hypothalamus": [
+ [
+ "INIA_Hyp_RMA_1110",
+ "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)"
+ ],
+ [
+ "INIA_Hyp_M_RMA_1110",
+ "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male"
+ ],
+ [
+ "INIA_Hyp_F_RMA_1110",
+ "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female"
+ ]
+ ],
+ "Kidney": [
+ [
+ "MA_M2F_0706_R",
+ "Mouse kidney M430v2 Female (Aug06) RMA"
+ ],
+ [
+ "MA_M2M_0706_R",
+ "Mouse kidney M430v2 Male (Aug06) RMA"
+ ],
+ [
+ "MA_M2_0806_R",
+ "Mouse kidney M430v2 Sex Balanced (Aug06) RMA"
+ ],
+ [
+ "MA_M2_0806_P",
+ "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN"
+ ],
+ [
+ "MA_M2_0706_P",
+ "Mouse Kidney M430v2 (Jul06) PDNN"
+ ],
+ [
+ "MA_M2_0706_R",
+ "Mouse Kidney M430v2 (Jul06) RMA"
+ ],
+ [
+ "KI_2A_0405_M",
+ "MDC/CAS/ICL Kidney 230A (Apr05) MAS5"
+ ],
+ [
+ "KI_2A_0405_Rz",
+ "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8"
+ ],
+ [
+ "KI_2A_0405_R",
+ "MDC/CAS/ICL Kidney 230A (Apr05) RMA"
+ ]
+ ],
+ "Leucocytes": [
+ [
+ "Illum_BXD_PBL_1108",
+ "UWA Illumina PBL (Nov08) RSN **"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Lung": [
+ [
+ "OXUKHS_ILMLung_RI0510",
+ "OX UK HS ILM6v1.1 Lung (May 2010) RankInv"
+ ],
+ [
+ "HZI_0408_R",
+ "HZI Lung M430v2 (Apr08) RMA"
+ ],
+ [
+ "HZI_0408_M",
+ "HZI Lung M430v2 (Apr08) MAS5"
+ ]
+ ],
+ "Midbrain": [
+ [
+ "VUBXDMouseMidBrainQ0212",
+ "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (Feb12) Quantile"
+ ]
+ ],
+ "Muscle": [
+ [
+ "EPFLMouseMuscleRMA1211",
+ "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleCDRMA1211",
+ "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleHFDRMA1211",
+ "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
+ "UCLA CTB6B6CTF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_MALE",
+ "UCLA CTB6B6CTF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_FEMALE",
+ "UCLA BHHBF2 Muscle Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_MALE",
+ "UCLA BHHBF2 Muscle Male Only"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_MALE",
+ "UCLA BHF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_FEMALE",
+ "UCLA BHF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_2005",
+ "UCLA BHHBF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_2005",
+ "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_0605",
+ "UCLA BHF2 Muscle (June05) mlratio **"
+ ]
+ ],
+ "Neocortex": [
+ [
+ "DevNeocortex_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "DevNeocortex_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "HQFNeoc_1210v2_RankInv",
+ "HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv"
+ ],
+ [
+ "HQFNeoc_1210_RankInv",
+ "HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv"
+ ],
+ [
+ "HQFNeoc_0208_RankInv",
+ "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv"
+ ],
+ [
+ "DevNeocortex_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv **"
+ ],
+ [
+ "DevNeocortex_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv **"
+ ]
+ ],
+ "Nucleus Accumbens": [
+ [
+ "INIA_MacFas_Ac_RMA_0110",
+ "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_Ae_RMA_0110",
+ "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **"
+ ],
+ [
+ "VCUSalo_1007_R",
+ "VCU BXD NA Sal M430 2.0 (Oct07) RMA"
+ ],
+ [
+ "VCUEtOH_1007_R",
+ "VCU BXD NA EtOH M430 2.0 (Oct07) RMA **"
+ ],
+ [
+ "VCUSal_1007_R",
+ "VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BXDPublish",
+ "BXD Published Phenotypes"
+ ]
+ ],
+ "Prefrontal Cortex": [
+ [
+ "HBTRC-MLPFC_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_N_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_AD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_HD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
+ ],
+ [
+ "INIA_MacFas_Pf_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_PfE_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
+ ],
+ [
+ "VCUSal_1006_R",
+ "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
+ ],
+ [
+ "VCUEtOH_1206_R",
+ "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCUSal_1206_R",
+ "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCU_PF_Air_0111_R",
+ "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_Et_0111_R",
+ "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_AvE_0111_Ss",
+ "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
+ ],
+ [
+ "VCUEt_vs_Sal_0806_R",
+ "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
+ ],
+ [
+ "VCUEtOH_0806_R",
+ "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
+ ],
+ [
+ "VCUSal_0806_R",
+ "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
+ ]
+ ],
+ "Retina": [
+ [
+ "Illum_Retina_BXD_RankInv0410",
+ "HEI Retina Illumina V6.2 (April 2010) RankInv"
+ ],
+ [
+ "B6D2ONCILM_0412",
+ "B6D2 ONC Illumina v6.1 (Apr12) RankInv **"
+ ],
+ [
+ "ONCRetILM6_0412",
+ "ONC Retina Illumina V6.2 (Apr12) RankInv **"
+ ],
+ [
+ "G2HEIONCRetILM6_0911",
+ "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
+ ],
+ [
+ "HEIONCRetILM6_0911",
+ "HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
+ ],
+ [
+ "HEIONCvsCRetILM6_0911",
+ "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **"
+ ],
+ [
+ "ILM_Retina_BXD_F_RankInv1210",
+ "HEI Retina Females Illumina V6.2 (Dec10) RankInv **"
+ ],
+ [
+ "ILM_Retina_BXD_M_RankInv1210",
+ "HEI Retina Males Illumina V6.2 (Dec10) RankInv **"
+ ],
+ [
+ "ILM_Retina_BXD_FM_RankInv1210",
+ "HEI Retina F-M Illumina V6.2 (Dec10) RankInv **"
+ ],
+ [
+ "G2NEI_ILM_Retina_BXD_RI0410",
+ "G2NEI Retina Illumina V6.2 (April 2010) RankInv **"
+ ]
+ ],
+ "Spleen": [
+ [
+ "UTHSC_SPL_RMA_1210",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
+ ],
+ [
+ "UTHSC_SPL_RMA_1010",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA"
+ ],
+ [
+ "IoP_SPL_RMA_0509",
+ "IoP Affy MOE 430v2 Spleen (May09) RMA"
+ ],
+ [
+ "Illum_BXD_Spl_1108",
+ "UWA Illumina Spleen (Nov08) RSN **"
+ ],
+ [
+ "UTK_BXDSpl_VST_0110",
+ "UTK Spleen ILM6.1 (Jan10) VST"
+ ],
+ [
+ "STSPL_1107_R",
+ "Stuart Spleen M430v2 (Nov07) RMA"
+ ]
+ ],
+ "Striatum": [
+ [
+ "DevStriatum_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "KIN_YSM_STR_0711",
+ "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "OHSU_HS-CC_ILMStr_0211",
+ "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
+ ],
+ [
+ "UTHSC_Striatum_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
+ ],
+ [
+ "UTHSC_Str_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
+ ],
+ [
+ "UTHSC_1107_RankInv",
+ "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
+ ],
+ [
+ "SA_M2_0905_P",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
+ ],
+ [
+ "SA_M2_0905_M",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
+ ],
+ [
+ "SA_M2_0905_R",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
+ ],
+ [
+ "SA_M2_0405_MC",
+ "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
+ ],
+ [
+ "SA_M2_0405_RC",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
+ ],
+ [
+ "SA_M2_0405_PC",
+ "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
+ ],
+ [
+ "SA_M2_0405_SS",
+ "HBP Rosen Striatum M430V2 (Apr05) SScore"
+ ],
+ [
+ "SA_M2_0405_RR",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
+ ],
+ [
+ "Striatum_Exon_0209",
+ "HQF Striatum Exon (Feb09) RMA"
+ ],
+ [
+ "DevStriatum_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
+ ]
+ ],
+ "T Cell (helper)": [
+ [
+ "RTHC_0211_R",
+ "HZI Thelp M430v2 (Feb11) RMA"
+ ]
+ ],
+ "T Cell (regulatory)": [
+ [
+ "RTC_1106_R",
+ "HZI Treg M430v2 (Feb11) RMA"
+ ]
+ ],
+ "Thymus": [
+ [
+ "Illum_BXD_Thy_1108",
+ "UWA Illumina Thymus (Nov08) RSN **"
+ ]
+ ],
+ "Ventral Tegmental Area": [
+ [
+ "VCUEtvsSal_0609_R",
+ "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **"
+ ],
+ [
+ "VCUEtOH_0609_R",
+ "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **"
+ ],
+ [
+ "VCUSal_0609_R",
+ "VCU BXD VTA Sal M430 2.0 (Jun09) RMA **"
+ ]
+ ]
+ },
+ "BXH": {
+ "Cartilage": [
+ [
+ "UCLA_BXDBXH_CARTILAGE_V2",
+ "UCLA BXD and BXH Cartilage v2"
+ ],
+ [
+ "UCLA_BXHBXD_CARTILAGE_V2",
+ "UCLA BXH and BXD Cartilage v2"
+ ],
+ [
+ "UCLA_BXDBXH_CARTILAGE",
+ "UCLA BXD and BXH Cartilage"
+ ],
+ [
+ "UCLA_BXHBXD_CARTILAGE",
+ "UCLA BXH and BXD Cartilage"
+ ],
+ [
+ "UCLA_BXD_CARTILAGE",
+ "UCLA BXD Cartilage"
+ ],
+ [
+ "UCLA_BXH_CARTILAGE",
+ "UCLA BXH Cartilage"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "BXHGeno",
+ "BXH Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BXHPublish",
+ "BXH Published Phenotypes"
+ ]
+ ]
+ },
+ "CTB6F2": {
+ "Adipose": [
+ [
+ "UCLA_BHF2_ADIPOSE_MALE",
+ "UCLA BHF2 Adipose Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
+ "UCLA CTB6B6CTF2 Adipose Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_ADIPOSE_FEMALE",
+ "UCLA BHF2 Adipose Female mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
+ "UCLA CTB6B6CTF2 Adipose Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_MALE",
+ "UCLA BHHBF2 Adipose Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_FEMALE",
+ "UCLA BHHBF2 Adipose Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_ADIPOSE_2005",
+ "UCLA BHHBF2 Adipose (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_ADIPOSE_2005",
+ "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_ADIPOSE_0605",
+ "UCLA BHF2 Adipose (June05) mlratio"
+ ]
+ ],
+ "Brain": [
+ [
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA_N_0709",
+ "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_F_RMA_Alzh_0709",
+ "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
+ ],
+ [
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ ],
+ [
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ],
+ [
+ "GSE5281_F_RMA0709",
+ "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ ],
+ [
+ "GSE5281_RMA0709",
+ "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
+ ],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ],
+ [
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ ],
+ [
+ "IBR_M_0606_R",
+ "INIA Brain mRNA M430 (Jun06) RMA"
+ ],
+ [
+ "IBR_M_0106_P",
+ "INIA Brain mRNA M430 (Jan06) PDNN"
+ ],
+ [
+ "IBR_M_0106_R",
+ "INIA Brain mRNA M430 (Jan06) RMA"
+ ],
+ [
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
+ ],
+ [
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
+ ],
+ [
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ ],
+ [
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
+ ],
+ [
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ ],
+ [
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "CTB6F2Geno",
+ "CTB6F2 Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Muscle": [
+ [
+ "EPFLMouseMuscleRMA1211",
+ "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleCDRMA1211",
+ "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleHFDRMA1211",
+ "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
+ "UCLA CTB6B6CTF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_MALE",
+ "UCLA CTB6B6CTF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_FEMALE",
+ "UCLA BHHBF2 Muscle Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_MALE",
+ "UCLA BHHBF2 Muscle Male Only"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_MALE",
+ "UCLA BHF2 Muscle Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_FEMALE",
+ "UCLA BHF2 Muscle Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_MUSCLE_2005",
+ "UCLA BHHBF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_MUSCLE_2005",
+ "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_MUSCLE_0605",
+ "UCLA BHF2 Muscle (June05) mlratio **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "CTB6F2Publish",
+ "CTB6F2 Published Phenotypes"
+ ]
+ ]
+ },
+ "CXB": {
+ "Genotypes": [
+ [
+ "CXBGeno",
+ "CXB Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "CXBPublish",
+ "CXB Published Phenotypes"
+ ]
+ ],
+ "Spleen": [
+ [
+ "UTHSC_SPL_RMA_1210",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
+ ],
+ [
+ "UTHSC_SPL_RMA_1010",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA"
+ ],
+ [
+ "IoP_SPL_RMA_0509",
+ "IoP Affy MOE 430v2 Spleen (May09) RMA"
+ ],
+ [
+ "Illum_BXD_Spl_1108",
+ "UWA Illumina Spleen (Nov08) RSN **"
+ ],
+ [
+ "UTK_BXDSpl_VST_0110",
+ "UTK Spleen ILM6.1 (Jan10) VST"
+ ],
+ [
+ "STSPL_1107_R",
+ "Stuart Spleen M430v2 (Nov07) RMA"
+ ]
+ ]
+ },
+ "HS": {
+ "Genotypes": [
+ [
+ "HSGeno",
+ "HS Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Lung": [
+ [
+ "OXUKHS_ILMLung_RI0510",
+ "OX UK HS ILM6v1.1 Lung (May 2010) RankInv"
+ ],
+ [
+ "HZI_0408_R",
+ "HZI Lung M430v2 (Apr08) RMA"
+ ],
+ [
+ "HZI_0408_M",
+ "HZI Lung M430v2 (Apr08) MAS5"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "HSPublish",
+ "HS Published Phenotypes"
+ ]
+ ]
+ },
+ "HS-CC": {
+ "Genotypes": [
+ [
+ "HS-CCGeno",
+ "HS-CC Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "HS-CCPublish",
+ "HS-CC Published Phenotypes"
+ ]
+ ],
+ "Striatum": [
+ [
+ "DevStriatum_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "KIN_YSM_STR_0711",
+ "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "OHSU_HS-CC_ILMStr_0211",
+ "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
+ ],
+ [
+ "UTHSC_Striatum_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
+ ],
+ [
+ "UTHSC_Str_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
+ ],
+ [
+ "UTHSC_1107_RankInv",
+ "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
+ ],
+ [
+ "SA_M2_0905_P",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
+ ],
+ [
+ "SA_M2_0905_M",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
+ ],
+ [
+ "SA_M2_0905_R",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
+ ],
+ [
+ "SA_M2_0405_MC",
+ "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
+ ],
+ [
+ "SA_M2_0405_RC",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
+ ],
+ [
+ "SA_M2_0405_PC",
+ "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
+ ],
+ [
+ "SA_M2_0405_SS",
+ "HBP Rosen Striatum M430V2 (Apr05) SScore"
+ ],
+ [
+ "SA_M2_0405_RR",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
+ ],
+ [
+ "Striatum_Exon_0209",
+ "HQF Striatum Exon (Feb09) RMA"
+ ],
+ [
+ "DevStriatum_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
+ ]
+ ]
+ },
+ "LXS": {
+ "Genotypes": [
+ [
+ "LXSGeno",
+ "LXS Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "LXSPublish",
+ "LXS Published Phenotypes"
+ ]
+ ],
+ "Prefrontal Cortex": [
+ [
+ "HBTRC-MLPFC_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_N_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_AD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
+ ],
+ [
+ "HBTRC-MLPFC_HD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
+ ],
+ [
+ "INIA_MacFas_Pf_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_PfE_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
+ ],
+ [
+ "VCUSal_1006_R",
+ "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
+ ],
+ [
+ "VCUEtOH_1206_R",
+ "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCUSal_1206_R",
+ "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
+ ],
+ [
+ "VCU_PF_Air_0111_R",
+ "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_Et_0111_R",
+ "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
+ ],
+ [
+ "VCU_PF_AvE_0111_Ss",
+ "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
+ ],
+ [
+ "VCUEt_vs_Sal_0806_R",
+ "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
+ ],
+ [
+ "VCUEtOH_0806_R",
+ "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
+ ],
+ [
+ "VCUSal_0806_R",
+ "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
+ ]
+ ]
+ },
+ "MDP": {
+ "Genotypes": [
+ [
+ "MDPGeno",
+ "MDP Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "MDPPublish",
+ "Mouse Phenome Database"
+ ]
+ ]
+ },
+ "NZBXFVB-N2": {
+ "Genotypes": [
+ [
+ "NZBXFVB-N2Geno",
+ "NZBXFVB-N2 Genotypes"
+ ]
+ ],
+ "Mammary Tumors": [
+ [
+ "NCI_Mam_Tum_RMA_0409",
+ "NCI Mammary M430v2 (Apr09) RMA"
+ ],
+ [
+ "NCI_Agil_Mam_Tum_RMA_0409",
+ "NCI Mammary LMT miRNA v2 (Apr09) RMA"
+ ],
+ [
+ "MA_M_0704_R",
+ "NCI Mammary mRNA M430 (July04) RMA"
+ ],
+ [
+ "MA_M_0704_M",
+ "NCI Mammary mRNA M430 (July04) MAS5"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "NZBXFVB-N2Publish",
+ "NZBXFVB-N2 Published Phenotypes"
+ ]
+ ]
+ }
+ },
+ "rat": {
+ "HXBBXH": {
+ "Adrenal Gland": [
+ [
+ "HXB_Adrenal_1208",
+ "MDC/CAS/UCL Adrenal 230A (Dec08) RMA"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "HXBBXHGeno",
+ "HXBBXH Genotypes"
+ ]
+ ],
+ "Heart": [
+ [
+ "HXB_Heart_1208",
+ "MDC/CAS/UCL Heart 230_V2 (Dec08) RMA"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ ],
+ [
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ ],
+ [
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ ],
+ [
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ],
+ [
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ],
+ [
+ "Illum_LXS_Hipp_loess0807",
+ "Hippocampus Illumina (Aug07) LOESS"
+ ],
+ [
+ "Illum_LXS_Hipp_loess_nb0807",
+ "Hippocampus Illumina (Aug07) LOESS_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_quant0807",
+ "Hippocampus Illumina (Aug07) QUANT"
+ ],
+ [
+ "Illum_LXS_Hipp_quant_nb0807",
+ "Hippocampus Illumina (Aug07) QUANT_NB"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn0807",
+ "Hippocampus Illumina (Aug07) RSN"
+ ],
+ [
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
+ ],
+ [
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
+ ],
+ [
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ],
+ [
+ "HC_M2_0606_M",
+ "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ ],
+ [
+ "HC_M2_0606_R",
+ "Hippocampus Consortium M430v2 (Jun06) RMA"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ ],
+ [
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NON_0909",
+ "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOS_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_NOE_0909",
+ "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSS_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ ],
+ [
+ "UT_ILM_BXD_hipp_RSE_0909",
+ "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "Illum_LXS_Hipp_RSE_1008",
+ "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NOE_1008",
+ "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_RSS_1008",
+ "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
+ ]
+ ],
+ "Kidney": [
+ [
+ "MA_M2F_0706_R",
+ "Mouse kidney M430v2 Female (Aug06) RMA"
+ ],
+ [
+ "MA_M2M_0706_R",
+ "Mouse kidney M430v2 Male (Aug06) RMA"
+ ],
+ [
+ "MA_M2_0806_R",
+ "Mouse kidney M430v2 Sex Balanced (Aug06) RMA"
+ ],
+ [
+ "MA_M2_0806_P",
+ "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN"
+ ],
+ [
+ "MA_M2_0706_P",
+ "Mouse Kidney M430v2 (Jul06) PDNN"
+ ],
+ [
+ "MA_M2_0706_R",
+ "Mouse Kidney M430v2 (Jul06) RMA"
+ ],
+ [
+ "KI_2A_0405_M",
+ "MDC/CAS/ICL Kidney 230A (Apr05) MAS5"
+ ],
+ [
+ "KI_2A_0405_Rz",
+ "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8"
+ ],
+ [
+ "KI_2A_0405_R",
+ "MDC/CAS/ICL Kidney 230A (Apr05) RMA"
+ ]
+ ],
+ "Liver": [
+ [
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
+ "JAX_CSB_L_0711",
+ "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_HF_0711",
+ "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "JAX_CSB_L_6C_0711",
+ "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
+ ],
+ [
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ],
+ [
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
+ ],
+ [
+ "LV_G_0106_F",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
+ ],
+ [
+ "LV_G_0106_M",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ ],
+ [
+ "LV_G_0106_B",
+ "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ],
+ [
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ],
+ [
+ "HXB_Liver_1208",
+ "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_MALE",
+ "UCLA BHHBF2 Liver Male Only"
+ ],
+ [
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
+ ],
+ [
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ ],
+ [
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ],
+ [
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ ],
+ [
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Peritoneal Fat": [
+ [
+ "FT_2A_0805_M",
+ "MDC/CAS/ICL Peritoneal Fat 230A (Aug05) MAS5"
+ ],
+ [
+ "FT_2A_0605_Rz",
+ "MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "HXBBXHPublish",
+ "HXBBXH Published Phenotypes"
+ ]
+ ]
+ },
+ "SRxSHRSPF2": {
+ "Eye": [
+ [
+ "Eye_AXBXA_1008_RankInv",
+ "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
+ ],
+ [
+ "Eye_M2_0908_R",
+ "Eye M430v2 (Sep08) RMA"
+ ],
+ [
+ "Eye_M2_0908_R_NB",
+ "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_ND",
+ "Eye M430v2 WT Gpnmb (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_WTWT",
+ "Eye M430v2 WT WT (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_WT",
+ "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
+ ],
+ [
+ "Eye_M2_0908_R_MT",
+ "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
+ ],
+ [
+ "BXD_GLA_0911",
+ "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
+ ],
+ [
+ "UIOWA_Eye_RMA_0906",
+ "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "SRxSHRSPF2Geno",
+ "SRxSHRSPF2 Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "SRxSHRSPF2Publish",
+ "SRxSHRSPF2 Published Phenotypes"
+ ]
+ ]
+ }
+ },
+ "soybean": {
+ "J12XJ58F2": {
+ "Genotypes": [
+ [
+ "J12XJ58F2Geno",
+ "J12XJ58F2 Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "J12XJ58F2Publish",
+ "J12XJ58F2 Published Phenotypes"
+ ]
+ ]
+ }
+ },
+ "tomato": {
+ "LXP": {
+ "Genotypes": [
+ [
+ "LXPGeno",
+ "LXP Genotypes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "LXPPublish",
+ "LXP Published Phenotypes"
+ ]
+ ]
+ }
+ }
+ },
+ "groups": {
+ "All Species": [
+ [
+ "All Groups",
+ "All Groups"
+ ]
+ ],
+ "arabidopsis": [
+ [
+ "BayXSha",
+ "BayXSha"
+ ],
+ [
+ "ColXBur",
+ "ColXBur"
+ ],
+ [
+ "ColXCvi",
+ "ColXCvi"
+ ]
+ ],
+ "barley": [
+ [
+ "QSM",
+ "QSM"
+ ],
+ [
+ "SXM",
+ "SXM"
+ ]
+ ],
+ "drosophila": [
+ [
+ "DGRP",
+ "Drosophila Genetic Reference Panel"
+ ],
+ [
+ "Oregon-R_x_2b3",
+ "Oregon-R x 2b3"
+ ]
+ ],
+ "human": [
+ [
+ "AD-cases-controls",
+ "AD Cases & Controls (Liang)"
+ ],
+ [
+ "AD-cases-controls-Myers",
+ "AD Cases & Controls (Myers)"
+ ],
+ [
+ "CANDLE",
+ "CANDLE"
+ ],
+ [
+ "CEPH-2004",
+ "CEPH Families"
+ ],
+ [
+ "HB",
+ "Harvard Brain Tissue Resource Center"
+ ],
+ [
+ "HLC",
+ "Human Liver Cohort"
+ ],
+ [
+ "HSB",
+ "KIN/YSM"
+ ]
+ ],
+ "macaque monkey": [
+ [
+ "Macaca-fasicularis",
+ "Macaca fasicularis (Cynomolgus monkey)"
+ ]
+ ],
+ "mouse": [
+ [
+ "AKXD",
+ "AKXD"
+ ],
+ [
+ "AXBXA",
+ "AXB/BXA"
+ ],
+ [
+ "B6BTBRF2",
+ "B6BTBRF2"
+ ],
+ [
+ "B6D2F2",
+ "B6D2F2"
+ ],
+ [
+ "BDF2-1999",
+ "BDF2 UCLA"
+ ],
+ [
+ "BDF2-2005",
+ "BDF2-2005"
+ ],
+ [
+ "BHF2",
+ "BHF2 (Apoe Null) UCLA"
+ ],
+ [
+ "BHHBF2",
+ "BH/HB F2 UCLA"
+ ],
+ [
+ "BXD",
+ "BXD"
+ ],
+ [
+ "BXH",
+ "BXH"
+ ],
+ [
+ "CTB6F2",
+ "CastB6/B6Cast F2 UCLA"
+ ],
+ [
+ "CXB",
+ "CXB"
+ ],
+ [
+ "HS",
+ "Heterogeneous Stock"
+ ],
+ [
+ "HS-CC",
+ "Heterogeneous Stock Collaborative Cross"
+ ],
+ [
+ "LXS",
+ "LXS"
+ ],
+ [
+ "MDP",
+ "Mouse Diversity Panel"
+ ],
+ [
+ "NZBXFVB-N2",
+ "NZB/FVB N2 NCI"
+ ]
+ ],
+ "rat": [
+ [
+ "HXBBXH",
+ "HXB/BXH"
+ ],
+ [
+ "SRxSHRSPF2",
+ "UIOWA SRxSHRSP F2"
+ ]
+ ],
+ "soybean": [
+ [
+ "J12XJ58F2",
+ "J12XJ58F2"
+ ]
+ ],
+ "tomato": [
+ [
+ "LXP",
+ "LXP"
+ ]
+ ]
+ },
+ "species": [
+ [
+ "human",
+ "Human"
+ ],
+ [
+ "macaque monkey",
+ "Macaque monkey"
+ ],
+ [
+ "mouse",
+ "Mouse"
+ ],
+ [
+ "rat",
+ "Rat"
+ ],
+ [
+ "drosophila",
+ "Drosophila"
+ ],
+ [
+ "arabidopsis",
+ "Arabidopsis thaliana"
+ ],
+ [
+ "barley",
+ "Barley"
+ ],
+ [
+ "soybean",
+ "Soybean"
+ ],
+ [
+ "tomato",
+ "Tomato"
+ ],
+ [
+ "All Species",
+ "All Species"
+ ]
+ ],
+ "types": {
+ "All Species": {
+ "All Groups": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ]
+ ]
+ },
+ "arabidopsis": {
+ "BayXSha": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ]
+ ],
+ "ColXBur": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ]
+ ],
+ "ColXCvi": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ]
+ ]
+ },
+ "barley": {
+ "QSM": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Leaf",
+ "Leaf mRNA"
+ ]
+ ],
+ "SXM": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Embryo",
+ "Embryo mRNA"
+ ],
+ [
+ "Leaf",
+ "Leaf mRNA"
+ ]
+ ]
+ },
+ "drosophila": {
+ "DGRP": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Whole Body",
+ "Whole Body mRNA"
+ ]
+ ],
+ "Oregon-R_x_2b3": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Whole Body",
+ "Whole Body mRNA"
+ ]
+ ]
+ },
+ "human": {
+ "AD-cases-controls": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ]
+ ],
+ "AD-cases-controls-Myers": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ]
+ ],
+ "CANDLE": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Newborn Cord Blood",
+ "Newborn Cord Blood mRNA"
+ ]
+ ],
+ "CEPH-2004": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Lymphoblast B-cell",
+ "Lymphoblast B-cell mRNA"
+ ]
+ ],
+ "HB": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Cerebellum",
+ "Cerebellum mRNA"
+ ],
+ [
+ "Prefrontal Cortex",
+ "Prefrontal Cortex mRNA"
+ ],
+ [
+ "Primary Visual Cortex",
+ "Primary Visual Cortex mRNA"
+ ]
+ ],
+ "HLC": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ]
+ ],
+ "HSB": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Amygdala",
+ "Amygdala mRNA"
+ ],
+ [
+ "Caudal Ganglionic Eminence",
+ "Caudal Ganglionic Eminence mRNA"
+ ],
+ [
+ "Cerebellar Cortex",
+ "Cerebellar Cortex mRNA"
+ ],
+ [
+ "Diencephalon",
+ "Diencephalon mRNA"
+ ],
+ [
+ "Dorsal Thalamus",
+ "Dorsal Thalamus mRNA"
+ ],
+ [
+ "Dorsolateral Prefrontal Cortex",
+ "Dorsolateral Prefrontal Cortex mRNA"
+ ],
+ [
+ "Frontal Cerebral Wall",
+ "Frontal Cerebral Wall mRNA"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Inferior Temporal Cortex",
+ "Inferior Temporal Cortex mRNA"
+ ],
+ [
+ "Lateral Ganglionic Eminence",
+ "Lateral Ganglionic Eminence mRNA"
+ ],
+ [
+ "Medial Ganglionic Eminence",
+ "Medial Ganglionic Eminence mRNA"
+ ],
+ [
+ "Medial Prefrontal Cortex",
+ "Medial Prefrontal Cortex mRNA"
+ ],
+ [
+ "Mediodorsal Nucleus of Thalamus",
+ "Mediodorsal Nucleus of Thalamus mRNA"
+ ],
+ [
+ "Occipital Cerebral Wall",
+ "Occipital Cerebral Wall mRNA"
+ ],
+ [
+ "Orbital Prefrontal Cortex",
+ "Orbital Prefrontal Cortex mRNA"
+ ],
+ [
+ "Parietal Cerebral Wall",
+ "Parietal Cerebral Wall mRNA"
+ ],
+ [
+ "Posterior Inferior Parietal Cortex",
+ "Posterior Inferior Parietal Cortex mRNA"
+ ],
+ [
+ "Posterior Superior Temporal Cortex",
+ "Posterior Superior Temporal Cortex mRNA"
+ ],
+ [
+ "Primary Auditory (A1) Cortex",
+ "Primary Auditory (A1) Cortex mRNA"
+ ],
+ [
+ "Primary Motor (M1) Cortex",
+ "Primary Motor (M1) Cortex mRNA"
+ ],
+ [
+ "Primary Somatosensory (S1) Cortex",
+ "Primary Somatosensory (S1) Cortex mRNA"
+ ],
+ [
+ "Primary Visual Cortex",
+ "Primary Visual Cortex mRNA"
+ ],
+ [
+ "Striatum",
+ "Striatum mRNA"
+ ],
+ [
+ "Temporal Cerebral Wall",
+ "Temporal Cerebral Wall mRNA"
+ ],
+ [
+ "Upper (Rostral) Rhombic Lip",
+ "Upper (Rostral) Rhombic Lip mRNA"
+ ],
+ [
+ "Ventral Forebrain",
+ "Ventral Forebrain mRNA"
+ ],
+ [
+ "Ventrolateral Prefrontal Cortex",
+ "Ventrolateral Prefrontal Cortex mRNA"
+ ]
+ ]
+ },
+ "macaque monkey": {
+ "Macaca-fasicularis": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Amygdala",
+ "Amygdala mRNA"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Nucleus Accumbens",
+ "Nucleus Accumbens mRNA"
+ ],
+ [
+ "Prefrontal Cortex",
+ "Prefrontal Cortex mRNA"
+ ]
+ ]
+ },
+ "mouse": {
+ "AKXD": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Mammary Tumors",
+ "Mammary Tumors mRNA"
+ ]
+ ],
+ "AXBXA": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Eye",
+ "Eye mRNA"
+ ]
+ ],
+ "B6BTBRF2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ]
+ ],
+ "B6D2F2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ]
+ ],
+ "BDF2-1999": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ]
+ ],
+ "BDF2-2005": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Striatum",
+ "Striatum mRNA"
+ ]
+ ],
+ "BHF2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Adipose",
+ "Adipose mRNA"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ],
+ [
+ "Muscle",
+ "Muscle mRNA"
+ ]
+ ],
+ "BHHBF2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Adipose",
+ "Adipose mRNA"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ],
+ [
+ "Muscle",
+ "Muscle mRNA"
+ ]
+ ],
+ "BXD": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Amygdala",
+ "Amygdala mRNA"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ],
+ [
+ "Cartilage",
+ "Cartilage mRNA"
+ ],
+ [
+ "Cerebellum",
+ "Cerebellum mRNA"
+ ],
+ [
+ "Eye",
+ "Eye mRNA"
+ ],
+ [
+ "Hematopoietic Cells",
+ "Hematopoietic Cells mRNA"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Hypothalamus",
+ "Hypothalamus mRNA"
+ ],
+ [
+ "Kidney",
+ "Kidney mRNA"
+ ],
+ [
+ "Leucocytes",
+ "Leucocytes mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ],
+ [
+ "Lung",
+ "Lung mRNA"
+ ],
+ [
+ "Midbrain",
+ "Midbrain mRNA"
+ ],
+ [
+ "Muscle",
+ "Muscle mRNA"
+ ],
+ [
+ "Neocortex",
+ "Neocortex mRNA"
+ ],
+ [
+ "Nucleus Accumbens",
+ "Nucleus Accumbens mRNA"
+ ],
+ [
+ "Prefrontal Cortex",
+ "Prefrontal Cortex mRNA"
+ ],
+ [
+ "Retina",
+ "Retina mRNA"
+ ],
+ [
+ "Spleen",
+ "Spleen mRNA"
+ ],
+ [
+ "Striatum",
+ "Striatum mRNA"
+ ],
+ [
+ "T Cell (helper)",
+ "T Cell (helper) mRNA"
+ ],
+ [
+ "T Cell (regulatory)",
+ "T Cell (regulatory) mRNA"
+ ],
+ [
+ "Thymus",
+ "Thymus mRNA"
+ ],
+ [
+ "Ventral Tegmental Area",
+ "Ventral Tegmental Area mRNA"
+ ]
+ ],
+ "BXH": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Cartilage",
+ "Cartilage mRNA"
+ ]
+ ],
+ "CTB6F2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Adipose",
+ "Adipose mRNA"
+ ],
+ [
+ "Brain",
+ "Brain mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ],
+ [
+ "Muscle",
+ "Muscle mRNA"
+ ]
+ ],
+ "CXB": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Spleen",
+ "Spleen mRNA"
+ ]
+ ],
+ "HS": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ],
+ [
+ "Lung",
+ "Lung mRNA"
+ ]
+ ],
+ "HS-CC": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Striatum",
+ "Striatum mRNA"
+ ]
+ ],
+ "LXS": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Prefrontal Cortex",
+ "Prefrontal Cortex mRNA"
+ ]
+ ],
+ "MDP": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ]
+ ],
+ "NZBXFVB-N2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Mammary Tumors",
+ "Mammary Tumors mRNA"
+ ]
+ ]
+ },
+ "rat": {
+ "HXBBXH": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Adrenal Gland",
+ "Adrenal Gland mRNA"
+ ],
+ [
+ "Heart",
+ "Heart mRNA"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ],
+ [
+ "Kidney",
+ "Kidney mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
+ ],
+ [
+ "Peritoneal Fat",
+ "Peritoneal Fat mRNA"
+ ]
+ ],
+ "SRxSHRSPF2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Eye",
+ "Eye mRNA"
+ ]
+ ]
+ },
+ "soybean": {
+ "J12XJ58F2": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ]
+ ]
+ },
+ "tomato": {
+ "LXP": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ]
+ ]
+ }
+ }
+}
\ No newline at end of file
--
cgit v1.2.3
From 55d78345ba1cd2f56b1aecabf5bb3753bfd7ca13 Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Wed, 24 Oct 2012 17:39:43 -0500
Subject: Now builds json datastructure for menus correctly
---
wqflask/base/webqtlFormData.py | 57 +-
wqflask/maintenance/gen_select_dataset.py | 97 +-
wqflask/wqflask/correlation/CorrelationPage.py | 25 +-
wqflask/wqflask/search_results.py | 67 +-
.../static/new/javascript/dataset_menu_structure | 5984 ++++----------------
wqflask/wqflask/views.py | 9 +-
6 files changed, 1193 insertions(+), 5046 deletions(-)
(limited to 'wqflask/maintenance')
diff --git a/wqflask/base/webqtlFormData.py b/wqflask/base/webqtlFormData.py
index 710c9f53..ff1db0e8 100755
--- a/wqflask/base/webqtlFormData.py
+++ b/wqflask/base/webqtlFormData.py
@@ -44,9 +44,9 @@ from utility import webqtlUtil
-class webqtlFormData:
+class webqtlFormData(object):
'Represents data from a WebQTL form page, needed to generate the next page'
-
+
attrs = ('formID','RISet','genotype','samplelist','allsamplelist', 'display_variance'
'suggestive','significance','submitID','identification', 'enablevariance',
'nperm','nboot','email','incparentsf1','genotype_1','genotype_2','traitInfo')
@@ -62,7 +62,7 @@ class webqtlFormData:
print("in webqtlFormData start_vars are:", pf(start_vars))
for item in webqtlFormData.attrs:
self.__dict__[item] = None
-
+
#ZS: This is only used in DataEditingPage.py (as far as I know)
self.varianceDispName = None
@@ -103,7 +103,7 @@ class webqtlFormData:
self.ppolar = None
self.mpolar = None
-
+
print("[yellow] self.RISet is:", self.RISet)
if self.RISet:
#try:
@@ -112,13 +112,13 @@ class webqtlFormData:
#except:
# f1 = f12 = self.mpolar = self.ppolar = None
-
+
def set_number(stringy):
return int(stringy) if stringy else 2000 # Rob asked to change the default value to 2000
self.nperm = set_number(self.nperm)
self.nboot = set_number(self.nboot)
-
+
#if self.allsamplelist:
# self.allsamplelist = map(string.strip, string.split(self.allsamplelist))
@@ -134,6 +134,7 @@ class webqtlFormData:
def __getitem__(self, key):
+ print("in __getitem__")
return self.__dict__[key]
def get(self, key, default=None):
@@ -154,22 +155,22 @@ class webqtlFormData:
'''read genotype from .geno file'''
if self.RISet == 'BXD300':
self.RISet = 'BXD'
-
+
assert self.RISet, "self.RISet needs to be set"
-
+
#genotype_1 is Dataset Object without parents and f1
#genotype_2 is Dataset Object with parents and f1 (not for intercross)
-
+
self.genotype_1 = reaper.Dataset()
-
+
full_filename = os.path.join(webqtlConfig.GENODIR, self.RISet + '.geno')
-
+
# reaper barfs on unicode filenames, so here we ensure it's a string
full_filename = str(full_filename)
self.genotype_1.read(full_filename)
-
+
print("Got to after read")
-
+
try:
# NL, 07/27/2010. ParInfo has been moved from webqtlForm.py to webqtlUtil.py;
_f1, _f12, _mat, _pat = webqtlUtil.ParInfo[self.RISet]
@@ -186,16 +187,16 @@ class webqtlFormData:
else:
self.incparentsf1 = 0
self.genotype = self.genotype_1
-
+
self.samplelist = list(self.genotype.prgy)
self.f1list = []
self.parlist = []
-
+
if _f1 and _f12:
self.f1list = [_f1, _f12]
if _mat and _pat:
self.parlist = [_mat, _pat]
-
+
def readData(self, samplelist, incf1=None):
'''read user input data or from trait data and analysis form'''
@@ -213,11 +214,11 @@ class webqtlFormData:
#print("before traitfiledata self.traitfile is:", pf(self.traitfile))
- traitfiledata = getattr(self, "traitfile", None)
- traitpastedata = getattr(self, "traitpaste", None)
- variancefiledata = getattr(self, "variancefile", None)
- variancepastedata = getattr(self, "variancepaste", None)
- Nfiledata = getattr(self, "Nfile", None)
+ traitfiledata = getattr(self, "traitfile", None)
+ traitpastedata = getattr(self, "traitpaste", None)
+ variancefiledata = getattr(self, "variancefile", None)
+ variancepastedata = getattr(self, "variancepaste", None)
+ Nfiledata = getattr(self, "Nfile", None)
#### Todo: Rewrite below when we get to someone submitting their own trait #####
@@ -246,7 +247,7 @@ class webqtlFormData:
elif len(values) > len(samplelist):
values = values[:len(samplelist)]
print("now values is:", values)
-
+
if variancefiledata:
tt = variancefiledata.split()
@@ -282,16 +283,16 @@ class webqtlFormData:
def informativeStrains(self, samplelist=None, include_variances = None):
'''if readData was called, use this to output informative samples (sample with values)'''
-
+
if not samplelist:
samplelist = self.samplelist
-
+
samples = []
values = []
variances = []
-
+
#print("self.allTraitData is:", pf(self.allTraitData))
-
+
for sample in samplelist:
if sample in self.allTraitData:
_val, _var = self.allTraitData[sample].value, self.allTraitData[sample].variance
@@ -305,13 +306,13 @@ class webqtlFormData:
samples.append(sample)
values.append(_val)
variances.append(None)
-
+
return samples, values, variances, len(samples)
#def FormDataAsFloat(self, key):
- #
+ #
# #try:
# # return float(self.key)
# #except:
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py
index 33813051..9224b884 100644
--- a/wqflask/maintenance/gen_select_dataset.py
+++ b/wqflask/maintenance/gen_select_dataset.py
@@ -76,17 +76,22 @@ def get_types(groups):
types[species] = {}
for group_name, _group_full_name in group_dict:
# make group an alias to shorten the code
- group = types[species][group_name] = [("Phenotypes", "Phenotypes"),
- ("Genotypes", "Genotypes")]
- Cursor.execute("""select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from
- ProbeFreeze,
- ProbeSetFreeze, InbredSet, Tissue where ProbeFreeze.TissueId = Tissue.Id and
+ types[species][group_name] = [("Phenotypes", "Phenotypes"), ("Genotypes", "Genotypes")]
+ types[species][group_name] += build_types(species, group_name)
+ return types
+
+
+def build_types(species, group):
+ Cursor.execute("""select distinct Tissue.Name, concat(Tissue.Name, ' mRNA')
+ from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue, Species
+ where Species.Name = %s and Species.Id = InbredSet.SpeciesId and
+ InbredSet.Name = %s and
+ ProbeFreeze.TissueId = Tissue.Id and
ProbeFreeze.InbredSetId = InbredSet.Id and
- InbredSet.Name = %s and ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and
+ ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and
ProbeSetFreeze.public > %s
- order by Tissue.Name""", (group_name, webqtlConfig.PUBLICTHRESH))
- group += Cursor.fetchall()
- return types
+ order by Tissue.Name""", (species, group, webqtlConfig.PUBLICTHRESH))
+ return Cursor.fetchall()
def get_datasets(types):
@@ -97,39 +102,44 @@ def get_datasets(types):
for group, type_list in group_dict.iteritems():
datasets[species][group] = {}
for type_name, type_full_name in type_list:
- dataset_text = dataset_value = None
- if type_name == "Phenotypes":
- dataset_value = "%sPublish" % group
- if group == 'MDP':
- dataset_text = "Mouse Phenome Database"
- else:
- dataset_text = "%s Published Phenotypes" % group
-
- elif type_name == "Genotypes":
- dataset_value = "%sGeno" % group
- dataset_text = "%s Genotypes" % group
-
- if dataset_value:
- datasets[species][group][type_name] = [(dataset_value, dataset_text)]
- else:
- Cursor.execute("""select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from
- ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue where
- ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and Tissue.Name = %s
- and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId =
- InbredSet.Id and ProbeSetFreeze.public > %s order by
- ProbeSetFreeze.CreateTime desc""", (type_name,
- webqtlConfig.PUBLICTHRESH))
- datasets[species][group][type_name] = Cursor.fetchall()
-
+ datasets[species][group][type_name] = build_datasets(species, group, type_name)
return datasets
+def build_datasets(species, group, type_name):
+ dataset_text = dataset_value = None
+ if type_name == "Phenotypes":
+ dataset_value = "%sPublish" % group
+ if group == 'MDP':
+ dataset_text = "Mouse Phenome Database"
+ else:
+ dataset_text = "%s Published Phenotypes" % group
+
+ elif type_name == "Genotypes":
+ dataset_value = "%sGeno" % group
+ dataset_text = "%s Genotypes" % group
+
+ if dataset_value:
+ return [(dataset_value, dataset_text)]
+ else:
+ Cursor.execute("""select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from
+ ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue, Species where
+ Species.Name = %s and Species.Id = InbredSet.SpeciesId and
+ InbredSet.Name = %s and
+ ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and Tissue.Name = %s
+ and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId =
+ InbredSet.Id and ProbeSetFreeze.public > %s order by
+ ProbeSetFreeze.CreateTime desc""", (
+ species, group, type_name, webqtlConfig.PUBLICTHRESH))
+ return Cursor.fetchall()
+
+
def main():
species = get_species()
groups = get_groups(species)
types = get_types(groups)
datasets = get_datasets(types)
-
+
species.append(('All Species', 'All Species'))
groups['All Species'] = [('All Groups', 'All Groups')]
types['All Species'] = {}
@@ -137,18 +147,25 @@ def main():
datasets['All Species'] = {}
datasets['All Species']['All Groups'] = {}
datasets['All Species']['All Groups']['Phenotypes'] = [('All Phenotypes','All Phenotypes')]
-
+
data = dict(species=species,
groups=groups,
types=types,
datasets=datasets,
)
-
- output_file = """../wqflask/static/new/javascript/dataset_menu_structure.json"""
-
+
+ output_file = """../wqflask/static/new/javascript/dataset_menu_structure"""
+
with open(output_file, 'w') as fh:
json.dump(data, fh, indent=" ", sort_keys=True)
-
+
+ print("\nWrote file to:", output_file)
+
+def test_it():
+ types = build_types("Mouse", "BXD")
+ print("build_types:", pf(types))
+ datasets = build_datasets("Mouse", "BXD", "Hippocampus")
+ print("build_datasets:", pf(datasets))
if __name__ == '__main__':
- main()
\ No newline at end of file
+ main()
diff --git a/wqflask/wqflask/correlation/CorrelationPage.py b/wqflask/wqflask/correlation/CorrelationPage.py
index a9db493b..e48ea412 100644
--- a/wqflask/wqflask/correlation/CorrelationPage.py
+++ b/wqflask/wqflask/correlation/CorrelationPage.py
@@ -54,9 +54,6 @@ from dbFunction import webqtlDatabaseFunction
import utility.webqtlUtil #this is for parallel computing only.
import correlationFunction
-import logging
-logging.basicConfig(filename="/tmp/gn_log", level=logging.INFO)
-_log = logging.getLogger("correlation")
METHOD_SAMPLE_PEARSON = "1"
METHOD_SAMPLE_RANK = "2"
@@ -72,9 +69,9 @@ class AuthException(Exception): pass
class Trait(object):
-
-
- def __init__(self, name, raw_values = None, lit_corr = None, tissue_corr = None, p_tissue = None):
+
+
+ def __init__(self, name, raw_values = None, lit_corr = None, tissue_corr = None, p_tissue = None):
self.name = name
self.raw_values = raw_values
self.lit_corr = lit_corr
@@ -281,12 +278,12 @@ class CorrelationPage(templatePage):
def __init__(self, fd):
#print("in CorrelationPage __init__ fd is:", pf(fd.__dict__))
# Call the superclass constructor
-
+
# Put everything in fd into self
self.__dict__.update(fd.__dict__)
-
+
templatePage.__init__(self, fd)
-
+
#print("in CorrelationPage __init__ now fd is:", pf(fd.__dict__))
# Connect to the database
if not self.openMysql():
@@ -298,13 +295,13 @@ class CorrelationPage(templatePage):
sample_list = get_sample_data(fd)
print("sample_list is", pf(sample_list))
-
+
# Whether the user chose BXD Only, Non-BXD Only, or All Strains
# (replace BXD with whatever the group/inbredset name is)
# "mdp" stands for "mouse diversity panel" This is outdated; it now represents any
# cases/strains from the non-primary group
- mdp_choice = fd.MDPChoice if fd.allstrainlist else None
-
+ mdp_choice = fd.MDPChoice if fd.allstrainlist else None
+
self.species = get_species(fd, self.cursor)
#XZ, 09/18/2008: get all information about the user selected database.
@@ -334,11 +331,11 @@ class CorrelationPage(templatePage):
if len(self.sample_names) < self.corr_min_informative:
detail = ['Fewer than %d strain data were entered for %s data set. No calculation of correlation has been attempted.' % (self.corr_min_informative, fd.RISet)]
self.error(heading=None, detail=detail)
-
+
for key, value in self.__dict__.items():
if key.startswith("corr"):
print("[red] %s - %s" % (key, value))
-
+
#correlation_method = self.CORRELATION_METHODS[self.method]
#rankOrder = self.RANK_ORDERS[self.method]
diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py
index 585deb8f..d44fbcef 100644
--- a/wqflask/wqflask/search_results.py
+++ b/wqflask/wqflask/search_results.py
@@ -36,17 +36,17 @@ from wqflask import parser
from utility import webqtlUtil
from dbFunction import webqtlDatabaseFunction
-import logging
-logging.basicConfig(filename=app.config['LOGFILE'], level=logging.INFO)
-
-_log = logging.getLogger("search")
-_ch = logging.StreamHandler()
-_log.addHandler(_ch)
+#import logging
+#logging.basicConfig(filename=app.config['LOGFILE'], level=logging.INFO)
+#
+#_log = logging.getLogger("search")
+#_ch = logging.StreamHandler()
+#_log.addHandler(_ch)
from utility import formatting
import sys
-_log.info("sys.path is: %s" % (sys.path))
+#_log.info("sys.path is: %s" % (sys.path))
#from base.JinjaPage import JinjaEnv, JinjaPage
@@ -60,20 +60,29 @@ class SearchResultPage(templatePage):
nkeywords = 0
def __init__(self, fd):
+ print("initing SearchResultPage")
+ import logging_tree
+ logging_tree.printout()
self.fd = fd
if not self.openMysql():
- return
+ print("ge0")
+ #return
+ print("ge0.5")
+ #causeerror
+ print("type of fd:", type(fd))
self.database = [fd['database']]
-
+ print("ge0.55")
if not self.database or self.database == 'spacer':
#Error, No database selected
heading = "Search Result"
detail = ['''No database was selected for this search, please
go back and SELECT at least one database.''']
+ print("ge0.6")
self.error(heading=heading,detail=detail,error="No Database Selected")
- return
+ #return
+ print("ge1")
###########################################
# Names and IDs of RISet / F2 set
###########################################
@@ -102,12 +111,12 @@ class SearchResultPage(templatePage):
# Can't use paramater substitution for table names apparently
db_type = self.database[0].type + "Freeze"
print("db_type [%s]: %s" % (type(db_type), db_type))
-
+
query = '''SELECT Id, Name, FullName, confidentiality,
AuthorisedUsers FROM %s WHERE Name = %%s''' % (db_type)
-
+
self.cursor.execute(query, (individualDB,))
-
+
(indId,
indName,
indFullName,
@@ -140,6 +149,7 @@ class SearchResultPage(templatePage):
self.error(heading=heading,detail=detail,error="No Database Selected")
return
+ print("ge2")
self.database[0].getRISet()
self.databaseCrosses = [self.database[0].riset]
self.databaseCrossIds = [self.database[0].risetid]
@@ -159,6 +169,8 @@ class SearchResultPage(templatePage):
detail = ["Search can only be performed among the same type of databases"]
self.error(heading=heading,detail=detail,error="Error")
return
+
+ print("ge3")
if self.dbType == "Publish":
self.searchField = ['Phenotype.Post_publication_description',
'Phenotype.Pre_publication_description',
@@ -182,7 +194,8 @@ class SearchResultPage(templatePage):
'RefSeq_TranscriptId']
elif self.dbType == "Geno":
self.searchField = ['Name','Chr']
-
+
+ print("ge4")
self.do_search()
###########################################
@@ -202,7 +215,7 @@ class SearchResultPage(templatePage):
###########################################
# Generate Mysql Query
###########################################
-
+
# Sam: We presume lines below aren't used...
#geneIdListQuery = fd.get('geneId', '')
#if geneIdListQuery:
@@ -346,7 +359,7 @@ class SearchResultPage(templatePage):
#self.dict['js1'] = ''
#self.dict['js2'] = 'onLoad="pageOffset()"'
#self.dict['layer'] = self.generateWarningLayer()
-
+
def start_search(self):
pass
@@ -674,7 +687,7 @@ class SearchResultPage(templatePage):
item = item['search_term']
self.nkeywords += 1
#ZS: If there are both AND and OR keywords, just use the OR keywords
- if k >=len(self.ORkeyword2):
+ if k >=len(self.ORkeyword2):
query = self.ANDQuery
DescriptionText = self.ANDDescriptionText
clausejoin = ' OR '
@@ -763,7 +776,7 @@ class SearchResultPage(templatePage):
detail = ["Pattern search is not available for phenotype databases at this time."]
self.error(heading=heading,detail=detail,error="Error")
return 0
- elif (self.dbType == "ProbeSet" and
+ elif (self.dbType == "ProbeSet" and
((_2Cmds and reduce(lambda x, y: (y not in [
"MEAN", "LRS", "PVALUE", "TRANSLRS", "CISLRS", "RANGE", "H2"
]) or x, _2Cmds, False))\
@@ -877,29 +890,29 @@ class SearchResultPage(templatePage):
query = self.ORQuery
DescriptionText = self.ORDescriptionText
itemCmd = item[0]
-
-
+
+
chr_number = item[1] # chromosome number
lower_limit = float(item[2])
upper_limit = float(item[3])
-
+
if self.dbType == "ProbeSet":
fname = 'target genes'
elif self.dbType == "Geno":
fname = 'loci'
-
+
if lower_limit > upper_limit:
lower_limit, upper_limit = upper_limit, lower_limit
-
+
clauseItem = " %s.Chr = '%s' and %s.Mb > %2.7f and %s.Mb < %2.7f " % (
self.dbType, chr_number, self.dbType, lower_limit, self.dbType, upper_limit)
-
-
+
+
query.append(" (%s) " % clauseItem)
self.orderByDefalut = itemCmd
-
- self.results_desc = dict()
+
+ self.results_desc = dict()
#DescriptionText.append(HT.Span(' with ', HT.U('target genes'), ' on chromosome %s between %g and %g Mb' % \
# (chr_number, min(lower_limit, upper_limit), max(lower_limit, upper_limit))))
diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure b/wqflask/wqflask/static/new/javascript/dataset_menu_structure
index d25d3cf5..1b7e4090 100644
--- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure
+++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure
@@ -78,18 +78,6 @@
[
"B1MI0809R",
"Barley1 Leaf MOCK TTKS (Aug09) RMA"
- ],
- [
- "B30_K_1206_M",
- "Barley1 Leaf MAS 5.0 SCRI (Dec06)"
- ],
- [
- "B30_K_1206_R",
- "Barley1 Leaf gcRMA SCRI (Dec06)"
- ],
- [
- "B30_K_1206_Rn",
- "Barley1 Leaf gcRMAn SCRI (Dec06)"
]
],
"Phenotypes": [
@@ -121,33 +109,17 @@
]
],
"Leaf": [
- [
- "B1LI0809R",
- "Barley1 Leaf INOC TTKS (Aug09) RMA"
- ],
- [
- "B1LI0809M5",
- "Barley1 Leaf INOC TTKS (Aug09) MAS5"
- ],
- [
- "B1MI0809M5",
- "Barley1 Leaf MOCK TTKS (Aug09) MAS5"
- ],
- [
- "B1MI0809R",
- "Barley1 Leaf MOCK TTKS (Aug09) RMA"
- ],
[
"B30_K_1206_M",
"Barley1 Leaf MAS 5.0 SCRI (Dec06)"
],
- [
- "B30_K_1206_R",
- "Barley1 Leaf gcRMA SCRI (Dec06)"
- ],
[
"B30_K_1206_Rn",
"Barley1 Leaf gcRMAn SCRI (Dec06)"
+ ],
+ [
+ "B30_K_1206_R",
+ "Barley1 Leaf gcRMA SCRI (Dec06)"
]
],
"Phenotypes": [
@@ -176,14 +148,6 @@
[
"NCSU_DrosWB_LC_RMA_0111",
"NCSU Drosophila Whole Body (Jan11) RMA"
- ],
- [
- "UAB_DrosWB_LC_RMA_1009",
- "UAB Whole body D.m. mRNA control (Oct09) RMA"
- ],
- [
- "UAB_DrosWB_LE_RMA_1009",
- "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA"
]
]
},
@@ -201,10 +165,6 @@
]
],
"Whole Body": [
- [
- "NCSU_DrosWB_LC_RMA_0111",
- "NCSU Drosophila Whole Body (Jan11) RMA"
- ],
[
"UAB_DrosWB_LC_RMA_1009",
"UAB Whole body D.m. mRNA control (Oct09) RMA"
@@ -219,14 +179,6 @@
"human": {
"AD-cases-controls": {
"Brain": [
- [
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
[
"GSE5281_F_RMA_N_0709",
"GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
@@ -235,14 +187,6 @@
"GSE5281_F_RMA_Alzh_0709",
"GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
[
"GSE5281_F_RMA0709",
"GSE5281 Human Brain Full Liang (Jul09) RMA"
@@ -250,4683 +194,881 @@
[
"GSE5281_RMA0709",
"GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
+ ]
+ ],
+ "Genotypes": [
[
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
+ "AD-cases-controlsGeno",
+ "AD-cases-controls Genotypes"
+ ]
+ ],
+ "Phenotypes": [
[
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
+ "AD-cases-controlsPublish",
+ "AD-cases-controls Published Phenotypes"
+ ]
+ ]
+ },
+ "AD-cases-controls-Myers": {
+ "Brain": [
[
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
],
[
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
],
[
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
+ "GSE15222_F_RI_0409",
+ "GSE15222 Human Brain Myers (Apr09) RankInv"
+ ]
+ ],
+ "Genotypes": [
[
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
+ "AD-cases-controls-MyersGeno",
+ "AD-cases-controls-Myers Genotypes"
+ ]
+ ],
+ "Phenotypes": [
[
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
+ "AD-cases-controls-MyersPublish",
+ "AD-cases-controls-Myers Published Phenotypes"
+ ]
+ ]
+ },
+ "CANDLE": {
+ "Genotypes": [
[
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
+ "CANDLEGeno",
+ "CANDLE Genotypes"
+ ]
+ ],
+ "Newborn Cord Blood": [
[
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
+ "CANDLE_NB_0711",
+ "CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT **"
+ ]
+ ],
+ "Phenotypes": [
[
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
+ "CANDLEPublish",
+ "CANDLE Published Phenotypes"
+ ]
+ ]
+ },
+ "CEPH-2004": {
+ "Genotypes": [
[
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
+ "CEPH-2004Geno",
+ "CEPH-2004 Genotypes"
+ ]
+ ],
+ "Lymphoblast B-cell": [
[
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
+ "UT_CEPH_RankInv0909",
+ "UTHSC CEPH B-cells Illumina (Sep09) RankInv"
],
[
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
+ "Human_1008",
+ "Monks CEPH B-cells Agilent (Dec04) Log10Ratio"
+ ]
+ ],
+ "Phenotypes": [
[
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
+ "CEPH-2004Publish",
+ "CEPH-2004 Published Phenotypes"
+ ]
+ ]
+ },
+ "HB": {
+ "Cerebellum": [
[
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
+ "HBTRC-MLC_0611",
+ "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio"
],
[
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
+ "HBTRC-MLC_N_0611",
+ "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio"
],
[
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ "HBTRC-MLC_AD_0611",
+ "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio"
],
[
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
+ "HBTRC-MLC_HD_0611",
+ "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio"
]
],
"Genotypes": [
[
- "AD-cases-controlsGeno",
- "AD-cases-controls Genotypes"
+ "HBGeno",
+ "HB Genotypes"
]
],
"Phenotypes": [
[
- "AD-cases-controlsPublish",
- "AD-cases-controls Published Phenotypes"
+ "HBPublish",
+ "HB Published Phenotypes"
]
- ]
- },
- "AD-cases-controls-Myers": {
- "Brain": [
+ ],
+ "Prefrontal Cortex": [
[
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
+ "HBTRC-MLPFC_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
],
[
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ "HBTRC-MLPFC_N_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
],
[
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
+ "HBTRC-MLPFC_AD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
],
[
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
+ "HBTRC-MLPFC_HD_0611",
+ "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
+ ]
+ ],
+ "Primary Visual Cortex": [
[
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ "HBTRC-MLVC_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio"
],
[
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
+ "HBTRC-MLVC_N_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio"
],
[
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
+ "HBTRC-MLVC_AD_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio"
],
[
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
+ "HBTRC-MLVC_HD_0611",
+ "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio"
+ ]
+ ]
+ },
+ "HLC": {
+ "Genotypes": [
[
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
+ "HLCGeno",
+ "HLC Genotypes"
+ ]
+ ],
+ "Liver": [
[
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
],
[
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
+ "HLCM_0311",
+ "GSE9588 Human Liver Normal (Mar11) Males"
],
[
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
+ "HLCF_0311",
+ "GSE9588 Human Liver Normal (Mar11) Females"
+ ]
+ ],
+ "Phenotypes": [
[
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
+ "HLCPublish",
+ "HLC Published Phenotypes"
+ ]
+ ]
+ },
+ "HSB": {
+ "Amygdala": [
[
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
+ "KIN_YSM_AMY_0711",
+ "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Caudal Ganglionic Eminence": [
[
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
+ "KIN_YSM_CGE_0711",
+ "KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Cerebellar Cortex": [
[
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
+ "KIN_YSM_CBC_0711",
+ "KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Diencephalon": [
[
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
+ "KIN_YSM_DIE_0711",
+ "KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Dorsal Thalamus": [
[
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
+ "KIN_YSM_DTH_0711",
+ "KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Dorsolateral Prefrontal Cortex": [
[
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
+ "KIN_YSM_DFC_0711",
+ "KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Frontal Cerebral Wall": [
[
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
+ "KIN_YSM_FC_0711",
+ "KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Genotypes": [
[
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
+ "HSBGeno",
+ "HSB Genotypes"
+ ]
+ ],
+ "Hippocampus": [
[
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
+ "KIN_YSM_HIP_0711",
+ "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Inferior Temporal Cortex": [
[
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
+ "KIN_YSM_ITC_0711",
+ "KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Lateral Ganglionic Eminence": [
[
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
+ "KIN_YSM_LGE_0711",
+ "KIN/YSM Human LGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Medial Ganglionic Eminence": [
[
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
+ "KIN_YSM_MGE_0711",
+ "KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Medial Prefrontal Cortex": [
[
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
+ "KIN_YSM_MFC_0711",
+ "KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Mediodorsal Nucleus of Thalamus": [
[
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
+ "KIN_YSM_MD_0711",
+ "KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Occipital Cerebral Wall": [
[
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
+ "KIN_YSM_OC_0711",
+ "KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Orbital Prefrontal Cortex": [
[
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
+ "KIN_YSM_OFC_0711",
+ "KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Parietal Cerebral Wall": [
[
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
+ "KIN_YSM_PC_0711",
+ "KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Phenotypes": [
[
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
+ "HSBPublish",
+ "HSB Published Phenotypes"
+ ]
+ ],
+ "Posterior Inferior Parietal Cortex": [
[
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
+ "KIN_YSM_IPC_0711",
+ "KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
]
],
- "Genotypes": [
+ "Posterior Superior Temporal Cortex": [
[
- "AD-cases-controls-MyersGeno",
- "AD-cases-controls-Myers Genotypes"
+ "KIN_YSM_STC_0711",
+ "KIN/YSM Human STC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
]
],
- "Phenotypes": [
+ "Primary Auditory (A1) Cortex": [
[
- "AD-cases-controls-MyersPublish",
- "AD-cases-controls-Myers Published Phenotypes"
+ "KIN_YSM_A1C_0711",
+ "KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
]
- ]
- },
- "CANDLE": {
- "Genotypes": [
+ ],
+ "Primary Motor (M1) Cortex": [
[
- "CANDLEGeno",
- "CANDLE Genotypes"
+ "KIN_YSM_M1C_0711",
+ "KIN/YSM Human M1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
]
],
- "Newborn Cord Blood": [
+ "Primary Somatosensory (S1) Cortex": [
[
- "CANDLE_NB_0711",
- "CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT **"
+ "KIN_YSM_S1C_0711",
+ "KIN/YSM Human S1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
]
],
- "Phenotypes": [
+ "Primary Visual Cortex": [
[
- "CANDLEPublish",
- "CANDLE Published Phenotypes"
+ "KIN_YSM_V1C_0711",
+ "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
]
- ]
- },
- "CEPH-2004": {
- "Genotypes": [
+ ],
+ "Striatum": [
[
- "CEPH-2004Geno",
- "CEPH-2004 Genotypes"
+ "KIN_YSM_STR_0711",
+ "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
]
],
- "Lymphoblast B-cell": [
+ "Temporal Cerebral Wall": [
[
- "UT_CEPH_RankInv0909",
- "UTHSC CEPH B-cells Illumina (Sep09) RankInv"
- ],
+ "KIN_YSM_TC_0711",
+ "KIN/YSM Human TC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ ]
+ ],
+ "Upper (Rostral) Rhombic Lip": [
[
- "Human_1008",
- "Monks CEPH B-cells Agilent (Dec04) Log10Ratio"
+ "KIN_YSM_URL_0711",
+ "KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
]
],
- "Phenotypes": [
+ "Ventral Forebrain": [
[
- "CEPH-2004Publish",
- "CEPH-2004 Published Phenotypes"
+ "KIN_YSM_VF_0711",
+ "KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
]
- ]
- },
- "HB": {
- "Cerebellum": [
+ ],
+ "Ventrolateral Prefrontal Cortex": [
[
- "HBTRC-MLC_0611",
- "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_N_0611",
- "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_AD_0611",
- "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_HD_0611",
- "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio"
- ],
- [
- "GCB_M2_0505_M",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5"
- ],
- [
- "GCB_M2_0505_R",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA"
- ],
- [
- "GCB_M2_0505_P",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN"
- ],
- [
- "CB_M_0305_R",
- "SJUT Cerebellum mRNA M430 (Mar05) RMA"
- ],
- [
- "CB_M_0305_M",
- "SJUT Cerebellum mRNA M430 (Mar05) MAS5"
- ],
- [
- "CB_M_0305_P",
- "SJUT Cerebellum mRNA M430 (Mar05) PDNN"
- ],
- [
- "CB_M_1004_R",
- "SJUT Cerebellum mRNA M430 (Oct04) RMA"
- ],
- [
- "CB_M_1004_M",
- "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
- ],
- [
- "CB_M_1004_P",
- "SJUT Cerebellum mRNA M430 (Oct04) PDNN"
- ],
- [
- "CB_M_1003_M",
- "SJUT Cerebellum mRNA M430 (Oct03) MAS5"
- ]
- ],
- "Genotypes": [
- [
- "HBGeno",
- "HB Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "HBPublish",
- "HB Published Phenotypes"
- ]
- ],
- "Prefrontal Cortex": [
- [
- "HBTRC-MLPFC_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_N_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_AD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_HD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
- ],
- [
- "INIA_MacFas_Pf_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_PfE_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
- ],
- [
- "VCUSal_1006_R",
- "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
- ],
- [
- "VCUEtOH_1206_R",
- "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
- ],
- [
- "VCUSal_1206_R",
- "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
- ],
- [
- "VCU_PF_Air_0111_R",
- "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_Et_0111_R",
- "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_AvE_0111_Ss",
- "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
- ],
- [
- "VCUEt_vs_Sal_0806_R",
- "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
- ],
- [
- "VCUEtOH_0806_R",
- "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
- ],
- [
- "VCUSal_0806_R",
- "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
- ]
- ],
- "Primary Visual Cortex": [
- [
- "KIN_YSM_V1C_0711",
- "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "HBTRC-MLVC_0611",
- "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_N_0611",
- "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_AD_0611",
- "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_HD_0611",
- "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio"
- ]
- ]
- },
- "HLC": {
- "Genotypes": [
- [
- "HLCGeno",
- "HLC Genotypes"
- ]
- ],
- "Liver": [
- [
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
- ]
- ],
- "Phenotypes": [
- [
- "HLCPublish",
- "HLC Published Phenotypes"
- ]
- ]
- },
- "HSB": {
- "Amygdala": [
- [
- "KIN_YSM_AMY_0711",
- "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "INIA_AmgCoh_0311",
- "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_M_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
- ],
- [
- "INIA_Amg_BLA_RMA_F_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
- ],
- [
- "INIA_MacFas_AMGc_RMA_0110",
- "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_AMGe_RMA_0110",
- "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
- ]
- ],
- "Caudal Ganglionic Eminence": [
- [
- "KIN_YSM_CGE_0711",
- "KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Cerebellar Cortex": [
- [
- "KIN_YSM_CBC_0711",
- "KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Diencephalon": [
- [
- "KIN_YSM_DIE_0711",
- "KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Dorsal Thalamus": [
- [
- "KIN_YSM_DTH_0711",
- "KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Dorsolateral Prefrontal Cortex": [
- [
- "KIN_YSM_DFC_0711",
- "KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Frontal Cerebral Wall": [
- [
- "KIN_YSM_FC_0711",
- "KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Genotypes": [
- [
- "HSBGeno",
- "HSB Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
- [
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
- ]
- ],
- "Inferior Temporal Cortex": [
- [
- "KIN_YSM_ITC_0711",
- "KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Lateral Ganglionic Eminence": [
- [
- "KIN_YSM_LGE_0711",
- "KIN/YSM Human LGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Medial Ganglionic Eminence": [
- [
- "KIN_YSM_MGE_0711",
- "KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Medial Prefrontal Cortex": [
- [
- "KIN_YSM_MFC_0711",
- "KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Mediodorsal Nucleus of Thalamus": [
- [
- "KIN_YSM_MD_0711",
- "KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Occipital Cerebral Wall": [
- [
- "KIN_YSM_OC_0711",
- "KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Orbital Prefrontal Cortex": [
- [
- "KIN_YSM_OFC_0711",
- "KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Parietal Cerebral Wall": [
- [
- "KIN_YSM_PC_0711",
- "KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Phenotypes": [
- [
- "HSBPublish",
- "HSB Published Phenotypes"
- ]
- ],
- "Posterior Inferior Parietal Cortex": [
- [
- "KIN_YSM_IPC_0711",
- "KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Posterior Superior Temporal Cortex": [
- [
- "KIN_YSM_STC_0711",
- "KIN/YSM Human STC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Primary Auditory (A1) Cortex": [
- [
- "KIN_YSM_A1C_0711",
- "KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Primary Motor (M1) Cortex": [
- [
- "KIN_YSM_M1C_0711",
- "KIN/YSM Human M1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Primary Somatosensory (S1) Cortex": [
- [
- "KIN_YSM_S1C_0711",
- "KIN/YSM Human S1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Primary Visual Cortex": [
- [
- "KIN_YSM_V1C_0711",
- "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "HBTRC-MLVC_0611",
- "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_N_0611",
- "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_AD_0611",
- "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_HD_0611",
- "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio"
- ]
- ],
- "Striatum": [
- [
- "DevStriatum_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "KIN_YSM_STR_0711",
- "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "OHSU_HS-CC_ILMStr_0211",
- "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
- ],
- [
- "UTHSC_Striatum_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
- ],
- [
- "UTHSC_Str_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
- ],
- [
- "UTHSC_1107_RankInv",
- "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
- ],
- [
- "SA_M2_0905_P",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
- ],
- [
- "SA_M2_0905_M",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
- ],
- [
- "SA_M2_0905_R",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
- ],
- [
- "SA_M2_0405_MC",
- "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
- ],
- [
- "SA_M2_0405_RC",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
- ],
- [
- "SA_M2_0405_PC",
- "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
- ],
- [
- "SA_M2_0405_SS",
- "HBP Rosen Striatum M430V2 (Apr05) SScore"
- ],
- [
- "SA_M2_0405_RR",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
- ],
- [
- "Striatum_Exon_0209",
- "HQF Striatum Exon (Feb09) RMA"
- ],
- [
- "DevStriatum_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
- ]
- ],
- "Temporal Cerebral Wall": [
- [
- "KIN_YSM_TC_0711",
- "KIN/YSM Human TC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Upper (Rostral) Rhombic Lip": [
- [
- "KIN_YSM_URL_0711",
- "KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Ventral Forebrain": [
- [
- "KIN_YSM_VF_0711",
- "KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Ventrolateral Prefrontal Cortex": [
- [
- "KIN_YSM_VFC_0711",
- "KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ]
- }
- },
- "macaque monkey": {
- "Macaca-fasicularis": {
- "Amygdala": [
- [
- "KIN_YSM_AMY_0711",
- "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "INIA_AmgCoh_0311",
- "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_M_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
- ],
- [
- "INIA_Amg_BLA_RMA_F_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
- ],
- [
- "INIA_MacFas_AMGc_RMA_0110",
- "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_AMGe_RMA_0110",
- "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
- ]
- ],
- "Brain": [
- [
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
- ]
- ],
- "Genotypes": [
- [
- "Macaca-fasicularisGeno",
- "Macaca-fasicularis Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
- [
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
- ]
- ],
- "Nucleus Accumbens": [
- [
- "INIA_MacFas_Ac_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_Ae_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **"
- ],
- [
- "VCUSalo_1007_R",
- "VCU BXD NA Sal M430 2.0 (Oct07) RMA"
- ],
- [
- "VCUEtOH_1007_R",
- "VCU BXD NA EtOH M430 2.0 (Oct07) RMA **"
- ],
- [
- "VCUSal_1007_R",
- "VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **"
- ]
- ],
- "Phenotypes": [
- [
- "Macaca-fasicularisPublish",
- "Macaca-fasicularis Published Phenotypes"
- ]
- ],
- "Prefrontal Cortex": [
- [
- "HBTRC-MLPFC_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_N_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_AD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_HD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
- ],
- [
- "INIA_MacFas_Pf_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_PfE_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
- ],
- [
- "VCUSal_1006_R",
- "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
- ],
- [
- "VCUEtOH_1206_R",
- "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
- ],
- [
- "VCUSal_1206_R",
- "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
- ],
- [
- "VCU_PF_Air_0111_R",
- "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_Et_0111_R",
- "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_AvE_0111_Ss",
- "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
- ],
- [
- "VCUEt_vs_Sal_0806_R",
- "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
- ],
- [
- "VCUEtOH_0806_R",
- "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
- ],
- [
- "VCUSal_0806_R",
- "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
- ]
- ]
- }
- },
- "mouse": {
- "AKXD": {
- "Genotypes": [
- [
- "AKXDGeno",
- "AKXD Genotypes"
- ]
- ],
- "Mammary Tumors": [
- [
- "NCI_Mam_Tum_RMA_0409",
- "NCI Mammary M430v2 (Apr09) RMA"
- ],
- [
- "NCI_Agil_Mam_Tum_RMA_0409",
- "NCI Mammary LMT miRNA v2 (Apr09) RMA"
- ],
- [
- "MA_M_0704_R",
- "NCI Mammary mRNA M430 (July04) RMA"
- ],
- [
- "MA_M_0704_M",
- "NCI Mammary mRNA M430 (July04) MAS5"
- ]
- ],
- "Phenotypes": [
- [
- "AKXDPublish",
- "AKXD Published Phenotypes"
- ]
- ]
- },
- "AXBXA": {
- "Eye": [
- [
- "Eye_AXBXA_1008_RankInv",
- "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
- ],
- [
- "Eye_M2_0908_R",
- "Eye M430v2 (Sep08) RMA"
- ],
- [
- "Eye_M2_0908_R_NB",
- "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_ND",
- "Eye M430v2 WT Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_WTWT",
- "Eye M430v2 WT WT (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_WT",
- "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_MT",
- "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
- ],
- [
- "BXD_GLA_0911",
- "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
- ],
- [
- "UIOWA_Eye_RMA_0906",
- "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
- ]
- ],
- "Genotypes": [
- [
- "AXBXAGeno",
- "AXBXA Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "AXBXAPublish",
- "AXBXA Published Phenotypes"
- ]
- ]
- },
- "B6BTBRF2": {
- "Genotypes": [
- [
- "B6BTBRF2Geno",
- "B6BTBRF2 Genotypes"
- ]
- ],
- "Liver": [
- [
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
- ]
- ],
- "Phenotypes": [
- [
- "B6BTBRF2Publish",
- "B6BTBRF2 Published Phenotypes"
- ]
- ]
- },
- "B6D2F2": {
- "Brain": [
- [
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
- ]
- ],
- "Genotypes": [
- [
- "B6D2F2Geno",
- "B6D2F2 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "B6D2F2Publish",
- "B6D2F2 Published Phenotypes"
- ]
- ]
- },
- "BDF2-1999": {
- "Genotypes": [
- [
- "BDF2-1999Geno",
- "BDF2-1999 Genotypes"
- ]
- ],
- "Liver": [
- [
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
- ]
- ],
- "Phenotypes": [
- [
- "BDF2-1999Publish",
- "BDF2-1999 Published Phenotypes"
- ]
- ]
- },
- "BDF2-2005": {
- "Genotypes": [
- [
- "BDF2-2005Geno",
- "BDF2-2005 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "BDF2-2005Publish",
- "BDF2-2005 Published Phenotypes"
- ]
- ],
- "Striatum": [
- [
- "DevStriatum_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "KIN_YSM_STR_0711",
- "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "OHSU_HS-CC_ILMStr_0211",
- "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
- ],
- [
- "UTHSC_Striatum_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
- ],
- [
- "UTHSC_Str_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
- ],
- [
- "UTHSC_1107_RankInv",
- "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
- ],
- [
- "SA_M2_0905_P",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
- ],
- [
- "SA_M2_0905_M",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
- ],
- [
- "SA_M2_0905_R",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
- ],
- [
- "SA_M2_0405_MC",
- "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
- ],
- [
- "SA_M2_0405_RC",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
- ],
- [
- "SA_M2_0405_PC",
- "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
- ],
- [
- "SA_M2_0405_SS",
- "HBP Rosen Striatum M430V2 (Apr05) SScore"
- ],
- [
- "SA_M2_0405_RR",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
- ],
- [
- "Striatum_Exon_0209",
- "HQF Striatum Exon (Feb09) RMA"
- ],
- [
- "DevStriatum_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
- ]
- ]
- },
- "BHF2": {
- "Adipose": [
- [
- "UCLA_BHF2_ADIPOSE_MALE",
- "UCLA BHF2 Adipose Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
- "UCLA CTB6B6CTF2 Adipose Male mlratio **"
- ],
- [
- "UCLA_BHF2_ADIPOSE_FEMALE",
- "UCLA BHF2 Adipose Female mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
- "UCLA CTB6B6CTF2 Adipose Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_MALE",
- "UCLA BHHBF2 Adipose Male Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_FEMALE",
- "UCLA BHHBF2 Adipose Female Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_2005",
- "UCLA BHHBF2 Adipose (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_2005",
- "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_ADIPOSE_0605",
- "UCLA BHF2 Adipose (June05) mlratio"
- ]
- ],
- "Brain": [
- [
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
- ]
- ],
- "Genotypes": [
- [
- "BHF2Geno",
- "BHF2 Genotypes"
- ]
- ],
- "Liver": [
- [
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
- ]
- ],
- "Muscle": [
- [
- "EPFLMouseMuscleRMA1211",
- "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleCDRMA1211",
- "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleHFDRMA1211",
- "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
- "UCLA CTB6B6CTF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_MALE",
- "UCLA CTB6B6CTF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_FEMALE",
- "UCLA BHHBF2 Muscle Female Only"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_MALE",
- "UCLA BHHBF2 Muscle Male Only"
- ],
- [
- "UCLA_BHF2_MUSCLE_MALE",
- "UCLA BHF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_FEMALE",
- "UCLA BHF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_2005",
- "UCLA BHHBF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_2005",
- "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_0605",
- "UCLA BHF2 Muscle (June05) mlratio **"
- ]
- ],
- "Phenotypes": [
- [
- "BHF2Publish",
- "BHF2 Published Phenotypes"
- ]
- ]
- },
- "BHHBF2": {
- "Adipose": [
- [
- "UCLA_BHF2_ADIPOSE_MALE",
- "UCLA BHF2 Adipose Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
- "UCLA CTB6B6CTF2 Adipose Male mlratio **"
- ],
- [
- "UCLA_BHF2_ADIPOSE_FEMALE",
- "UCLA BHF2 Adipose Female mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
- "UCLA CTB6B6CTF2 Adipose Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_MALE",
- "UCLA BHHBF2 Adipose Male Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_FEMALE",
- "UCLA BHHBF2 Adipose Female Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_2005",
- "UCLA BHHBF2 Adipose (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_2005",
- "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_ADIPOSE_0605",
- "UCLA BHF2 Adipose (June05) mlratio"
- ]
- ],
- "Brain": [
- [
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
- ]
- ],
- "Genotypes": [
- [
- "BHHBF2Geno",
- "BHHBF2 Genotypes"
- ]
- ],
- "Liver": [
- [
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
- ]
- ],
- "Muscle": [
- [
- "EPFLMouseMuscleRMA1211",
- "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleCDRMA1211",
- "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleHFDRMA1211",
- "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
- "UCLA CTB6B6CTF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_MALE",
- "UCLA CTB6B6CTF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_FEMALE",
- "UCLA BHHBF2 Muscle Female Only"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_MALE",
- "UCLA BHHBF2 Muscle Male Only"
- ],
- [
- "UCLA_BHF2_MUSCLE_MALE",
- "UCLA BHF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_FEMALE",
- "UCLA BHF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_2005",
- "UCLA BHHBF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_2005",
- "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_0605",
- "UCLA BHF2 Muscle (June05) mlratio **"
- ]
- ],
- "Phenotypes": [
- [
- "BHHBF2Publish",
- "BHHBF2 Published Phenotypes"
- ]
- ]
- },
- "BXD": {
- "Amygdala": [
- [
- "KIN_YSM_AMY_0711",
- "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "INIA_AmgCoh_0311",
- "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_M_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
- ],
- [
- "INIA_Amg_BLA_RMA_F_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
- ],
- [
- "INIA_MacFas_AMGc_RMA_0110",
- "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_AMGe_RMA_0110",
- "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
- ]
- ],
- "Brain": [
- [
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
- ]
- ],
- "Cartilage": [
- [
- "UCLA_BXDBXH_CARTILAGE_V2",
- "UCLA BXD and BXH Cartilage v2"
- ],
- [
- "UCLA_BXHBXD_CARTILAGE_V2",
- "UCLA BXH and BXD Cartilage v2"
- ],
- [
- "UCLA_BXDBXH_CARTILAGE",
- "UCLA BXD and BXH Cartilage"
- ],
- [
- "UCLA_BXHBXD_CARTILAGE",
- "UCLA BXH and BXD Cartilage"
- ],
- [
- "UCLA_BXD_CARTILAGE",
- "UCLA BXD Cartilage"
- ],
- [
- "UCLA_BXH_CARTILAGE",
- "UCLA BXH Cartilage"
- ]
- ],
- "Cerebellum": [
- [
- "HBTRC-MLC_0611",
- "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_N_0611",
- "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_AD_0611",
- "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_HD_0611",
- "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio"
- ],
- [
- "GCB_M2_0505_M",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5"
- ],
- [
- "GCB_M2_0505_R",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA"
- ],
- [
- "GCB_M2_0505_P",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN"
- ],
- [
- "CB_M_0305_R",
- "SJUT Cerebellum mRNA M430 (Mar05) RMA"
- ],
- [
- "CB_M_0305_M",
- "SJUT Cerebellum mRNA M430 (Mar05) MAS5"
- ],
- [
- "CB_M_0305_P",
- "SJUT Cerebellum mRNA M430 (Mar05) PDNN"
- ],
- [
- "CB_M_1004_R",
- "SJUT Cerebellum mRNA M430 (Oct04) RMA"
- ],
- [
- "CB_M_1004_M",
- "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
- ],
- [
- "CB_M_1004_P",
- "SJUT Cerebellum mRNA M430 (Oct04) PDNN"
- ],
- [
- "CB_M_1003_M",
- "SJUT Cerebellum mRNA M430 (Oct03) MAS5"
- ]
- ],
- "Eye": [
- [
- "Eye_AXBXA_1008_RankInv",
- "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
- ],
- [
- "Eye_M2_0908_R",
- "Eye M430v2 (Sep08) RMA"
- ],
- [
- "Eye_M2_0908_R_NB",
- "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_ND",
- "Eye M430v2 WT Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_WTWT",
- "Eye M430v2 WT WT (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_WT",
- "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_MT",
- "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
- ],
- [
- "BXD_GLA_0911",
- "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
- ],
- [
- "UIOWA_Eye_RMA_0906",
- "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
- ]
- ],
- "Genotypes": [
- [
- "BXDGeno",
- "BXD Genotypes"
- ]
- ],
- "Hematopoietic Cells": [
- [
- "UMCG_0907_HemaStem_ori",
- "UMCG Stem Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "UMCG_0907_HemaStem",
- "UMCG Stem Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "UMCG_0907_Pro_ori",
- "UMCG Progenitor Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "UMCG_0907_Pro",
- "UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "UMCG_0907_Eryth_ori",
- "UMCG Erythroid Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "UMCG_0907_Eryth",
- "UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "UMCG_0907_Myeloid_ori",
- "UMCG Myeloid Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "UMCG_0907_Myeloid",
- "UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "HC_U_0304_R",
- "GNF Stem Cells U74Av2 (Mar04) RMA"
- ]
- ],
- "Hippocampus": [
- [
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
- [
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
- ]
- ],
- "Hypothalamus": [
- [
- "INIA_Hyp_RMA_1110",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)"
- ],
- [
- "INIA_Hyp_M_RMA_1110",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male"
- ],
- [
- "INIA_Hyp_F_RMA_1110",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female"
- ]
- ],
- "Kidney": [
- [
- "MA_M2F_0706_R",
- "Mouse kidney M430v2 Female (Aug06) RMA"
- ],
- [
- "MA_M2M_0706_R",
- "Mouse kidney M430v2 Male (Aug06) RMA"
- ],
- [
- "MA_M2_0806_R",
- "Mouse kidney M430v2 Sex Balanced (Aug06) RMA"
- ],
- [
- "MA_M2_0806_P",
- "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN"
- ],
- [
- "MA_M2_0706_P",
- "Mouse Kidney M430v2 (Jul06) PDNN"
- ],
- [
- "MA_M2_0706_R",
- "Mouse Kidney M430v2 (Jul06) RMA"
- ],
- [
- "KI_2A_0405_M",
- "MDC/CAS/ICL Kidney 230A (Apr05) MAS5"
- ],
- [
- "KI_2A_0405_Rz",
- "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8"
- ],
- [
- "KI_2A_0405_R",
- "MDC/CAS/ICL Kidney 230A (Apr05) RMA"
- ]
- ],
- "Leucocytes": [
- [
- "Illum_BXD_PBL_1108",
- "UWA Illumina PBL (Nov08) RSN **"
- ]
- ],
- "Liver": [
- [
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
- ]
- ],
- "Lung": [
- [
- "OXUKHS_ILMLung_RI0510",
- "OX UK HS ILM6v1.1 Lung (May 2010) RankInv"
- ],
- [
- "HZI_0408_R",
- "HZI Lung M430v2 (Apr08) RMA"
- ],
- [
- "HZI_0408_M",
- "HZI Lung M430v2 (Apr08) MAS5"
- ]
- ],
- "Midbrain": [
- [
- "VUBXDMouseMidBrainQ0212",
- "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (Feb12) Quantile"
- ]
- ],
- "Muscle": [
- [
- "EPFLMouseMuscleRMA1211",
- "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleCDRMA1211",
- "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleHFDRMA1211",
- "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
- "UCLA CTB6B6CTF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_MALE",
- "UCLA CTB6B6CTF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_FEMALE",
- "UCLA BHHBF2 Muscle Female Only"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_MALE",
- "UCLA BHHBF2 Muscle Male Only"
- ],
- [
- "UCLA_BHF2_MUSCLE_MALE",
- "UCLA BHF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_FEMALE",
- "UCLA BHF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_2005",
- "UCLA BHHBF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_2005",
- "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_0605",
- "UCLA BHF2 Muscle (June05) mlratio **"
- ]
- ],
- "Neocortex": [
- [
- "DevNeocortex_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "DevNeocortex_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "HQFNeoc_1210v2_RankInv",
- "HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv"
- ],
- [
- "HQFNeoc_1210_RankInv",
- "HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv"
- ],
- [
- "HQFNeoc_0208_RankInv",
- "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv"
- ],
- [
- "DevNeocortex_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv **"
- ],
- [
- "DevNeocortex_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv **"
- ]
- ],
- "Nucleus Accumbens": [
- [
- "INIA_MacFas_Ac_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_Ae_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **"
- ],
- [
- "VCUSalo_1007_R",
- "VCU BXD NA Sal M430 2.0 (Oct07) RMA"
- ],
- [
- "VCUEtOH_1007_R",
- "VCU BXD NA EtOH M430 2.0 (Oct07) RMA **"
- ],
- [
- "VCUSal_1007_R",
- "VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **"
- ]
- ],
- "Phenotypes": [
- [
- "BXDPublish",
- "BXD Published Phenotypes"
- ]
- ],
- "Prefrontal Cortex": [
- [
- "HBTRC-MLPFC_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_N_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_AD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_HD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
- ],
- [
- "INIA_MacFas_Pf_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_PfE_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
- ],
- [
- "VCUSal_1006_R",
- "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
- ],
- [
- "VCUEtOH_1206_R",
- "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
- ],
- [
- "VCUSal_1206_R",
- "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
- ],
- [
- "VCU_PF_Air_0111_R",
- "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_Et_0111_R",
- "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_AvE_0111_Ss",
- "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
- ],
- [
- "VCUEt_vs_Sal_0806_R",
- "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
- ],
- [
- "VCUEtOH_0806_R",
- "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
- ],
- [
- "VCUSal_0806_R",
- "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
- ]
- ],
- "Retina": [
- [
- "Illum_Retina_BXD_RankInv0410",
- "HEI Retina Illumina V6.2 (April 2010) RankInv"
- ],
- [
- "B6D2ONCILM_0412",
- "B6D2 ONC Illumina v6.1 (Apr12) RankInv **"
- ],
- [
- "ONCRetILM6_0412",
- "ONC Retina Illumina V6.2 (Apr12) RankInv **"
- ],
- [
- "G2HEIONCRetILM6_0911",
- "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
- ],
- [
- "HEIONCRetILM6_0911",
- "HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
- ],
- [
- "HEIONCvsCRetILM6_0911",
- "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **"
- ],
- [
- "ILM_Retina_BXD_F_RankInv1210",
- "HEI Retina Females Illumina V6.2 (Dec10) RankInv **"
- ],
- [
- "ILM_Retina_BXD_M_RankInv1210",
- "HEI Retina Males Illumina V6.2 (Dec10) RankInv **"
- ],
- [
- "ILM_Retina_BXD_FM_RankInv1210",
- "HEI Retina F-M Illumina V6.2 (Dec10) RankInv **"
- ],
- [
- "G2NEI_ILM_Retina_BXD_RI0410",
- "G2NEI Retina Illumina V6.2 (April 2010) RankInv **"
- ]
- ],
- "Spleen": [
- [
- "UTHSC_SPL_RMA_1210",
- "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
- ],
- [
- "UTHSC_SPL_RMA_1010",
- "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA"
- ],
- [
- "IoP_SPL_RMA_0509",
- "IoP Affy MOE 430v2 Spleen (May09) RMA"
- ],
- [
- "Illum_BXD_Spl_1108",
- "UWA Illumina Spleen (Nov08) RSN **"
- ],
- [
- "UTK_BXDSpl_VST_0110",
- "UTK Spleen ILM6.1 (Jan10) VST"
- ],
- [
- "STSPL_1107_R",
- "Stuart Spleen M430v2 (Nov07) RMA"
- ]
- ],
- "Striatum": [
- [
- "DevStriatum_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "KIN_YSM_STR_0711",
- "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "OHSU_HS-CC_ILMStr_0211",
- "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
- ],
- [
- "UTHSC_Striatum_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
- ],
- [
- "UTHSC_Str_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
- ],
- [
- "UTHSC_1107_RankInv",
- "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
- ],
- [
- "SA_M2_0905_P",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
- ],
- [
- "SA_M2_0905_M",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
- ],
- [
- "SA_M2_0905_R",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
- ],
- [
- "SA_M2_0405_MC",
- "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
- ],
- [
- "SA_M2_0405_RC",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
- ],
- [
- "SA_M2_0405_PC",
- "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
- ],
- [
- "SA_M2_0405_SS",
- "HBP Rosen Striatum M430V2 (Apr05) SScore"
- ],
- [
- "SA_M2_0405_RR",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
- ],
- [
- "Striatum_Exon_0209",
- "HQF Striatum Exon (Feb09) RMA"
- ],
- [
- "DevStriatum_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
- ]
- ],
- "T Cell (helper)": [
- [
- "RTHC_0211_R",
- "HZI Thelp M430v2 (Feb11) RMA"
- ]
- ],
- "T Cell (regulatory)": [
- [
- "RTC_1106_R",
- "HZI Treg M430v2 (Feb11) RMA"
- ]
- ],
- "Thymus": [
- [
- "Illum_BXD_Thy_1108",
- "UWA Illumina Thymus (Nov08) RSN **"
- ]
- ],
- "Ventral Tegmental Area": [
- [
- "VCUEtvsSal_0609_R",
- "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **"
- ],
- [
- "VCUEtOH_0609_R",
- "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **"
- ],
- [
- "VCUSal_0609_R",
- "VCU BXD VTA Sal M430 2.0 (Jun09) RMA **"
- ]
- ]
- },
- "BXH": {
- "Cartilage": [
- [
- "UCLA_BXDBXH_CARTILAGE_V2",
- "UCLA BXD and BXH Cartilage v2"
- ],
- [
- "UCLA_BXHBXD_CARTILAGE_V2",
- "UCLA BXH and BXD Cartilage v2"
- ],
- [
- "UCLA_BXDBXH_CARTILAGE",
- "UCLA BXD and BXH Cartilage"
- ],
- [
- "UCLA_BXHBXD_CARTILAGE",
- "UCLA BXH and BXD Cartilage"
- ],
- [
- "UCLA_BXD_CARTILAGE",
- "UCLA BXD Cartilage"
- ],
- [
- "UCLA_BXH_CARTILAGE",
- "UCLA BXH Cartilage"
- ]
- ],
- "Genotypes": [
- [
- "BXHGeno",
- "BXH Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "BXHPublish",
- "BXH Published Phenotypes"
- ]
- ]
- },
- "CTB6F2": {
- "Adipose": [
- [
- "UCLA_BHF2_ADIPOSE_MALE",
- "UCLA BHF2 Adipose Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
- "UCLA CTB6B6CTF2 Adipose Male mlratio **"
- ],
- [
- "UCLA_BHF2_ADIPOSE_FEMALE",
- "UCLA BHF2 Adipose Female mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
- "UCLA CTB6B6CTF2 Adipose Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_MALE",
- "UCLA BHHBF2 Adipose Male Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_FEMALE",
- "UCLA BHHBF2 Adipose Female Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_2005",
- "UCLA BHHBF2 Adipose (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_2005",
- "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_ADIPOSE_0605",
- "UCLA BHF2 Adipose (June05) mlratio"
- ]
- ],
- "Brain": [
- [
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
- ]
- ],
- "Genotypes": [
- [
- "CTB6F2Geno",
- "CTB6F2 Genotypes"
- ]
- ],
- "Liver": [
- [
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
- ]
- ],
- "Muscle": [
- [
- "EPFLMouseMuscleRMA1211",
- "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleCDRMA1211",
- "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleHFDRMA1211",
- "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
- "UCLA CTB6B6CTF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_MALE",
- "UCLA CTB6B6CTF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_FEMALE",
- "UCLA BHHBF2 Muscle Female Only"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_MALE",
- "UCLA BHHBF2 Muscle Male Only"
- ],
- [
- "UCLA_BHF2_MUSCLE_MALE",
- "UCLA BHF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_FEMALE",
- "UCLA BHF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_2005",
- "UCLA BHHBF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_2005",
- "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_0605",
- "UCLA BHF2 Muscle (June05) mlratio **"
- ]
- ],
- "Phenotypes": [
- [
- "CTB6F2Publish",
- "CTB6F2 Published Phenotypes"
+ "KIN_YSM_VFC_0711",
+ "KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
]
]
- },
- "CXB": {
- "Genotypes": [
- [
- "CXBGeno",
- "CXB Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
- [
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
+ }
+ },
+ "macaque monkey": {
+ "Macaca-fasicularis": {
+ "Amygdala": [
[
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ "INIA_MacFas_AMGc_RMA_0110",
+ "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
],
[
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
+ "INIA_MacFas_AMGe_RMA_0110",
+ "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
+ ]
+ ],
+ "Brain": [
[
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
+ "INIA_MacFas_brain_RMA_0110",
+ "INIA Macaca fasicularis Brain (Jan10) RMA **"
]
],
- "Phenotypes": [
+ "Genotypes": [
[
- "CXBPublish",
- "CXB Published Phenotypes"
+ "Macaca-fasicularisGeno",
+ "Macaca-fasicularis Genotypes"
]
],
- "Spleen": [
+ "Hippocampus": [
[
- "UTHSC_SPL_RMA_1210",
- "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
+ "INIA_MacFas_Hc_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
],
[
- "UTHSC_SPL_RMA_1010",
- "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA"
- ],
+ "INIA_MacFas_He_RMA_0110",
+ "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ ]
+ ],
+ "Nucleus Accumbens": [
[
- "IoP_SPL_RMA_0509",
- "IoP Affy MOE 430v2 Spleen (May09) RMA"
+ "INIA_MacFas_Ac_RMA_0110",
+ "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **"
],
[
- "Illum_BXD_Spl_1108",
- "UWA Illumina Spleen (Nov08) RSN **"
- ],
+ "INIA_MacFas_Ae_RMA_0110",
+ "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **"
+ ]
+ ],
+ "Phenotypes": [
[
- "UTK_BXDSpl_VST_0110",
- "UTK Spleen ILM6.1 (Jan10) VST"
+ "Macaca-fasicularisPublish",
+ "Macaca-fasicularis Published Phenotypes"
+ ]
+ ],
+ "Prefrontal Cortex": [
+ [
+ "INIA_MacFas_Pf_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
],
[
- "STSPL_1107_R",
- "Stuart Spleen M430v2 (Nov07) RMA"
+ "INIA_MacFas_PfE_RMA_0110",
+ "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
]
]
- },
- "HS": {
+ }
+ },
+ "mouse": {
+ "AKXD": {
"Genotypes": [
[
- "HSGeno",
- "HS Genotypes"
+ "AKXDGeno",
+ "AKXD Genotypes"
]
],
- "Hippocampus": [
- [
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
+ "Mammary Tumors": [
[
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
+ "NCI_Agil_Mam_Tum_RMA_0409",
+ "NCI Mammary LMT miRNA v2 (Apr09) RMA"
],
[
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
+ "MA_M_0704_R",
+ "NCI Mammary mRNA M430 (July04) RMA"
],
[
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
+ "MA_M_0704_M",
+ "NCI Mammary mRNA M430 (July04) MAS5"
+ ]
+ ],
+ "Phenotypes": [
[
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
+ "AKXDPublish",
+ "AKXD Published Phenotypes"
+ ]
+ ]
+ },
+ "AXBXA": {
+ "Eye": [
[
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
+ "Eye_AXBXA_1008_RankInv",
+ "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
+ ]
+ ],
+ "Genotypes": [
[
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
+ "AXBXAGeno",
+ "AXBXA Genotypes"
+ ]
+ ],
+ "Phenotypes": [
[
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
+ "AXBXAPublish",
+ "AXBXA Published Phenotypes"
+ ]
+ ]
+ },
+ "B6BTBRF2": {
+ "Genotypes": [
[
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
+ "B6BTBRF2Geno",
+ "B6BTBRF2 Genotypes"
+ ]
+ ],
+ "Liver": [
[
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
],
[
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
+ "LVF2_M_0704_M",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ]
+ ],
+ "Phenotypes": [
[
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
+ "B6BTBRF2Publish",
+ "B6BTBRF2 Published Phenotypes"
+ ]
+ ]
+ },
+ "B6D2F2": {
+ "Brain": [
[
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ "BRF2_M_0805_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
],
[
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ "BRF2_M_0805_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
],
[
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
],
[
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ "BRF2_M_0304_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
],
[
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
],
[
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
+ "BRF2_M_0304_M",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ]
+ ],
+ "Genotypes": [
[
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
+ "B6D2F2Geno",
+ "B6D2F2 Genotypes"
+ ]
+ ],
+ "Phenotypes": [
[
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
+ "B6D2F2Publish",
+ "B6D2F2 Published Phenotypes"
+ ]
+ ]
+ },
+ "BDF2-1999": {
+ "Genotypes": [
[
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
+ "BDF2-1999Geno",
+ "BDF2-1999 Genotypes"
+ ]
+ ],
+ "Liver": [
[
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
+ "UCLA_BDF2_LIVER_1999",
+ "UCLA BDF2 Liver (1999) mlratio"
+ ]
+ ],
+ "Phenotypes": [
[
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
+ "BDF2-1999Publish",
+ "BDF2-1999 Published Phenotypes"
+ ]
+ ]
+ },
+ "BDF2-2005": {
+ "Genotypes": [
[
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
+ "BDF2-2005Geno",
+ "BDF2-2005 Genotypes"
]
],
- "Liver": [
+ "Phenotypes": [
[
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
+ "BDF2-2005Publish",
+ "BDF2-2005 Published Phenotypes"
+ ]
+ ],
+ "Striatum": [
[
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
+ "SA_M2_0905_R",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
],
[
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
+ "SA_M2_0905_M",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
],
[
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
+ "SA_M2_0905_P",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
+ ]
+ ]
+ },
+ "BHF2": {
+ "Adipose": [
[
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ "UCLA_BHF2_ADIPOSE_MALE",
+ "UCLA BHF2 Adipose Male mlratio"
],
[
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
+ "UCLA_BHF2_ADIPOSE_FEMALE",
+ "UCLA BHF2 Adipose Female mlratio"
],
[
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
+ "UCLA_BHF2_ADIPOSE_0605",
+ "UCLA BHF2 Adipose (June05) mlratio"
+ ]
+ ],
+ "Brain": [
[
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
],
[
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
+ "UCLA_BHF2_BRAIN_FEMALE",
+ "UCLA BHF2 Brain Female mlratio"
],
[
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
+ "UCLA_BHF2_BRAIN_0605",
+ "UCLA BHF2 Brain (June05) mlratio"
+ ]
+ ],
+ "Genotypes": [
[
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
+ "BHF2Geno",
+ "BHF2 Genotypes"
+ ]
+ ],
+ "Liver": [
[
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
],
[
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ "UCLA_BHF2_LIVER_FEMALE",
+ "UCLA BHF2 Liver Female mlratio"
],
[
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
+ "UCLA_BHF2_LIVER_0605",
+ "UCLA BHF2 Liver (June05) mlratio"
+ ]
+ ],
+ "Muscle": [
[
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ "UCLA_BHF2_MUSCLE_MALE",
+ "UCLA BHF2 Muscle Male mlratio **"
],
[
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ "UCLA_BHF2_MUSCLE_FEMALE",
+ "UCLA BHF2 Muscle Female mlratio **"
],
[
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
+ "UCLA_BHF2_MUSCLE_0605",
+ "UCLA BHF2 Muscle (June05) mlratio **"
+ ]
+ ],
+ "Phenotypes": [
[
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
+ "BHF2Publish",
+ "BHF2 Published Phenotypes"
+ ]
+ ]
+ },
+ "BHHBF2": {
+ "Adipose": [
[
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ "UCLA_BHHBF2_ADIPOSE_MALE",
+ "UCLA BHHBF2 Adipose Male Only"
],
[
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
+ "UCLA_BHHBF2_ADIPOSE_FEMALE",
+ "UCLA BHHBF2 Adipose Female Only"
],
[
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ "UCLA_BHHBF2_ADIPOSE_2005",
+ "UCLA BHHBF2 Adipose (2005) mlratio **"
+ ]
+ ],
+ "Brain": [
+ [
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
],
[
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
+ "UCLA_BHHBF2_BRAIN_FEMALE",
+ "UCLA BHHBF2 Brain Female Only"
],
+ [
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio **"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "BHHBF2Geno",
+ "BHHBF2 Genotypes"
+ ]
+ ],
+ "Liver": [
[
"UCLA_BHHBF2_LIVER_MALE",
"UCLA BHHBF2 Liver Male Only"
],
[
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
],
[
"UCLA_BHHBF2_LIVER_2005",
"UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
]
],
- "Lung": [
+ "Muscle": [
[
- "OXUKHS_ILMLung_RI0510",
- "OX UK HS ILM6v1.1 Lung (May 2010) RankInv"
+ "UCLA_BHHBF2_MUSCLE_MALE",
+ "UCLA BHHBF2 Muscle Male Only"
],
[
- "HZI_0408_R",
- "HZI Lung M430v2 (Apr08) RMA"
+ "UCLA_BHHBF2_MUSCLE_FEMALE",
+ "UCLA BHHBF2 Muscle Female Only"
],
[
- "HZI_0408_M",
- "HZI Lung M430v2 (Apr08) MAS5"
+ "UCLA_BHHBF2_MUSCLE_2005",
+ "UCLA BHHBF2 Muscle (2005) mlratio **"
]
],
"Phenotypes": [
[
- "HSPublish",
- "HS Published Phenotypes"
+ "BHHBF2Publish",
+ "BHHBF2 Published Phenotypes"
]
]
},
- "HS-CC": {
- "Genotypes": [
- [
- "HS-CCGeno",
- "HS-CC Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "HS-CCPublish",
- "HS-CC Published Phenotypes"
- ]
- ],
- "Striatum": [
- [
- "DevStriatum_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "KIN_YSM_STR_0711",
- "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
+ "BXD": {
+ "Amygdala": [
[
- "OHSU_HS-CC_ILMStr_0211",
- "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
+ "INIA_AmgCoh_0311",
+ "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
],
[
- "UTHSC_Striatum_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
+ "INIA_Amg_BLA_RMA_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
],
[
- "UTHSC_Str_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
+ "INIA_Amg_BLA_RMA_M_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
],
[
- "UTHSC_1107_RankInv",
- "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
- ],
+ "INIA_Amg_BLA_RMA_F_1110",
+ "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
+ ]
+ ],
+ "Brain": [
[
- "SA_M2_0905_P",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
+ "BR_M2_1106_R",
+ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
],
[
- "SA_M2_0905_M",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
+ "BR_U_1105_P",
+ "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
],
[
- "SA_M2_0905_R",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
],
[
- "SA_M2_0405_MC",
- "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
+ "BR_U_0805_R",
+ "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
],
[
- "SA_M2_0405_RC",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
],
[
- "SA_M2_0405_PC",
- "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
- ],
+ "CB_M_0204_P",
+ "INIA Brain mRNA M430 (Feb04) PDNN"
+ ]
+ ],
+ "Cartilage": [
[
- "SA_M2_0405_SS",
- "HBP Rosen Striatum M430V2 (Apr05) SScore"
+ "UCLA_BXDBXH_CARTILAGE_V2",
+ "UCLA BXD and BXH Cartilage v2"
],
[
- "SA_M2_0405_RR",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
+ "UCLA_BXDBXH_CARTILAGE",
+ "UCLA BXD and BXH Cartilage"
],
[
- "Striatum_Exon_0209",
- "HQF Striatum Exon (Feb09) RMA"
+ "UCLA_BXD_CARTILAGE",
+ "UCLA BXD Cartilage"
+ ]
+ ],
+ "Cerebellum": [
+ [
+ "CB_M_1004_M",
+ "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
],
[
- "DevStriatum_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
+ "CB_M_1004_R",
+ "SJUT Cerebellum mRNA M430 (Oct04) RMA"
],
[
- "DevStriatum_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
- ]
- ]
- },
- "LXS": {
- "Genotypes": [
+ "CB_M_1004_P",
+ "SJUT Cerebellum mRNA M430 (Oct04) PDNN"
+ ],
[
- "LXSGeno",
- "LXS Genotypes"
+ "CB_M_1003_M",
+ "SJUT Cerebellum mRNA M430 (Oct03) MAS5"
]
],
- "Hippocampus": [
+ "Eye": [
[
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Eye_M2_0908_R",
+ "Eye M430v2 (Sep08) RMA"
],
[
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
+ "Eye_M2_0908_R_NB",
+ "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
],
[
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ "Eye_M2_0908_R_ND",
+ "Eye M430v2 WT Gpnmb (Sep08) RMA **"
],
[
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ "Eye_M2_0908_R_WT",
+ "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
],
[
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ "Eye_M2_0908_WTWT",
+ "Eye M430v2 WT WT (Sep08) RMA **"
],
[
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ "Eye_M2_0908_R_MT",
+ "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
],
[
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ "BXD_GLA_0911",
+ "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
+ ]
+ ],
+ "Genotypes": [
+ [
+ "BXDGeno",
+ "BXD Genotypes"
+ ]
+ ],
+ "Hematopoietic Cells": [
+ [
+ "UMCG_0907_HemaStem_ori",
+ "UMCG Stem Cells ILM6v1.1 (Apr09) original"
],
[
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
+ "UMCG_0907_HemaStem",
+ "UMCG Stem Cells ILM6v1.1 (Apr09) transformed"
],
[
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
+ "UMCG_0907_Pro_ori",
+ "UMCG Progenitor Cells ILM6v1.1 (Apr09) original"
],
[
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
+ "UMCG_0907_Pro",
+ "UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed"
],
[
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
+ "UMCG_0907_Eryth_ori",
+ "UMCG Erythroid Cells ILM6v1.1 (Apr09) original"
],
[
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
+ "UMCG_0907_Eryth",
+ "UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed"
],
[
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
+ "UMCG_0907_Myeloid_ori",
+ "UMCG Myeloid Cells ILM6v1.1 (Apr09) original"
],
[
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
+ "UMCG_0907_Myeloid",
+ "UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed"
],
+ [
+ "HC_U_0304_R",
+ "GNF Stem Cells U74Av2 (Mar04) RMA"
+ ]
+ ],
+ "Hippocampus": [
[
"HC_M2_0606_P",
"Hippocampus Consortium M430v2 (Jun06) PDNN"
@@ -4939,14 +1081,6 @@
"HC_M2_0606_R",
"Hippocampus Consortium M430v2 (Jun06) RMA"
],
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
[
"UMUTAffyExon_0209_RMA",
"UMUTAffy Hippocampus Exon (Feb09) RMA"
@@ -4970,63 +1104,169 @@
[
"UT_ILM_BXD_hipp_RSE_0909",
"UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ]
+ ],
+ "Hypothalamus": [
+ [
+ "INIA_Hyp_RMA_1110",
+ "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)"
],
[
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ "INIA_Hyp_M_RMA_1110",
+ "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male"
],
[
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ "INIA_Hyp_F_RMA_1110",
+ "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female"
+ ]
+ ],
+ "Kidney": [
+ [
+ "MA_M2F_0706_R",
+ "Mouse kidney M430v2 Female (Aug06) RMA"
],
[
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ "MA_M2M_0706_R",
+ "Mouse kidney M430v2 Male (Aug06) RMA"
],
[
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ "MA_M2_0806_R",
+ "Mouse kidney M430v2 Sex Balanced (Aug06) RMA"
],
[
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
+ "MA_M2_0806_P",
+ "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN"
+ ],
+ [
+ "MA_M2_0706_P",
+ "Mouse Kidney M430v2 (Jul06) PDNN"
+ ],
+ [
+ "MA_M2_0706_R",
+ "Mouse Kidney M430v2 (Jul06) RMA"
]
],
- "Phenotypes": [
+ "Leucocytes": [
[
- "LXSPublish",
- "LXS Published Phenotypes"
+ "Illum_BXD_PBL_1108",
+ "UWA Illumina PBL (Nov08) RSN **"
]
],
- "Prefrontal Cortex": [
+ "Liver": [
[
- "HBTRC-MLPFC_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
+ "GSE16780_UCLA_ML0911",
+ "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
],
[
- "HBTRC-MLPFC_N_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
+ "GenEx_BXD_liverSal_RMA_F_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_M_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverSal_RMA_0211",
+ "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_F_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_M_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ ],
+ [
+ "GenEx_BXD_liverEt_RMA_0211",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ ],
+ [
+ "SUH_Liv_RMA_0611",
+ "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ ]
+ ],
+ "Lung": [
+ [
+ "HZI_0408_R",
+ "HZI Lung M430v2 (Apr08) RMA"
+ ],
+ [
+ "HZI_0408_M",
+ "HZI Lung M430v2 (Apr08) MAS5"
+ ]
+ ],
+ "Midbrain": [
+ [
+ "VUBXDMouseMidBrainQ0212",
+ "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (Feb12) Quantile"
+ ]
+ ],
+ "Muscle": [
+ [
+ "EPFLMouseMuscleRMA1211",
+ "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleHFDRMA1211",
+ "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ],
+ [
+ "EPFLMouseMuscleCDRMA1211",
+ "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ ]
+ ],
+ "Neocortex": [
+ [
+ "DevNeocortex_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "DevNeocortex_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
+ "HQFNeoc_1210v2_RankInv",
+ "HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv"
+ ],
+ [
+ "HQFNeoc_1210_RankInv",
+ "HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv"
],
[
- "HBTRC-MLPFC_AD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
+ "HQFNeoc_0208_RankInv",
+ "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv"
],
[
- "HBTRC-MLPFC_HD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
+ "DevNeocortex_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv **"
],
[
- "INIA_MacFas_Pf_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
- ],
+ "DevNeocortex_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv **"
+ ]
+ ],
+ "Nucleus Accumbens": [
[
- "INIA_MacFas_PfE_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
+ "VCUSalo_1007_R",
+ "VCU BXD NA Sal M430 2.0 (Oct07) RMA"
],
[
- "VCUSal_1006_R",
- "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
+ "VCUEtOH_1007_R",
+ "VCU BXD NA EtOH M430 2.0 (Oct07) RMA **"
],
+ [
+ "VCUSal_1007_R",
+ "VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "BXDPublish",
+ "BXD Published Phenotypes"
+ ]
+ ],
+ "Prefrontal Cortex": [
[
"VCUEtOH_1206_R",
"VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
@@ -5035,6 +1275,10 @@
"VCUSal_1206_R",
"VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
],
+ [
+ "VCUSal_1006_R",
+ "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
+ ],
[
"VCU_PF_Air_0111_R",
"VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
@@ -5046,365 +1290,347 @@
[
"VCU_PF_AvE_0111_Ss",
"VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
- ],
- [
- "VCUEt_vs_Sal_0806_R",
- "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
- ],
- [
- "VCUEtOH_0806_R",
- "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
- ],
- [
- "VCUSal_0806_R",
- "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
- ]
- ]
- },
- "MDP": {
- "Genotypes": [
- [
- "MDPGeno",
- "MDP Genotypes"
]
],
- "Hippocampus": [
- [
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
+ "Retina": [
[
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ "Illum_Retina_BXD_RankInv0410",
+ "HEI Retina Illumina V6.2 (April 2010) RankInv"
],
[
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
+ "B6D2ONCILM_0412",
+ "B6D2 ONC Illumina v6.1 (Apr12) RankInv **"
],
[
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
+ "ONCRetILM6_0412",
+ "ONC Retina Illumina V6.2 (Apr12) RankInv **"
],
[
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ "HEIONCvsCRetILM6_0911",
+ "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **"
],
[
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ "G2HEIONCRetILM6_0911",
+ "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
],
[
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
+ "HEIONCRetILM6_0911",
+ "HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
],
[
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
+ "ILM_Retina_BXD_F_RankInv1210",
+ "HEI Retina Females Illumina V6.2 (Dec10) RankInv **"
],
[
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
+ "ILM_Retina_BXD_M_RankInv1210",
+ "HEI Retina Males Illumina V6.2 (Dec10) RankInv **"
],
[
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
+ "ILM_Retina_BXD_FM_RankInv1210",
+ "HEI Retina F-M Illumina V6.2 (Dec10) RankInv **"
],
[
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
+ "G2NEI_ILM_Retina_BXD_RI0410",
+ "G2NEI Retina Illumina V6.2 (April 2010) RankInv **"
+ ]
+ ],
+ "Spleen": [
[
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
+ "UTHSC_SPL_RMA_1210",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
],
[
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
+ "UTHSC_SPL_RMA_1010",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA"
],
[
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ "IoP_SPL_RMA_0509",
+ "IoP Affy MOE 430v2 Spleen (May09) RMA"
],
[
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
+ "Illum_BXD_Spl_1108",
+ "UWA Illumina Spleen (Nov08) RSN **"
],
[
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
+ "UTK_BXDSpl_VST_0110",
+ "UTK Spleen ILM6.1 (Jan10) VST"
+ ]
+ ],
+ "Striatum": [
[
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
+ "DevStriatum_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
],
[
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ "DevStriatum_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
],
[
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
+ "UTHSC_Striatum_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
],
[
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
+ "UTHSC_Str_RankInv_1210",
+ "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
],
[
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ "UTHSC_1107_RankInv",
+ "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
],
[
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ "SA_M2_0405_MC",
+ "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
],
[
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ "SA_M2_0405_RC",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
],
[
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ "SA_M2_0405_PC",
+ "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
],
[
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
+ "SA_M2_0405_SS",
+ "HBP Rosen Striatum M430V2 (Apr05) SScore"
],
[
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
+ "SA_M2_0405_RR",
+ "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
],
[
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
+ "Striatum_Exon_0209",
+ "HQF Striatum Exon (Feb09) RMA"
],
[
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
+ "DevStriatum_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
],
[
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
+ "DevStriatum_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
]
],
- "Liver": [
- [
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
+ "T Cell (helper)": [
[
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
+ "RTHC_0211_R",
+ "HZI Thelp M430v2 (Feb11) RMA"
+ ]
+ ],
+ "T Cell (regulatory)": [
[
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
+ "RTC_1106_R",
+ "HZI Treg M430v2 (Feb11) RMA"
+ ]
+ ],
+ "Thymus": [
[
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
+ "Illum_BXD_Thy_1108",
+ "UWA Illumina Thymus (Nov08) RSN **"
+ ]
+ ],
+ "Ventral Tegmental Area": [
[
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
+ "VCUEtOH_0609_R",
+ "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **"
],
[
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
+ "VCUSal_0609_R",
+ "VCU BXD VTA Sal M430 2.0 (Jun09) RMA **"
],
[
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
+ "VCUEtvsSal_0609_R",
+ "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **"
+ ]
+ ]
+ },
+ "BXH": {
+ "Cartilage": [
[
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
+ "UCLA_BXHBXD_CARTILAGE_V2",
+ "UCLA BXH and BXD Cartilage v2"
],
[
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
+ "UCLA_BXHBXD_CARTILAGE",
+ "UCLA BXH and BXD Cartilage"
],
[
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
+ "UCLA_BXH_CARTILAGE",
+ "UCLA BXH Cartilage"
+ ]
+ ],
+ "Genotypes": [
[
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
+ "BXHGeno",
+ "BXH Genotypes"
+ ]
+ ],
+ "Phenotypes": [
[
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
+ "BXHPublish",
+ "BXH Published Phenotypes"
+ ]
+ ]
+ },
+ "CTB6F2": {
+ "Adipose": [
[
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
+ "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
+ "UCLA CTB6B6CTF2 Adipose Male mlratio **"
],
[
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
+ "UCLA CTB6B6CTF2 Adipose Female mlratio **"
],
[
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
+ "UCLA_CTB6B6CTF2_ADIPOSE_2005",
+ "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
+ ]
+ ],
+ "Brain": [
[
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
],
[
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
],
[
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ ]
+ ],
+ "Genotypes": [
[
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
+ "CTB6F2Geno",
+ "CTB6F2 Genotypes"
+ ]
+ ],
+ "Liver": [
+ [
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
],
[
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
+ "UCLA_CTB6B6CTF2_LIVER_FEMALE",
+ "UCLA CTB6B6CTF2 Liver Female mlratio **"
],
[
"UCLA_CTB6B6CTF2_LIVER_2005",
"UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
+ ]
+ ],
+ "Muscle": [
[
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
+ "UCLA_CTB6B6CTF2_MUSCLE_MALE",
+ "UCLA CTB6B6CTF2 Muscle Male mlratio **"
],
[
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
+ "UCLA CTB6B6CTF2 Muscle Female mlratio **"
],
[
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
+ "UCLA_CTB6B6CTF2_MUSCLE_2005",
+ "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
]
],
"Phenotypes": [
[
- "MDPPublish",
- "Mouse Phenome Database"
+ "CTB6F2Publish",
+ "CTB6F2 Published Phenotypes"
]
]
},
- "NZBXFVB-N2": {
+ "CXB": {
"Genotypes": [
[
- "NZBXFVB-N2Geno",
- "NZBXFVB-N2 Genotypes"
+ "CXBGeno",
+ "CXB Genotypes"
]
],
- "Mammary Tumors": [
- [
- "NCI_Mam_Tum_RMA_0409",
- "NCI Mammary M430v2 (Apr09) RMA"
- ],
- [
- "NCI_Agil_Mam_Tum_RMA_0409",
- "NCI Mammary LMT miRNA v2 (Apr09) RMA"
- ],
+ "Hippocampus": [
[
- "MA_M_0704_R",
- "NCI Mammary mRNA M430 (July04) RMA"
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
],
[
- "MA_M_0704_M",
- "NCI Mammary mRNA M430 (July04) MAS5"
+ "HC_M2CB_1205_P",
+ "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
]
],
"Phenotypes": [
[
- "NZBXFVB-N2Publish",
- "NZBXFVB-N2 Published Phenotypes"
+ "CXBPublish",
+ "CXB Published Phenotypes"
]
- ]
- }
- },
- "rat": {
- "HXBBXH": {
- "Adrenal Gland": [
+ ],
+ "Spleen": [
[
- "HXB_Adrenal_1208",
- "MDC/CAS/UCL Adrenal 230A (Dec08) RMA"
+ "STSPL_1107_R",
+ "Stuart Spleen M430v2 (Nov07) RMA"
]
- ],
+ ]
+ },
+ "HS": {
"Genotypes": [
[
- "HXBBXHGeno",
- "HXBBXH Genotypes"
+ "HSGeno",
+ "HS Genotypes"
]
],
- "Heart": [
+ "Hippocampus": [
[
- "HXB_Heart_1208",
- "MDC/CAS/UCL Heart 230_V2 (Dec08) RMA"
+ "OXUKHS_ILMHipp_RI0510",
+ "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
]
],
- "Hippocampus": [
+ "Liver": [
[
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
+ "OXUKHS_ILMLiver_RI0510",
+ "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
+ ]
+ ],
+ "Lung": [
[
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
+ "OXUKHS_ILMLung_RI0510",
+ "OX UK HS ILM6v1.1 Lung (May 2010) RankInv"
+ ]
+ ],
+ "Phenotypes": [
[
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
+ "HSPublish",
+ "HS Published Phenotypes"
+ ]
+ ]
+ },
+ "HS-CC": {
+ "Genotypes": [
[
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
+ "HS-CCGeno",
+ "HS-CC Genotypes"
+ ]
+ ],
+ "Phenotypes": [
[
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
+ "HS-CCPublish",
+ "HS-CC Published Phenotypes"
+ ]
+ ],
+ "Striatum": [
[
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
+ "OHSU_HS-CC_ILMStr_0211",
+ "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
+ ]
+ ]
+ },
+ "LXS": {
+ "Genotypes": [
[
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
+ "LXSGeno",
+ "LXS Genotypes"
+ ]
+ ],
+ "Hippocampus": [
[
"Illum_LXS_Hipp_loess0807",
"Hippocampus Illumina (Aug07) LOESS"
@@ -5426,65 +1652,25 @@
"Hippocampus Illumina (Aug07) RSN"
],
[
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
+ "Illum_LXS_Hipp_rsn_nb0807",
+ "Hippocampus Illumina (Aug07) RSN_NB"
],
[
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
+ "Hipp_Illumina_RankInv_0507",
+ "Hippocampus Illumina (May07) RankInv"
],
[
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
],
[
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
],
[
"Illum_LXS_Hipp_RSE_1008",
"Hippocampus Illumina RSE (Oct08) RankInv beta"
],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
[
"Illum_LXS_Hipp_NOE_1008",
"Hippocampus Illumina NOE (Oct08) RankInv beta"
@@ -5492,55 +1678,47 @@
[
"Illum_LXS_Hipp_RSS_1008",
"Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
]
],
- "Kidney": [
- [
- "MA_M2F_0706_R",
- "Mouse kidney M430v2 Female (Aug06) RMA"
- ],
- [
- "MA_M2M_0706_R",
- "Mouse kidney M430v2 Male (Aug06) RMA"
- ],
+ "Phenotypes": [
[
- "MA_M2_0806_R",
- "Mouse kidney M430v2 Sex Balanced (Aug06) RMA"
- ],
+ "LXSPublish",
+ "LXS Published Phenotypes"
+ ]
+ ],
+ "Prefrontal Cortex": [
[
- "MA_M2_0806_P",
- "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN"
+ "VCUEtOH_0806_R",
+ "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
],
[
- "MA_M2_0706_P",
- "Mouse Kidney M430v2 (Jul06) PDNN"
+ "VCUSal_0806_R",
+ "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
],
[
- "MA_M2_0706_R",
- "Mouse Kidney M430v2 (Jul06) RMA"
- ],
+ "VCUEt_vs_Sal_0806_R",
+ "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
+ ]
+ ]
+ },
+ "MDP": {
+ "Genotypes": [
[
- "KI_2A_0405_M",
- "MDC/CAS/ICL Kidney 230A (Apr05) MAS5"
- ],
+ "MDPGeno",
+ "MDP Genotypes"
+ ]
+ ],
+ "Hippocampus": [
[
- "KI_2A_0405_Rz",
- "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8"
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
],
[
- "KI_2A_0405_R",
- "MDC/CAS/ICL Kidney 230A (Apr05) RMA"
+ "HC_M2_0606_MDP",
+ "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
]
],
"Liver": [
- [
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
[
"JAX_CSB_L_0711",
"JAX Liver Affy M430 2.0 (Jul11) MDP"
@@ -5552,114 +1730,80 @@
[
"JAX_CSB_L_6C_0711",
"JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
+ ]
+ ],
+ "Phenotypes": [
[
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
+ "MDPPublish",
+ "Mouse Phenome Database"
+ ]
+ ]
+ },
+ "NZBXFVB-N2": {
+ "Genotypes": [
[
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
+ "NZBXFVB-N2Geno",
+ "NZBXFVB-N2 Genotypes"
+ ]
+ ],
+ "Mammary Tumors": [
[
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
+ "NCI_Mam_Tum_RMA_0409",
+ "NCI Mammary M430v2 (Apr09) RMA"
+ ]
+ ],
+ "Phenotypes": [
[
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
+ "NZBXFVB-N2Publish",
+ "NZBXFVB-N2 Published Phenotypes"
+ ]
+ ]
+ }
+ },
+ "rat": {
+ "HXBBXH": {
+ "Adrenal Gland": [
[
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
+ "HXB_Adrenal_1208",
+ "MDC/CAS/UCL Adrenal 230A (Dec08) RMA"
+ ]
+ ],
+ "Genotypes": [
[
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
+ "HXBBXHGeno",
+ "HXBBXH Genotypes"
+ ]
+ ],
+ "Heart": [
[
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
+ "HXB_Heart_1208",
+ "MDC/CAS/UCL Heart 230_V2 (Dec08) RMA"
+ ]
+ ],
+ "Hippocampus": [
[
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
+ "UT_HippRatEx_RMA_0709",
+ "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
+ ]
+ ],
+ "Kidney": [
[
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
+ "KI_2A_0405_M",
+ "MDC/CAS/ICL Kidney 230A (Apr05) MAS5"
],
[
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
+ "KI_2A_0405_Rz",
+ "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8"
],
[
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
+ "KI_2A_0405_R",
+ "MDC/CAS/ICL Kidney 230A (Apr05) RMA"
+ ]
+ ],
+ "Liver": [
[
"HXB_Liver_1208",
"MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
]
],
"Peritoneal Fat": [
@@ -5681,38 +1825,6 @@
},
"SRxSHRSPF2": {
"Eye": [
- [
- "Eye_AXBXA_1008_RankInv",
- "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
- ],
- [
- "Eye_M2_0908_R",
- "Eye M430v2 (Sep08) RMA"
- ],
- [
- "Eye_M2_0908_R_NB",
- "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_ND",
- "Eye M430v2 WT Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_WTWT",
- "Eye M430v2 WT WT (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_WT",
- "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_MT",
- "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
- ],
- [
- "BXD_GLA_0911",
- "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
- ],
[
"UIOWA_Eye_RMA_0906",
"UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index e7e260fe..d639ed07 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -23,6 +23,10 @@ from base import webqtlFormData
from pprint import pformat as pf
+#import logging
+#logging.basicConfig(filename="/tmp/gn_log", level=logging.INFO)
+#_log = logging.getLogger("correlation")
+
@app.route("/")
def index_page():
@@ -33,7 +37,7 @@ def index_page():
@app.route("/new")
def new_index_page():
print("Sending index_page")
-
+
return render_template("new_index_page.html")
@app.route("/data_sharing")
@@ -54,6 +58,7 @@ def data_sharing_page():
@app.route("/search")
def search_page():
+ print("in search_page")
if 'info_database' in request.args:
print("Going to sharing_info_page")
template_vars = sharing_info_page()
@@ -63,7 +68,9 @@ def search_page():
else:
return render_template("data_sharing.html", **template_vars.__dict__)
else:
+ print("calling search_results.SearchResultPage")
the_search = search_results.SearchResultPage(request.args)
+ print("done calling")
return render_template("search_result_page.html", **the_search.__dict__)
--
cgit v1.2.3
From a3e23950f25863697128eb3e40fd346c848e7ae5 Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Thu, 25 Oct 2012 15:48:14 -0500
Subject: Got the Make Default option working on the home page
---
wqflask/cfg/default_settings.py | 4 +
wqflask/cfg/zach_settings.py | 1 +
wqflask/maintenance/gen_select_dataset.py | 33 +-
.../static/new/javascript/dataset_menu_structure | 2904 --------------------
.../static/new/javascript/dataset_select_items.js | 773 ------
.../new/javascript/dataset_select_menu.coffee | 10 +-
.../static/new/javascript/dataset_select_menu.js | 12 +-
7 files changed, 46 insertions(+), 3691 deletions(-)
delete mode 100644 wqflask/wqflask/static/new/javascript/dataset_menu_structure
delete mode 100755 wqflask/wqflask/static/new/javascript/dataset_select_items.js
(limited to 'wqflask/maintenance')
diff --git a/wqflask/cfg/default_settings.py b/wqflask/cfg/default_settings.py
index 30ad51d1..1811ccfd 100644
--- a/wqflask/cfg/default_settings.py
+++ b/wqflask/cfg/default_settings.py
@@ -1 +1,5 @@
LOGFILE = """/tmp/flask_gn_log"""
+
+#This is needed because Flask turns key errors into a
+#400 bad request response with no exception/log
+TRAP_BAD_REQUEST_ERRORS = True
diff --git a/wqflask/cfg/zach_settings.py b/wqflask/cfg/zach_settings.py
index 30ad51d1..ed97f222 100644
--- a/wqflask/cfg/zach_settings.py
+++ b/wqflask/cfg/zach_settings.py
@@ -1 +1,2 @@
LOGFILE = """/tmp/flask_gn_log"""
+TRAP_BAD_REQUEST_ERRORS = True
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py
index 9224b884..4c544192 100644
--- a/wqflask/maintenance/gen_select_dataset.py
+++ b/wqflask/maintenance/gen_select_dataset.py
@@ -1,3 +1,10 @@
+"""Script that generates the data for the main dropdown menus on the home page
+
+Writes out data as /static/new/javascript/dataset_menu_structure.json
+It needs to be run manually when database has been changed.
+
+"""
+
# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
#
# This program is free software: you can redistribute it and/or modify it
@@ -13,16 +20,13 @@
# This program is available from Source Forge: at GeneNetwork Project
# (sourceforge.net/projects/genenetwork/).
#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+# Contact Drs. Robert W. Williams
+# at rwilliams@uthsc.edu
#
#
#
# This module is used by GeneNetwork project (www.genenetwork.org)
-# This script is to generate the data for the main menus on the home page
-# It needs to be run manually when database has been changed .
-
from __future__ import print_function, division
import sys
@@ -39,7 +43,8 @@ from base import webqtlConfig
# build MySql database connection
-Con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER,
+Con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,
+ host=webqtlConfig.MYSQL_SERVER,
user=webqtlConfig.DB_USER,
passwd=webqtlConfig.DB_PASSWD)
Cursor = Con.cursor()
@@ -82,6 +87,12 @@ def get_types(groups):
def build_types(species, group):
+ """Fetches tissues
+
+ Gets the tissues with data for this species/group
+ (all types except phenotype/genotype are tissues)
+
+ """
Cursor.execute("""select distinct Tissue.Name, concat(Tissue.Name, ' mRNA')
from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue, Species
where Species.Name = %s and Species.Id = InbredSet.SpeciesId and
@@ -101,12 +112,13 @@ def get_datasets(types):
datasets[species] = {}
for group, type_list in group_dict.iteritems():
datasets[species][group] = {}
- for type_name, type_full_name in type_list:
+ for type_name, _type_full_name in type_list:
datasets[species][group][type_name] = build_datasets(species, group, type_name)
return datasets
def build_datasets(species, group, type_name):
+ """Gets dataset names from database"""
dataset_text = dataset_value = None
if type_name == "Phenotypes":
dataset_value = "%sPublish" % group
@@ -135,6 +147,7 @@ def build_datasets(species, group, type_name):
def main():
+ """Generates and outputs (as json file) the data for the main dropdown menus on the home page"""
species = get_species()
groups = get_groups(species)
types = get_types(groups)
@@ -154,14 +167,16 @@ def main():
datasets=datasets,
)
- output_file = """../wqflask/static/new/javascript/dataset_menu_structure"""
+ output_file = """../wqflask/static/new/javascript/dataset_menu_structure.json"""
with open(output_file, 'w') as fh:
json.dump(data, fh, indent=" ", sort_keys=True)
print("\nWrote file to:", output_file)
-def test_it():
+
+def _test_it():
+ """Used for internal testing only"""
types = build_types("Mouse", "BXD")
print("build_types:", pf(types))
datasets = build_datasets("Mouse", "BXD", "Hippocampus")
diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure b/wqflask/wqflask/static/new/javascript/dataset_menu_structure
deleted file mode 100644
index 1b7e4090..00000000
--- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure
+++ /dev/null
@@ -1,2904 +0,0 @@
-{
- "datasets": {
- "All Species": {
- "All Groups": {
- "Phenotypes": [
- [
- "All Phenotypes",
- "All Phenotypes"
- ]
- ]
- }
- },
- "arabidopsis": {
- "BayXSha": {
- "Genotypes": [
- [
- "BayXShaGeno",
- "BayXSha Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "BayXShaPublish",
- "BayXSha Published Phenotypes"
- ]
- ]
- },
- "ColXBur": {
- "Genotypes": [
- [
- "ColXBurGeno",
- "ColXBur Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "ColXBurPublish",
- "ColXBur Published Phenotypes"
- ]
- ]
- },
- "ColXCvi": {
- "Genotypes": [
- [
- "ColXCviGeno",
- "ColXCvi Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "ColXCviPublish",
- "ColXCvi Published Phenotypes"
- ]
- ]
- }
- },
- "barley": {
- "QSM": {
- "Genotypes": [
- [
- "QSMGeno",
- "QSM Genotypes"
- ]
- ],
- "Leaf": [
- [
- "B1LI0809R",
- "Barley1 Leaf INOC TTKS (Aug09) RMA"
- ],
- [
- "B1LI0809M5",
- "Barley1 Leaf INOC TTKS (Aug09) MAS5"
- ],
- [
- "B1MI0809M5",
- "Barley1 Leaf MOCK TTKS (Aug09) MAS5"
- ],
- [
- "B1MI0809R",
- "Barley1 Leaf MOCK TTKS (Aug09) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "QSMPublish",
- "QSM Published Phenotypes"
- ]
- ]
- },
- "SXM": {
- "Embryo": [
- [
- "B139_K_1206_R",
- "Barley1 Embryo gcRMA SCRI (Dec06)"
- ],
- [
- "B139_K_1206_M",
- "Barley1 Embryo MAS 5.0 SCRI (Dec06)"
- ],
- [
- "B150_K_0406_R",
- "Barley1 Embryo0 gcRMA SCRI (Apr06)"
- ]
- ],
- "Genotypes": [
- [
- "SXMGeno",
- "SXM Genotypes"
- ]
- ],
- "Leaf": [
- [
- "B30_K_1206_M",
- "Barley1 Leaf MAS 5.0 SCRI (Dec06)"
- ],
- [
- "B30_K_1206_Rn",
- "Barley1 Leaf gcRMAn SCRI (Dec06)"
- ],
- [
- "B30_K_1206_R",
- "Barley1 Leaf gcRMA SCRI (Dec06)"
- ]
- ],
- "Phenotypes": [
- [
- "SXMPublish",
- "SXM Published Phenotypes"
- ]
- ]
- }
- },
- "drosophila": {
- "DGRP": {
- "Genotypes": [
- [
- "DGRPGeno",
- "DGRP Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "DGRPPublish",
- "DGRP Published Phenotypes"
- ]
- ],
- "Whole Body": [
- [
- "NCSU_DrosWB_LC_RMA_0111",
- "NCSU Drosophila Whole Body (Jan11) RMA"
- ]
- ]
- },
- "Oregon-R_x_2b3": {
- "Genotypes": [
- [
- "Oregon-R_x_2b3Geno",
- "Oregon-R_x_2b3 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "Oregon-R_x_2b3Publish",
- "Oregon-R_x_2b3 Published Phenotypes"
- ]
- ],
- "Whole Body": [
- [
- "UAB_DrosWB_LC_RMA_1009",
- "UAB Whole body D.m. mRNA control (Oct09) RMA"
- ],
- [
- "UAB_DrosWB_LE_RMA_1009",
- "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA"
- ]
- ]
- }
- },
- "human": {
- "AD-cases-controls": {
- "Brain": [
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ]
- ],
- "Genotypes": [
- [
- "AD-cases-controlsGeno",
- "AD-cases-controls Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "AD-cases-controlsPublish",
- "AD-cases-controls Published Phenotypes"
- ]
- ]
- },
- "AD-cases-controls-Myers": {
- "Brain": [
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ]
- ],
- "Genotypes": [
- [
- "AD-cases-controls-MyersGeno",
- "AD-cases-controls-Myers Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "AD-cases-controls-MyersPublish",
- "AD-cases-controls-Myers Published Phenotypes"
- ]
- ]
- },
- "CANDLE": {
- "Genotypes": [
- [
- "CANDLEGeno",
- "CANDLE Genotypes"
- ]
- ],
- "Newborn Cord Blood": [
- [
- "CANDLE_NB_0711",
- "CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT **"
- ]
- ],
- "Phenotypes": [
- [
- "CANDLEPublish",
- "CANDLE Published Phenotypes"
- ]
- ]
- },
- "CEPH-2004": {
- "Genotypes": [
- [
- "CEPH-2004Geno",
- "CEPH-2004 Genotypes"
- ]
- ],
- "Lymphoblast B-cell": [
- [
- "UT_CEPH_RankInv0909",
- "UTHSC CEPH B-cells Illumina (Sep09) RankInv"
- ],
- [
- "Human_1008",
- "Monks CEPH B-cells Agilent (Dec04) Log10Ratio"
- ]
- ],
- "Phenotypes": [
- [
- "CEPH-2004Publish",
- "CEPH-2004 Published Phenotypes"
- ]
- ]
- },
- "HB": {
- "Cerebellum": [
- [
- "HBTRC-MLC_0611",
- "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_N_0611",
- "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_AD_0611",
- "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_HD_0611",
- "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio"
- ]
- ],
- "Genotypes": [
- [
- "HBGeno",
- "HB Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "HBPublish",
- "HB Published Phenotypes"
- ]
- ],
- "Prefrontal Cortex": [
- [
- "HBTRC-MLPFC_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_N_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_AD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_HD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
- ]
- ],
- "Primary Visual Cortex": [
- [
- "HBTRC-MLVC_0611",
- "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_N_0611",
- "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_AD_0611",
- "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_HD_0611",
- "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio"
- ]
- ]
- },
- "HLC": {
- "Genotypes": [
- [
- "HLCGeno",
- "HLC Genotypes"
- ]
- ],
- "Liver": [
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
- ]
- ],
- "Phenotypes": [
- [
- "HLCPublish",
- "HLC Published Phenotypes"
- ]
- ]
- },
- "HSB": {
- "Amygdala": [
- [
- "KIN_YSM_AMY_0711",
- "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Caudal Ganglionic Eminence": [
- [
- "KIN_YSM_CGE_0711",
- "KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Cerebellar Cortex": [
- [
- "KIN_YSM_CBC_0711",
- "KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Diencephalon": [
- [
- "KIN_YSM_DIE_0711",
- "KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Dorsal Thalamus": [
- [
- "KIN_YSM_DTH_0711",
- "KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Dorsolateral Prefrontal Cortex": [
- [
- "KIN_YSM_DFC_0711",
- "KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Frontal Cerebral Wall": [
- [
- "KIN_YSM_FC_0711",
- "KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Genotypes": [
- [
- "HSBGeno",
- "HSB Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Inferior Temporal Cortex": [
- [
- "KIN_YSM_ITC_0711",
- "KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Lateral Ganglionic Eminence": [
- [
- "KIN_YSM_LGE_0711",
- "KIN/YSM Human LGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Medial Ganglionic Eminence": [
- [
- "KIN_YSM_MGE_0711",
- "KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Medial Prefrontal Cortex": [
- [
- "KIN_YSM_MFC_0711",
- "KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Mediodorsal Nucleus of Thalamus": [
- [
- "KIN_YSM_MD_0711",
- "KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Occipital Cerebral Wall": [
- [
- "KIN_YSM_OC_0711",
- "KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Orbital Prefrontal Cortex": [
- [
- "KIN_YSM_OFC_0711",
- "KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Parietal Cerebral Wall": [
- [
- "KIN_YSM_PC_0711",
- "KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Phenotypes": [
- [
- "HSBPublish",
- "HSB Published Phenotypes"
- ]
- ],
- "Posterior Inferior Parietal Cortex": [
- [
- "KIN_YSM_IPC_0711",
- "KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Posterior Superior Temporal Cortex": [
- [
- "KIN_YSM_STC_0711",
- "KIN/YSM Human STC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Primary Auditory (A1) Cortex": [
- [
- "KIN_YSM_A1C_0711",
- "KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Primary Motor (M1) Cortex": [
- [
- "KIN_YSM_M1C_0711",
- "KIN/YSM Human M1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Primary Somatosensory (S1) Cortex": [
- [
- "KIN_YSM_S1C_0711",
- "KIN/YSM Human S1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Primary Visual Cortex": [
- [
- "KIN_YSM_V1C_0711",
- "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Striatum": [
- [
- "KIN_YSM_STR_0711",
- "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Temporal Cerebral Wall": [
- [
- "KIN_YSM_TC_0711",
- "KIN/YSM Human TC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Upper (Rostral) Rhombic Lip": [
- [
- "KIN_YSM_URL_0711",
- "KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Ventral Forebrain": [
- [
- "KIN_YSM_VF_0711",
- "KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Ventrolateral Prefrontal Cortex": [
- [
- "KIN_YSM_VFC_0711",
- "KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ]
- }
- },
- "macaque monkey": {
- "Macaca-fasicularis": {
- "Amygdala": [
- [
- "INIA_MacFas_AMGc_RMA_0110",
- "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_AMGe_RMA_0110",
- "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
- ]
- ],
- "Brain": [
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ]
- ],
- "Genotypes": [
- [
- "Macaca-fasicularisGeno",
- "Macaca-fasicularis Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ]
- ],
- "Nucleus Accumbens": [
- [
- "INIA_MacFas_Ac_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_Ae_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **"
- ]
- ],
- "Phenotypes": [
- [
- "Macaca-fasicularisPublish",
- "Macaca-fasicularis Published Phenotypes"
- ]
- ],
- "Prefrontal Cortex": [
- [
- "INIA_MacFas_Pf_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_PfE_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
- ]
- ]
- }
- },
- "mouse": {
- "AKXD": {
- "Genotypes": [
- [
- "AKXDGeno",
- "AKXD Genotypes"
- ]
- ],
- "Mammary Tumors": [
- [
- "NCI_Agil_Mam_Tum_RMA_0409",
- "NCI Mammary LMT miRNA v2 (Apr09) RMA"
- ],
- [
- "MA_M_0704_R",
- "NCI Mammary mRNA M430 (July04) RMA"
- ],
- [
- "MA_M_0704_M",
- "NCI Mammary mRNA M430 (July04) MAS5"
- ]
- ],
- "Phenotypes": [
- [
- "AKXDPublish",
- "AKXD Published Phenotypes"
- ]
- ]
- },
- "AXBXA": {
- "Eye": [
- [
- "Eye_AXBXA_1008_RankInv",
- "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
- ]
- ],
- "Genotypes": [
- [
- "AXBXAGeno",
- "AXBXA Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "AXBXAPublish",
- "AXBXA Published Phenotypes"
- ]
- ]
- },
- "B6BTBRF2": {
- "Genotypes": [
- [
- "B6BTBRF2Geno",
- "B6BTBRF2 Genotypes"
- ]
- ],
- "Liver": [
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ]
- ],
- "Phenotypes": [
- [
- "B6BTBRF2Publish",
- "B6BTBRF2 Published Phenotypes"
- ]
- ]
- },
- "B6D2F2": {
- "Brain": [
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ]
- ],
- "Genotypes": [
- [
- "B6D2F2Geno",
- "B6D2F2 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "B6D2F2Publish",
- "B6D2F2 Published Phenotypes"
- ]
- ]
- },
- "BDF2-1999": {
- "Genotypes": [
- [
- "BDF2-1999Geno",
- "BDF2-1999 Genotypes"
- ]
- ],
- "Liver": [
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ]
- ],
- "Phenotypes": [
- [
- "BDF2-1999Publish",
- "BDF2-1999 Published Phenotypes"
- ]
- ]
- },
- "BDF2-2005": {
- "Genotypes": [
- [
- "BDF2-2005Geno",
- "BDF2-2005 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "BDF2-2005Publish",
- "BDF2-2005 Published Phenotypes"
- ]
- ],
- "Striatum": [
- [
- "SA_M2_0905_R",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
- ],
- [
- "SA_M2_0905_M",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
- ],
- [
- "SA_M2_0905_P",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
- ]
- ]
- },
- "BHF2": {
- "Adipose": [
- [
- "UCLA_BHF2_ADIPOSE_MALE",
- "UCLA BHF2 Adipose Male mlratio"
- ],
- [
- "UCLA_BHF2_ADIPOSE_FEMALE",
- "UCLA BHF2 Adipose Female mlratio"
- ],
- [
- "UCLA_BHF2_ADIPOSE_0605",
- "UCLA BHF2 Adipose (June05) mlratio"
- ]
- ],
- "Brain": [
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ]
- ],
- "Genotypes": [
- [
- "BHF2Geno",
- "BHF2 Genotypes"
- ]
- ],
- "Liver": [
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ]
- ],
- "Muscle": [
- [
- "UCLA_BHF2_MUSCLE_MALE",
- "UCLA BHF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_FEMALE",
- "UCLA BHF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_0605",
- "UCLA BHF2 Muscle (June05) mlratio **"
- ]
- ],
- "Phenotypes": [
- [
- "BHF2Publish",
- "BHF2 Published Phenotypes"
- ]
- ]
- },
- "BHHBF2": {
- "Adipose": [
- [
- "UCLA_BHHBF2_ADIPOSE_MALE",
- "UCLA BHHBF2 Adipose Male Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_FEMALE",
- "UCLA BHHBF2 Adipose Female Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_2005",
- "UCLA BHHBF2 Adipose (2005) mlratio **"
- ]
- ],
- "Brain": [
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ]
- ],
- "Genotypes": [
- [
- "BHHBF2Geno",
- "BHHBF2 Genotypes"
- ]
- ],
- "Liver": [
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ]
- ],
- "Muscle": [
- [
- "UCLA_BHHBF2_MUSCLE_MALE",
- "UCLA BHHBF2 Muscle Male Only"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_FEMALE",
- "UCLA BHHBF2 Muscle Female Only"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_2005",
- "UCLA BHHBF2 Muscle (2005) mlratio **"
- ]
- ],
- "Phenotypes": [
- [
- "BHHBF2Publish",
- "BHHBF2 Published Phenotypes"
- ]
- ]
- },
- "BXD": {
- "Amygdala": [
- [
- "INIA_AmgCoh_0311",
- "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_M_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
- ],
- [
- "INIA_Amg_BLA_RMA_F_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
- ]
- ],
- "Brain": [
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
- ]
- ],
- "Cartilage": [
- [
- "UCLA_BXDBXH_CARTILAGE_V2",
- "UCLA BXD and BXH Cartilage v2"
- ],
- [
- "UCLA_BXDBXH_CARTILAGE",
- "UCLA BXD and BXH Cartilage"
- ],
- [
- "UCLA_BXD_CARTILAGE",
- "UCLA BXD Cartilage"
- ]
- ],
- "Cerebellum": [
- [
- "CB_M_1004_M",
- "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
- ],
- [
- "CB_M_1004_R",
- "SJUT Cerebellum mRNA M430 (Oct04) RMA"
- ],
- [
- "CB_M_1004_P",
- "SJUT Cerebellum mRNA M430 (Oct04) PDNN"
- ],
- [
- "CB_M_1003_M",
- "SJUT Cerebellum mRNA M430 (Oct03) MAS5"
- ]
- ],
- "Eye": [
- [
- "Eye_M2_0908_R",
- "Eye M430v2 (Sep08) RMA"
- ],
- [
- "Eye_M2_0908_R_NB",
- "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_ND",
- "Eye M430v2 WT Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_WT",
- "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_WTWT",
- "Eye M430v2 WT WT (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_MT",
- "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
- ],
- [
- "BXD_GLA_0911",
- "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
- ]
- ],
- "Genotypes": [
- [
- "BXDGeno",
- "BXD Genotypes"
- ]
- ],
- "Hematopoietic Cells": [
- [
- "UMCG_0907_HemaStem_ori",
- "UMCG Stem Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "UMCG_0907_HemaStem",
- "UMCG Stem Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "UMCG_0907_Pro_ori",
- "UMCG Progenitor Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "UMCG_0907_Pro",
- "UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "UMCG_0907_Eryth_ori",
- "UMCG Erythroid Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "UMCG_0907_Eryth",
- "UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "UMCG_0907_Myeloid_ori",
- "UMCG Myeloid Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "UMCG_0907_Myeloid",
- "UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "HC_U_0304_R",
- "GNF Stem Cells U74Av2 (Mar04) RMA"
- ]
- ],
- "Hippocampus": [
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ]
- ],
- "Hypothalamus": [
- [
- "INIA_Hyp_RMA_1110",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)"
- ],
- [
- "INIA_Hyp_M_RMA_1110",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male"
- ],
- [
- "INIA_Hyp_F_RMA_1110",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female"
- ]
- ],
- "Kidney": [
- [
- "MA_M2F_0706_R",
- "Mouse kidney M430v2 Female (Aug06) RMA"
- ],
- [
- "MA_M2M_0706_R",
- "Mouse kidney M430v2 Male (Aug06) RMA"
- ],
- [
- "MA_M2_0806_R",
- "Mouse kidney M430v2 Sex Balanced (Aug06) RMA"
- ],
- [
- "MA_M2_0806_P",
- "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN"
- ],
- [
- "MA_M2_0706_P",
- "Mouse Kidney M430v2 (Jul06) PDNN"
- ],
- [
- "MA_M2_0706_R",
- "Mouse Kidney M430v2 (Jul06) RMA"
- ]
- ],
- "Leucocytes": [
- [
- "Illum_BXD_PBL_1108",
- "UWA Illumina PBL (Nov08) RSN **"
- ]
- ],
- "Liver": [
- [
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ]
- ],
- "Lung": [
- [
- "HZI_0408_R",
- "HZI Lung M430v2 (Apr08) RMA"
- ],
- [
- "HZI_0408_M",
- "HZI Lung M430v2 (Apr08) MAS5"
- ]
- ],
- "Midbrain": [
- [
- "VUBXDMouseMidBrainQ0212",
- "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (Feb12) Quantile"
- ]
- ],
- "Muscle": [
- [
- "EPFLMouseMuscleRMA1211",
- "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleHFDRMA1211",
- "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleCDRMA1211",
- "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ]
- ],
- "Neocortex": [
- [
- "DevNeocortex_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "DevNeocortex_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "HQFNeoc_1210v2_RankInv",
- "HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv"
- ],
- [
- "HQFNeoc_1210_RankInv",
- "HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv"
- ],
- [
- "HQFNeoc_0208_RankInv",
- "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv"
- ],
- [
- "DevNeocortex_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv **"
- ],
- [
- "DevNeocortex_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv **"
- ]
- ],
- "Nucleus Accumbens": [
- [
- "VCUSalo_1007_R",
- "VCU BXD NA Sal M430 2.0 (Oct07) RMA"
- ],
- [
- "VCUEtOH_1007_R",
- "VCU BXD NA EtOH M430 2.0 (Oct07) RMA **"
- ],
- [
- "VCUSal_1007_R",
- "VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **"
- ]
- ],
- "Phenotypes": [
- [
- "BXDPublish",
- "BXD Published Phenotypes"
- ]
- ],
- "Prefrontal Cortex": [
- [
- "VCUEtOH_1206_R",
- "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
- ],
- [
- "VCUSal_1206_R",
- "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
- ],
- [
- "VCUSal_1006_R",
- "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
- ],
- [
- "VCU_PF_Air_0111_R",
- "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_Et_0111_R",
- "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_AvE_0111_Ss",
- "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
- ]
- ],
- "Retina": [
- [
- "Illum_Retina_BXD_RankInv0410",
- "HEI Retina Illumina V6.2 (April 2010) RankInv"
- ],
- [
- "B6D2ONCILM_0412",
- "B6D2 ONC Illumina v6.1 (Apr12) RankInv **"
- ],
- [
- "ONCRetILM6_0412",
- "ONC Retina Illumina V6.2 (Apr12) RankInv **"
- ],
- [
- "HEIONCvsCRetILM6_0911",
- "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **"
- ],
- [
- "G2HEIONCRetILM6_0911",
- "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
- ],
- [
- "HEIONCRetILM6_0911",
- "HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
- ],
- [
- "ILM_Retina_BXD_F_RankInv1210",
- "HEI Retina Females Illumina V6.2 (Dec10) RankInv **"
- ],
- [
- "ILM_Retina_BXD_M_RankInv1210",
- "HEI Retina Males Illumina V6.2 (Dec10) RankInv **"
- ],
- [
- "ILM_Retina_BXD_FM_RankInv1210",
- "HEI Retina F-M Illumina V6.2 (Dec10) RankInv **"
- ],
- [
- "G2NEI_ILM_Retina_BXD_RI0410",
- "G2NEI Retina Illumina V6.2 (April 2010) RankInv **"
- ]
- ],
- "Spleen": [
- [
- "UTHSC_SPL_RMA_1210",
- "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
- ],
- [
- "UTHSC_SPL_RMA_1010",
- "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA"
- ],
- [
- "IoP_SPL_RMA_0509",
- "IoP Affy MOE 430v2 Spleen (May09) RMA"
- ],
- [
- "Illum_BXD_Spl_1108",
- "UWA Illumina Spleen (Nov08) RSN **"
- ],
- [
- "UTK_BXDSpl_VST_0110",
- "UTK Spleen ILM6.1 (Jan10) VST"
- ]
- ],
- "Striatum": [
- [
- "DevStriatum_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "UTHSC_Striatum_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
- ],
- [
- "UTHSC_Str_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
- ],
- [
- "UTHSC_1107_RankInv",
- "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
- ],
- [
- "SA_M2_0405_MC",
- "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
- ],
- [
- "SA_M2_0405_RC",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
- ],
- [
- "SA_M2_0405_PC",
- "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
- ],
- [
- "SA_M2_0405_SS",
- "HBP Rosen Striatum M430V2 (Apr05) SScore"
- ],
- [
- "SA_M2_0405_RR",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
- ],
- [
- "Striatum_Exon_0209",
- "HQF Striatum Exon (Feb09) RMA"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
- ]
- ],
- "T Cell (helper)": [
- [
- "RTHC_0211_R",
- "HZI Thelp M430v2 (Feb11) RMA"
- ]
- ],
- "T Cell (regulatory)": [
- [
- "RTC_1106_R",
- "HZI Treg M430v2 (Feb11) RMA"
- ]
- ],
- "Thymus": [
- [
- "Illum_BXD_Thy_1108",
- "UWA Illumina Thymus (Nov08) RSN **"
- ]
- ],
- "Ventral Tegmental Area": [
- [
- "VCUEtOH_0609_R",
- "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **"
- ],
- [
- "VCUSal_0609_R",
- "VCU BXD VTA Sal M430 2.0 (Jun09) RMA **"
- ],
- [
- "VCUEtvsSal_0609_R",
- "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **"
- ]
- ]
- },
- "BXH": {
- "Cartilage": [
- [
- "UCLA_BXHBXD_CARTILAGE_V2",
- "UCLA BXH and BXD Cartilage v2"
- ],
- [
- "UCLA_BXHBXD_CARTILAGE",
- "UCLA BXH and BXD Cartilage"
- ],
- [
- "UCLA_BXH_CARTILAGE",
- "UCLA BXH Cartilage"
- ]
- ],
- "Genotypes": [
- [
- "BXHGeno",
- "BXH Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "BXHPublish",
- "BXH Published Phenotypes"
- ]
- ]
- },
- "CTB6F2": {
- "Adipose": [
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
- "UCLA CTB6B6CTF2 Adipose Male mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
- "UCLA CTB6B6CTF2 Adipose Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_2005",
- "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
- ]
- ],
- "Brain": [
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ]
- ],
- "Genotypes": [
- [
- "CTB6F2Geno",
- "CTB6F2 Genotypes"
- ]
- ],
- "Liver": [
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ]
- ],
- "Muscle": [
- [
- "UCLA_CTB6B6CTF2_MUSCLE_MALE",
- "UCLA CTB6B6CTF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
- "UCLA CTB6B6CTF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_2005",
- "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
- ]
- ],
- "Phenotypes": [
- [
- "CTB6F2Publish",
- "CTB6F2 Published Phenotypes"
- ]
- ]
- },
- "CXB": {
- "Genotypes": [
- [
- "CXBGeno",
- "CXB Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ]
- ],
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- [
- "CXBPublish",
- "CXB Published Phenotypes"
- ]
- ],
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- [
- "STSPL_1107_R",
- "Stuart Spleen M430v2 (Nov07) RMA"
- ]
- ]
- },
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- [
- "HSGeno",
- "HS Genotypes"
- ]
- ],
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- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ]
- ],
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- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ]
- ],
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- [
- "OXUKHS_ILMLung_RI0510",
- "OX UK HS ILM6v1.1 Lung (May 2010) RankInv"
- ]
- ],
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- [
- "HSPublish",
- "HS Published Phenotypes"
- ]
- ]
- },
- "HS-CC": {
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- [
- "HS-CCGeno",
- "HS-CC Genotypes"
- ]
- ],
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- [
- "HS-CCPublish",
- "HS-CC Published Phenotypes"
- ]
- ],
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- [
- "OHSU_HS-CC_ILMStr_0211",
- "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
- ]
- ]
- },
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- [
- "LXSGeno",
- "LXS Genotypes"
- ]
- ],
- "Hippocampus": [
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- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
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- "Hippocampus Illumina (Aug07) RSN_NB"
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- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
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- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ]
- ],
- "Phenotypes": [
- [
- "LXSPublish",
- "LXS Published Phenotypes"
- ]
- ],
- "Prefrontal Cortex": [
- [
- "VCUEtOH_0806_R",
- "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
- ],
- [
- "VCUSal_0806_R",
- "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
- ],
- [
- "VCUEt_vs_Sal_0806_R",
- "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
- ]
- ]
- },
- "MDP": {
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- [
- "MDPGeno",
- "MDP Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ]
- ],
- "Liver": [
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ]
- ],
- "Phenotypes": [
- [
- "MDPPublish",
- "Mouse Phenome Database"
- ]
- ]
- },
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- [
- "NZBXFVB-N2Geno",
- "NZBXFVB-N2 Genotypes"
- ]
- ],
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- [
- "NCI_Mam_Tum_RMA_0409",
- "NCI Mammary M430v2 (Apr09) RMA"
- ]
- ],
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- [
- "NZBXFVB-N2Publish",
- "NZBXFVB-N2 Published Phenotypes"
- ]
- ]
- }
- },
- "rat": {
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- [
- "HXB_Adrenal_1208",
- "MDC/CAS/UCL Adrenal 230A (Dec08) RMA"
- ]
- ],
- "Genotypes": [
- [
- "HXBBXHGeno",
- "HXBBXH Genotypes"
- ]
- ],
- "Heart": [
- [
- "HXB_Heart_1208",
- "MDC/CAS/UCL Heart 230_V2 (Dec08) RMA"
- ]
- ],
- "Hippocampus": [
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ]
- ],
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- [
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- "MDC/CAS/ICL Kidney 230A (Apr05) MAS5"
- ],
- [
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- "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8"
- ],
- [
- "KI_2A_0405_R",
- "MDC/CAS/ICL Kidney 230A (Apr05) RMA"
- ]
- ],
- "Liver": [
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ]
- ],
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- [
- "FT_2A_0805_M",
- "MDC/CAS/ICL Peritoneal Fat 230A (Aug05) MAS5"
- ],
- [
- "FT_2A_0605_Rz",
- "MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8"
- ]
- ],
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- [
- "HXBBXHPublish",
- "HXBBXH Published Phenotypes"
- ]
- ]
- },
- "SRxSHRSPF2": {
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- [
- "UIOWA_Eye_RMA_0906",
- "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
- ]
- ],
- "Genotypes": [
- [
- "SRxSHRSPF2Geno",
- "SRxSHRSPF2 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "SRxSHRSPF2Publish",
- "SRxSHRSPF2 Published Phenotypes"
- ]
- ]
- }
- },
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- [
- "J12XJ58F2Geno",
- "J12XJ58F2 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "J12XJ58F2Publish",
- "J12XJ58F2 Published Phenotypes"
- ]
- ]
- }
- },
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- [
- "LXPGeno",
- "LXP Genotypes"
- ]
- ],
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- [
- "LXPPublish",
- "LXP Published Phenotypes"
- ]
- ]
- }
- }
- },
- "groups": {
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- [
- "All Groups",
- "All Groups"
- ]
- ],
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- "BayXSha",
- "BayXSha"
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- [
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- "ColXBur"
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- [
- "ColXCvi",
- "ColXCvi"
- ]
- ],
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- "QSM"
- ],
- [
- "SXM",
- "SXM"
- ]
- ],
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- [
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- "Drosophila Genetic Reference Panel"
- ],
- [
- "Oregon-R_x_2b3",
- "Oregon-R x 2b3"
- ]
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- "AD Cases & Controls (Liang)"
- ],
- [
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- "AD Cases & Controls (Myers)"
- ],
- [
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- "CANDLE"
- ],
- [
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- "CEPH Families"
- ],
- [
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- "Harvard Brain Tissue Resource Center"
- ],
- [
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- "Human Liver Cohort"
- ],
- [
- "HSB",
- "KIN/YSM"
- ]
- ],
- "macaque monkey": [
- [
- "Macaca-fasicularis",
- "Macaca fasicularis (Cynomolgus monkey)"
- ]
- ],
- "mouse": [
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- "AKXD",
- "AKXD"
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- [
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- "AXB/BXA"
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- [
- "B6BTBRF2",
- "B6BTBRF2"
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- [
- "B6D2F2",
- "B6D2F2"
- ],
- [
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- "BDF2 UCLA"
- ],
- [
- "BDF2-2005",
- "BDF2-2005"
- ],
- [
- "BHF2",
- "BHF2 (Apoe Null) UCLA"
- ],
- [
- "BHHBF2",
- "BH/HB F2 UCLA"
- ],
- [
- "BXD",
- "BXD"
- ],
- [
- "BXH",
- "BXH"
- ],
- [
- "CTB6F2",
- "CastB6/B6Cast F2 UCLA"
- ],
- [
- "CXB",
- "CXB"
- ],
- [
- "HS",
- "Heterogeneous Stock"
- ],
- [
- "HS-CC",
- "Heterogeneous Stock Collaborative Cross"
- ],
- [
- "LXS",
- "LXS"
- ],
- [
- "MDP",
- "Mouse Diversity Panel"
- ],
- [
- "NZBXFVB-N2",
- "NZB/FVB N2 NCI"
- ]
- ],
- "rat": [
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- "HXBBXH",
- "HXB/BXH"
- ],
- [
- "SRxSHRSPF2",
- "UIOWA SRxSHRSP F2"
- ]
- ],
- "soybean": [
- [
- "J12XJ58F2",
- "J12XJ58F2"
- ]
- ],
- "tomato": [
- [
- "LXP",
- "LXP"
- ]
- ]
- },
- "species": [
- [
- "human",
- "Human"
- ],
- [
- "macaque monkey",
- "Macaque monkey"
- ],
- [
- "mouse",
- "Mouse"
- ],
- [
- "rat",
- "Rat"
- ],
- [
- "drosophila",
- "Drosophila"
- ],
- [
- "arabidopsis",
- "Arabidopsis thaliana"
- ],
- [
- "barley",
- "Barley"
- ],
- [
- "soybean",
- "Soybean"
- ],
- [
- "tomato",
- "Tomato"
- ],
- [
- "All Species",
- "All Species"
- ]
- ],
- "types": {
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- [
- "Phenotypes",
- "Phenotypes"
- ]
- ]
- },
- "arabidopsis": {
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- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ],
- "ColXBur": [
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- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ],
- "ColXCvi": [
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- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ]
- },
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- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Leaf",
- "Leaf mRNA"
- ]
- ],
- "SXM": [
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- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Embryo",
- "Embryo mRNA"
- ],
- [
- "Leaf",
- "Leaf mRNA"
- ]
- ]
- },
- "drosophila": {
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- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Whole Body",
- "Whole Body mRNA"
- ]
- ],
- "Oregon-R_x_2b3": [
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- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Whole Body",
- "Whole Body mRNA"
- ]
- ]
- },
- "human": {
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- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Brain",
- "Brain mRNA"
- ]
- ],
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- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Brain",
- "Brain mRNA"
- ]
- ],
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- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Newborn Cord Blood",
- "Newborn Cord Blood mRNA"
- ]
- ],
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- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Lymphoblast B-cell",
- "Lymphoblast B-cell mRNA"
- ]
- ],
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- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Cerebellum",
- "Cerebellum mRNA"
- ],
- [
- "Prefrontal Cortex",
- "Prefrontal Cortex mRNA"
- ],
- [
- "Primary Visual Cortex",
- "Primary Visual Cortex mRNA"
- ]
- ],
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- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Liver",
- "Liver mRNA"
- ]
- ],
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- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Amygdala",
- "Amygdala mRNA"
- ],
- [
- "Caudal Ganglionic Eminence",
- "Caudal Ganglionic Eminence mRNA"
- ],
- [
- "Cerebellar Cortex",
- "Cerebellar Cortex mRNA"
- ],
- [
- "Diencephalon",
- "Diencephalon mRNA"
- ],
- [
- "Dorsal Thalamus",
- "Dorsal Thalamus mRNA"
- ],
- [
- "Dorsolateral Prefrontal Cortex",
- "Dorsolateral Prefrontal Cortex mRNA"
- ],
- [
- "Frontal Cerebral Wall",
- "Frontal Cerebral Wall mRNA"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Inferior Temporal Cortex",
- "Inferior Temporal Cortex mRNA"
- ],
- [
- "Lateral Ganglionic Eminence",
- "Lateral Ganglionic Eminence mRNA"
- ],
- [
- "Medial Ganglionic Eminence",
- "Medial Ganglionic Eminence mRNA"
- ],
- [
- "Medial Prefrontal Cortex",
- "Medial Prefrontal Cortex mRNA"
- ],
- [
- "Mediodorsal Nucleus of Thalamus",
- "Mediodorsal Nucleus of Thalamus mRNA"
- ],
- [
- "Occipital Cerebral Wall",
- "Occipital Cerebral Wall mRNA"
- ],
- [
- "Orbital Prefrontal Cortex",
- "Orbital Prefrontal Cortex mRNA"
- ],
- [
- "Parietal Cerebral Wall",
- "Parietal Cerebral Wall mRNA"
- ],
- [
- "Posterior Inferior Parietal Cortex",
- "Posterior Inferior Parietal Cortex mRNA"
- ],
- [
- "Posterior Superior Temporal Cortex",
- "Posterior Superior Temporal Cortex mRNA"
- ],
- [
- "Primary Auditory (A1) Cortex",
- "Primary Auditory (A1) Cortex mRNA"
- ],
- [
- "Primary Motor (M1) Cortex",
- "Primary Motor (M1) Cortex mRNA"
- ],
- [
- "Primary Somatosensory (S1) Cortex",
- "Primary Somatosensory (S1) Cortex mRNA"
- ],
- [
- "Primary Visual Cortex",
- "Primary Visual Cortex mRNA"
- ],
- [
- "Striatum",
- "Striatum mRNA"
- ],
- [
- "Temporal Cerebral Wall",
- "Temporal Cerebral Wall mRNA"
- ],
- [
- "Upper (Rostral) Rhombic Lip",
- "Upper (Rostral) Rhombic Lip mRNA"
- ],
- [
- "Ventral Forebrain",
- "Ventral Forebrain mRNA"
- ],
- [
- "Ventrolateral Prefrontal Cortex",
- "Ventrolateral Prefrontal Cortex mRNA"
- ]
- ]
- },
- "macaque monkey": {
- "Macaca-fasicularis": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Amygdala",
- "Amygdala mRNA"
- ],
- [
- "Brain",
- "Brain mRNA"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Nucleus Accumbens",
- "Nucleus Accumbens mRNA"
- ],
- [
- "Prefrontal Cortex",
- "Prefrontal Cortex mRNA"
- ]
- ]
- },
- "mouse": {
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- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Mammary Tumors",
- "Mammary Tumors mRNA"
- ]
- ],
- "AXBXA": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Eye",
- "Eye mRNA"
- ]
- ],
- "B6BTBRF2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Liver",
- "Liver mRNA"
- ]
- ],
- "B6D2F2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Brain",
- "Brain mRNA"
- ]
- ],
- "BDF2-1999": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Liver",
- "Liver mRNA"
- ]
- ],
- "BDF2-2005": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Striatum",
- "Striatum mRNA"
- ]
- ],
- "BHF2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adipose",
- "Adipose mRNA"
- ],
- [
- "Brain",
- "Brain mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ],
- [
- "Muscle",
- "Muscle mRNA"
- ]
- ],
- "BHHBF2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adipose",
- "Adipose mRNA"
- ],
- [
- "Brain",
- "Brain mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ],
- [
- "Muscle",
- "Muscle mRNA"
- ]
- ],
- "BXD": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Amygdala",
- "Amygdala mRNA"
- ],
- [
- "Brain",
- "Brain mRNA"
- ],
- [
- "Cartilage",
- "Cartilage mRNA"
- ],
- [
- "Cerebellum",
- "Cerebellum mRNA"
- ],
- [
- "Eye",
- "Eye mRNA"
- ],
- [
- "Hematopoietic Cells",
- "Hematopoietic Cells mRNA"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Hypothalamus",
- "Hypothalamus mRNA"
- ],
- [
- "Kidney",
- "Kidney mRNA"
- ],
- [
- "Leucocytes",
- "Leucocytes mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ],
- [
- "Lung",
- "Lung mRNA"
- ],
- [
- "Midbrain",
- "Midbrain mRNA"
- ],
- [
- "Muscle",
- "Muscle mRNA"
- ],
- [
- "Neocortex",
- "Neocortex mRNA"
- ],
- [
- "Nucleus Accumbens",
- "Nucleus Accumbens mRNA"
- ],
- [
- "Prefrontal Cortex",
- "Prefrontal Cortex mRNA"
- ],
- [
- "Retina",
- "Retina mRNA"
- ],
- [
- "Spleen",
- "Spleen mRNA"
- ],
- [
- "Striatum",
- "Striatum mRNA"
- ],
- [
- "T Cell (helper)",
- "T Cell (helper) mRNA"
- ],
- [
- "T Cell (regulatory)",
- "T Cell (regulatory) mRNA"
- ],
- [
- "Thymus",
- "Thymus mRNA"
- ],
- [
- "Ventral Tegmental Area",
- "Ventral Tegmental Area mRNA"
- ]
- ],
- "BXH": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Cartilage",
- "Cartilage mRNA"
- ]
- ],
- "CTB6F2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adipose",
- "Adipose mRNA"
- ],
- [
- "Brain",
- "Brain mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ],
- [
- "Muscle",
- "Muscle mRNA"
- ]
- ],
- "CXB": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Spleen",
- "Spleen mRNA"
- ]
- ],
- "HS": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ],
- [
- "Lung",
- "Lung mRNA"
- ]
- ],
- "HS-CC": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Striatum",
- "Striatum mRNA"
- ]
- ],
- "LXS": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Prefrontal Cortex",
- "Prefrontal Cortex mRNA"
- ]
- ],
- "MDP": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ]
- ],
- "NZBXFVB-N2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Mammary Tumors",
- "Mammary Tumors mRNA"
- ]
- ]
- },
- "rat": {
- "HXBBXH": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adrenal Gland",
- "Adrenal Gland mRNA"
- ],
- [
- "Heart",
- "Heart mRNA"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Kidney",
- "Kidney mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ],
- [
- "Peritoneal Fat",
- "Peritoneal Fat mRNA"
- ]
- ],
- "SRxSHRSPF2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Eye",
- "Eye mRNA"
- ]
- ]
- },
- "soybean": {
- "J12XJ58F2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ]
- },
- "tomato": {
- "LXP": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ]
- }
- }
-}
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_items.js b/wqflask/wqflask/static/new/javascript/dataset_select_items.js
deleted file mode 100755
index 33ff34cb..00000000
--- a/wqflask/wqflask/static/new/javascript/dataset_select_items.js
+++ /dev/null
@@ -1,773 +0,0 @@
-window.sArr = [
-{txt:'',val:''},
-{txt:'Human',val:'human'},
-{txt:'Macaque monkey',val:'macaque monkey'},
-{txt:'Mouse',val:'mouse'},
-{txt:'Rat',val:'rat'},
-{txt:'Drosophila',val:'drosophila'},
-{txt:'Arabidopsis thaliana',val:'arabidopsis'},
-{txt:'Barley',val:'barley'},
-{txt:'Soybean',val:'soybean'},
-{txt:'Tomato',val:'tomato'},
-{txt:'All Species',val:'All Species'}];
-
-window.gArr = [
-{txt:'',val:''},
-{txt:'AD Cases & Controls (Liang)',val:'AD-cases-controls'},
-{txt:'AD Cases & Controls (Myers)',val:'AD-cases-controls-Myers'},
-{txt:'AKXD',val:'AKXD'},
-{txt:'AXB/BXA',val:'AXBXA'},
-{txt:'B6BTBRF2',val:'B6BTBRF2'},
-{txt:'B6D2F2',val:'B6D2F2'},
-{txt:'BayXSha',val:'BayXSha'},
-{txt:'BDF2 UCLA',val:'BDF2-1999'},
-{txt:'BDF2-2005',val:'BDF2-2005'},
-{txt:'BHF2 (Apoe Null) UCLA',val:'BHF2'},
-{txt:'BH/HB F2 UCLA',val:'BHHBF2'},
-{txt:'BXD',val:'BXD'},
-{txt:'BXH',val:'BXH'},
-{txt:'CANDLE',val:'CANDLE'},
-{txt:'CEPH Families',val:'CEPH-2004'},
-{txt:'ColXBur',val:'ColXBur'},
-{txt:'ColXCvi',val:'ColXCvi'},
-{txt:'CastB6/B6Cast F2 UCLA',val:'CTB6F2'},
-{txt:'CXB',val:'CXB'},
-{txt:'Drosophila Genetic Reference Panel',val:'DGRP'},
-{txt:'Harvard Brain Tissue Resource Center',val:'HB'},
-{txt:'Human Liver Cohort',val:'HLC'},
-{txt:'Heterogeneous Stock',val:'HS'},
-{txt:'Heterogeneous Stock Collaborative Cross',val:'HS-CC'},
-{txt:'KIN/YSM',val:'HSB'},
-{txt:'HXB/BXH',val:'HXBBXH'},
-{txt:'J12XJ58F2',val:'J12XJ58F2'},
-{txt:'LXP',val:'LXP'},
-{txt:'LXS',val:'LXS'},
-{txt:'Macaca fasicularis (Cynomolgus monkey)',val:'Macaca-fasicularis'},
-{txt:'Mouse Diversity Panel',val:'MDP'},
-{txt:'NZB/FVB N2 NCI',val:'NZBXFVB-N2'},
-{txt:'Oregon-R x 2b3',val:'Oregon-R_x_2b3'},
-{txt:'QSM',val:'QSM'},
-{txt:'UIOWA SRxSHRSP F2',val:'SRxSHRSPF2'},
-{txt:'SXM',val:'SXM'},
-{txt:'All Groups',val:'all groups'}];
-
-window.tArr = [
-{txt:'',val:''},
-{txt:'Adipose mRNA',val:'Adipose'},
-{txt:'Adrenal Gland mRNA',val:'Adrenal Gland'},
-{txt:'Amygdala mRNA',val:'Amygdala'},
-{txt:'Brain mRNA',val:'Brain'},
-{txt:'Cartilage mRNA',val:'Cartilage'},
-{txt:'Caudal Ganglionic Eminence mRNA',val:'Caudal Ganglionic Eminence'},
-{txt:'Cerebellar Cortex mRNA',val:'Cerebellar Cortex'},
-{txt:'Cerebellum mRNA',val:'Cerebellum'},
-{txt:'Diencephalon mRNA',val:'Diencephalon'},
-{txt:'Dorsal Thalamus mRNA',val:'Dorsal Thalamus'},
-{txt:'Dorsolateral Prefrontal Cortex mRNA',val:'Dorsolateral Prefrontal Cortex'},
-{txt:'Embryo mRNA',val:'Embryo'},
-{txt:'Eye mRNA',val:'Eye'},
-{txt:'Frontal Cerebral Wall mRNA',val:'Frontal Cerebral Wall'},
-{txt:'Heart mRNA',val:'Heart'},
-{txt:'Hematopoietic Cells mRNA',val:'Hematopoietic Cells'},
-{txt:'Hippocampus mRNA',val:'Hippocampus'},
-{txt:'Hypothalamus mRNA',val:'Hypothalamus'},
-{txt:'Inferior Temporal Cortex mRNA',val:'Inferior Temporal Cortex'},
-{txt:'Kidney mRNA',val:'Kidney'},
-{txt:'Lateral Ganglionic Eminence mRNA',val:'Lateral Ganglionic Eminence'},
-{txt:'Leaf mRNA',val:'Leaf'},
-{txt:'Leucocytes mRNA',val:'Leucocytes'},
-{txt:'Liver mRNA',val:'Liver'},
-{txt:'Lung mRNA',val:'Lung'},
-{txt:'Lymphoblast B-cell mRNA',val:'Lymphoblast B-cell'},
-{txt:'Mammary Tumors mRNA',val:'Mammary Tumors'},
-{txt:'Medial Ganglionic Eminence mRNA',val:'Medial Ganglionic Eminence'},
-{txt:'Medial Prefrontal Cortex mRNA',val:'Medial Prefrontal Cortex'},
-{txt:'Mediodorsal Nucleus of Thalamus mRNA',val:'Mediodorsal Nucleus of Thalamus'},
-{txt:'Midbrain mRNA',val:'Midbrain'},
-{txt:'Muscle mRNA',val:'Muscle'},
-{txt:'Neocortex mRNA',val:'Neocortex'},
-{txt:'Newborn Cord Blood mRNA',val:'Newborn Cord Blood'},
-{txt:'Nucleus Accumbens mRNA',val:'Nucleus Accumbens'},
-{txt:'Occipital Cerebral Wall mRNA',val:'Occipital Cerebral Wall'},
-{txt:'Orbital Prefrontal Cortex mRNA',val:'Orbital Prefrontal Cortex'},
-{txt:'Parietal Cerebral Wall mRNA',val:'Parietal Cerebral Wall'},
-{txt:'Peritoneal Fat mRNA',val:'Peritoneal Fat'},
-{txt:'Posterior Inferior Parietal Cortex mRNA',val:'Posterior Inferior Parietal Cortex'},
-{txt:'Posterior Superior Temporal Cortex mRNA',val:'Posterior Superior Temporal Cortex'},
-{txt:'Prefrontal Cortex mRNA',val:'Prefrontal Cortex'},
-{txt:'Primary Auditory (A1) Cortex mRNA',val:'Primary Auditory (A1) Cortex'},
-{txt:'Primary Motor (M1) Cortex mRNA',val:'Primary Motor (M1) Cortex'},
-{txt:'Primary Somatosensory (S1) Cortex mRNA',val:'Primary Somatosensory (S1) Cortex'},
-{txt:'Primary Visual Cortex mRNA',val:'Primary Visual Cortex'},
-{txt:'Retina mRNA',val:'Retina'},
-{txt:'Spleen mRNA',val:'Spleen'},
-{txt:'Striatum mRNA',val:'Striatum'},
-{txt:'T Cell (helper) mRNA',val:'T Cell (helper)'},
-{txt:'T Cell (regulatory) mRNA',val:'T Cell (regulatory)'},
-{txt:'Temporal Cerebral Wall mRNA',val:'Temporal Cerebral Wall'},
-{txt:'Thymus mRNA',val:'Thymus'},
-{txt:'Upper (Rostral) Rhombic Lip mRNA',val:'Upper (Rostral) Rhombic Lip'},
-{txt:'Ventral Forebrain mRNA',val:'Ventral Forebrain'},
-{txt:'Ventral Tegmental Area mRNA',val:'Ventral Tegmental Area'},
-{txt:'Ventrolateral Prefrontal Cortex mRNA',val:'Ventrolateral Prefrontal Cortex'},
-{txt:'Whole Body mRNA',val:'Whole Body'},
-{txt:'Phenotypes',val:'Phenotypes'},
-{txt:'Genotypes',val:'Genotypes'}];
-
-window.dArr = [
-{txt:'',val:''},
-{txt:'GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv',val:'GSE15222_F_A_RI_0409'},
-{txt:'GSE15222 Human Brain Normal Myers (Apr09) RankInv',val:'GSE15222_F_N_RI_0409'},
-{txt:'Normal HEI Retina (April 2010) RankInv',val:'G2NEI_ILM_Retina_BXD_RI0410'},
-{txt:'Full HEI Retina (April 2010) RankInv',val:'Illum_Retina_BXD_RankInv0410'},
-{txt:'ONC HEI Retina (April 2012) RankInv',val:'ONCRetILM6_0412'},
-{txt:'B6D2 ONC Retina (April 2012) RankInv **',val:'B6D2ONCILM_0412'},
-{txt:'INIA Macaca fasicularis Nucleus Accumbens (Jan10) RMA **',val:'INIA_MacFas_Ac_RMA_0110'},
-{txt:'UCLA CTB6/B6CTF2 Liver (2005) mlratio',val:'UCLA_CTB6B6CTF2_LIVER_2005'},
-{txt:'UCLA CTB6/B6CTF2 Adipose (2005) mlratio',val:'UCLA_CTB6B6CTF2_ADIPOSE_2005'},
-{txt:'UCLA CTB6/B6CTF2 Brain (2005) mlratio',val:'UCLA_CTB6B6CTF2_BRAIN_2005'},
-{txt:'UCLA CTB6/B6CTF2 Muscle (2005) mlratio',val:'UCLA_CTB6B6CTF2_MUSCLE_2005'},
-{txt:'INIA Macaca fasicularis Hippocampus (Jan10) RMA **',val:'INIA_MacFas_Hc_RMA_0110'},
-{txt:'UCLA CTB6B6CTF2 Muscle Female mlratio **',val:'UCLA_CTB6B6CTF2_MUSCLE_FEMALE'},
-{txt:'INIA Macaca fasicularis Amygdala (Jan10) RMA **',val:'INIA_MacFas_AMG_RMA_0110'},
-{txt:'UCLA CTB6B6CTF2 Adipose Female mlratio **',val:'UCLA_CTB6B6CTF2_ADIPOSE_FEMALE'},
-{txt:'UCLA CTB6B6CTF2 Brain Female mlratio **',val:'UCLA_CTB6B6CTF2_BRAIN_FEMALE'},
-{txt:'UCLA CTB6B6CTF2 Liver Female mlratio **',val:'UCLA_CTB6B6CTF2_LIVER_FEMALE'},
-{txt:'VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile **',val:'VUBXDMouseMidBrainQ0512'},
-{txt:'GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA',val:'GSE16780_UCLA_ML0911'},
-{txt:'EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **',val:'EPFLMouseMuscleRMA1211'},
-{txt:'EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **',val:'EPFLMouseMuscleHFDRMA1211'},
-{txt:'EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **',val:'EPFLMouseMuscleCDRMA1211'},
-{txt:'BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **',val:'DevStriatum_ILM6.2P14RInv_1111'},
-{txt:'BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **',val:'DevStriatum_ILM6.2P3RInv_1111'},
-{txt:'BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv',val:'DevNeocortex_ILM6.2P14RInv_1111'},
-{txt:'BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv',val:'DevNeocortex_ILM6.2P3RInv_1111'},
-{txt:'G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **',val:'G2HEIONCRetILM6_0911'},
-{txt:'HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **',val:'HEIONCvsCRetILM6_0911'},
-{txt:'JAX Liver Affy M430 2.0 (Jul11) MDP',val:'JAX_CSB_L_0711'},
-{txt:'JAX Liver HF Affy M430 2.0 (Jul11) MDP',val:'JAX_CSB_L_HF_0711'},
-{txt:'JAX Liver 6C Affy M430 2.0 (Jul11) MDP',val:'JAX_CSB_L_6C_0711'},
-{txt:'CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT **',val:'CANDLE_NB_0711'},
-{txt:'KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_AMY_0711'},
-{txt:'KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_A1C_0711'},
-{txt:'KIN/YSM Human TC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_TC_0711'},
-{txt:'KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_CBC_0711'},
-{txt:'KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_CGE_0711'},
-{txt:'KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_FC_0711'},
-{txt:'KIN/YSM Human S1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_S1C_0711'},
-{txt:'KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_STR_0711'},
-{txt:'KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_URL_0711'},
-{txt:'KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_V1C_0711'},
-{txt:'KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_VF_0711'},
-{txt:'KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_VFC_0711'},
-{txt:'KIN/YSM Human STC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_STC_0711'},
-{txt:'KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_ITC_0711'},
-{txt:'KIN/YSM Human LGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_LGE_0711'},
-{txt:'KIN/YSM Human M1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_M1C_0711'},
-{txt:'KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_MD_0711'},
-{txt:'KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_IPC_0711'},
-{txt:'KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_HIP_0711'},
-{txt:'KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_MFC_0711'},
-{txt:'KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_DFC_0711'},
-{txt:'KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_DIE_0711'},
-{txt:'KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_MGE_0711'},
-{txt:'KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_DTH_0711'},
-{txt:'KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_PC_0711'},
-{txt:'KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_OC_0711'},
-{txt:'KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_OFC_0711'},
-{txt:'HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio',val:'HBTRC-MLC_0611'},
-{txt:'HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio',val:'HBTRC-MLC_N_0611'},
-{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio',val:'HBTRC-MLPFC_0611'},
-{txt:'HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio',val:'HBTRC-MLC_AD_0611'},
-{txt:'HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio',val:'HBTRC-MLVC_0611'},
-{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio',val:'HBTRC-MLPFC_N_0611'},
-{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio',val:'HBTRC-MLPFC_AD_0611'},
-{txt:'HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio',val:'HBTRC-MLC_HD_0611'},
-{txt:'HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio',val:'HBTRC-MLVC_N_0611'},
-{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio',val:'HBTRC-MLPFC_HD_0611'},
-{txt:'HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio',val:'HBTRC-MLVC_AD_0611'},
-{txt:'HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio',val:'HBTRC-MLVC_HD_0611'},
-{txt:'INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA',val:'INIA_AmgCoh_0311'},
-{txt:'INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA',val:'INIA_Amg_BLA_RMA_1110'},
-{txt:'INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male',val:'INIA_Amg_BLA_RMA_M_1110'},
-{txt:'INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female',val:'INIA_Amg_BLA_RMA_F_1110'},
-{txt:'GSE9588 Human Liver Normal (Mar11) Both Sexes',val:'HLC_0311'},
-{txt:'GSE9588 Human Liver Normal (Mar11) Males',val:'HLCM_0311'},
-{txt:'HZI Thelp M430v2 (Feb11) RMA',val:'RTHC_0211_R'},
-{txt:'GSE5281 Human Brain Normal Full Liang (Jul09) RMA',val:'GSE5281_F_RMA_N_0709'},
-{txt:'GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA',val:'GSE5281_F_RMA_Alzh_0709'},
-{txt:'OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv',val:'OHSU_HS-CC_ILMStr_0211'},
-{txt:'NCSU Drosophila Whole Body (Jan11) RMA',val:'NCSU_DrosWB_LC_RMA_0111'},
-{txt:'UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females',val:'LV_G_0106_F'},
-{txt:'UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males',val:'LV_G_0106_M'},
-{txt:'UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes',val:'LV_G_0106_B'},
-{txt:'GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **',val:'GenEx_BXD_liverSal_RMA_F_0211'},
-{txt:'GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **',val:'GenEx_BXD_liverSal_RMA_M_0211'},
-{txt:'GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **',val:'GenEx_BXD_liverSal_RMA_0211'},
-{txt:'GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **',val:'GenEx_BXD_liverEt_RMA_F_0211'},
-{txt:'GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **',val:'GenEx_BXD_liverEt_RMA_M_0211'},
-{txt:'GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **',val:'GenEx_BXD_liverEt_RMA_0211'},
-{txt:'SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **',val:'SUH_Liv_RMA_0611'},
-{txt:'HQF BXD Striatum ILM6.1 (Dec10v2) RankInv',val:'UTHSC_Striatum_RankInv_1210'},
-{txt:'HQF BXD Striatum ILM6.1 (Dec10) RankInv',val:'UTHSC_Str_RankInv_1210'},
-{txt:'HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv',val:'HQFNeoc_1210v2_RankInv'},
-{txt:'UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA',val:'UTHSC_SPL_RMA_1210'},
-{txt:'HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv',val:'HQFNeoc_1210_RankInv'},
-{txt:'INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)',val:'INIA_Hyp_RMA_1110'},
-{txt:'INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male',val:'INIA_Hyp_M_RMA_1110'},
-{txt:'INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female',val:'INIA_Hyp_F_RMA_1110'},
-{txt:'UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA',val:'UTHSC_SPL_RMA_1010'},
-{txt:'Hippocampus Consortium M430v2 (Jun06) RMA MDP',val:'HC_M2_0606_MDP'},
-{txt:'UMUTAffy Hippocampus Exon (Feb09) RMA MDP',val:'UMUTAffyExon_0209_RMA_MDP'},
-{txt:'OX UK HS ILM6v1.1 Lung (May 2010) RankInv',val:'OXUKHS_ILMLung_RI0510'},
-{txt:'OX UK HS ILM6v1.1 Liver (May 2010) RankInv',val:'OXUKHS_ILMLiver_RI0510'},
-{txt:'OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv',val:'OXUKHS_ILMHipp_RI0510'},
-{txt:'INIA Macaca fasicularis Prefrontal Cortex (Jan10) RMA **',val:'INIA_MacFas_Pf_RMA_0110'},
-{txt:'INIA Macaca fasicularis Brain (Jan10) RMA **',val:'INIA_MacFas_brain_RMA_0110'},
-{txt:'UAB Whole body D.m. mRNA control (Oct09) RMA',val:'UAB_DrosWB_LC_RMA_1009'},
-{txt:'UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA',val:'UAB_DrosWB_LE_RMA_1009'},
-{txt:'UMCG Stem Cells ILM6v1.1 (Apr09) original',val:'UMCG_0907_HemaStem_ori'},
-{txt:'UMCG Stem Cells ILM6v1.1 (Apr09) transformed',val:'UMCG_0907_HemaStem'},
-{txt:'UMCG Progenitor Cells ILM6v1.1 (Apr09) original',val:'UMCG_0907_Pro_ori'},
-{txt:'UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed',val:'UMCG_0907_Pro'},
-{txt:'UMCG Erythroid Cells ILM6v1.1 (Apr09) original',val:'UMCG_0907_Eryth_ori'},
-{txt:'UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed',val:'UMCG_0907_Eryth'},
-{txt:'UMCG Myeloid Cells ILM6v1.1 (Apr09) original',val:'UMCG_0907_Myeloid_ori'},
-{txt:'UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed',val:'UMCG_0907_Myeloid'},
-{txt:'UTHSC CEPH B-cells Illumina (Sep09) RankInv',val:'UT_CEPH_RankInv0909'},
-{txt:'Mouse kidney M430v2 Female (Aug06) RMA',val:'MA_M2F_0706_R'},
-{txt:'Mouse kidney M430v2 Male (Aug06) RMA',val:'MA_M2M_0706_R'},
-{txt:'Barley1 Leaf INOC TTKS (Aug09) RMA',val:'B1LI0809R'},
-{txt:'Barley1 Leaf INOC TTKS (Aug09) MAS5',val:'B1LI0809M5'},
-{txt:'Barley1 Leaf MOCK TTKS (Aug09) MAS5',val:'B1MI0809M5'},
-{txt:'Barley1 Leaf MOCK TTKS (Aug09) RMA',val:'B1MI0809R'},
-{txt:'GSE15222 Human Brain Myers (Apr09) RankInv',val:'GSE15222_F_RI_0409'},
-{txt:'GSE5281 Human Brain Full Liang (Jul09) RMA',val:'GSE5281_F_RMA0709'},
-{txt:'GSE5281 Human Brain Best 102 Liang (Jul09) RMA',val:'GSE5281_RMA0709'},
-{txt:'UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA',val:'UT_HippRatEx_RMA_0709'},
-{txt:'VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **',val:'VCUEtOH_0609_R'},
-{txt:'VCU BXD VTA Sal M430 2.0 (Jun09) RMA **',val:'VCUSal_0609_R'},
-{txt:'VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **',val:'VCUEtvsSal_0609_R'},
-{txt:'IoP Affy MOE 430v2 Spleen (May09) RMA',val:'IoP_SPL_RMA_0509'},
-{txt:'NCI Mammary M430v2 (Apr09) RMA',val:'NCI_Mam_Tum_RMA_0409'},
-{txt:'NCI Mammary LMT miRNA v2 (Apr09) RMA',val:'NCI_Agil_Mam_Tum_RMA_0409'},
-{txt:'MDC/CAS/UCL Liver 230v2 (Dec08) RMA',val:'HXB_Liver_1208'},
-{txt:'MDC/CAS/UCL Heart 230_V2 (Dec08) RMA',val:'HXB_Heart_1208'},
-{txt:'MDC/CAS/UCL Adrenal 230A (Dec08) RMA',val:'HXB_Adrenal_1208'},
-{txt:'UWA Illumina PBL (Nov08) RSN **',val:'Illum_BXD_PBL_1108'},
-{txt:'UWA Illumina Thymus (Nov08) RSN **',val:'Illum_BXD_Thy_1108'},
-{txt:'UWA Illumina Spleen (Nov08) RSN **',val:'Illum_BXD_Spl_1108'},
-{txt:'Monks CEPH B-cells Agilent (Dec04) Log10Ratio',val:'Human_1008'},
-{txt:'UTK Spleen ILM6.1 (Jan10) VST',val:'UTK_BXDSpl_VST_0110'},
-{txt:'Eye AXBXA Illumina V6.2(Oct08) RankInv Beta',val:'Eye_AXBXA_1008_RankInv'},
-{txt:'Eye M430v2 (Sep08) RMA',val:'Eye_M2_0908_R'},
-{txt:'Eye M430v2 Mutant Gpnmb (Sep08) RMA **',val:'Eye_M2_0908_R_NB'},
-{txt:'Eye M430v2 WT Gpnmb (Sep08) RMA **',val:'Eye_M2_0908_R_ND'},
-{txt:'Eye M430v2 Mutant Tyrp1 (Sep08) RMA **',val:'Eye_M2_0908_R_MT'},
-{txt:'Eye M430v2 WT WT (Sep08) RMA **',val:'Eye_M2_0908_WTWT'},
-{txt:'Eye M430v2 WT Tyrp1 (Sep08) RMA **',val:'Eye_M2_0908_R_WT'},
-{txt:'BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **',val:'BXD_GLA_0911'},
-{txt:'UCLA BXH and BXD Cartilage v2',val:'UCLA_BXHBXD_CARTILAGE_V2'},
-{txt:'UCLA BXD and BXH Cartilage v2',val:'UCLA_BXDBXH_CARTILAGE_V2'},
-{txt:'UCLA BXD and BXH Cartilage',val:'UCLA_BXDBXH_CARTILAGE'},
-{txt:'UCLA BXH and BXD Cartilage',val:'UCLA_BXHBXD_CARTILAGE'},
-{txt:'UCLA BHF2 Brain Male mlratio',val:'UCLA_BHF2_BRAIN_MALE'},
-{txt:'UCLA BHF2 Brain Female mlratio',val:'UCLA_BHF2_BRAIN_FEMALE'},
-{txt:'UCLA BHF2 Adipose Female mlratio',val:'UCLA_BHF2_ADIPOSE_FEMALE'},
-{txt:'UCLA BHF2 Adipose Male mlratio',val:'UCLA_BHF2_ADIPOSE_MALE'},
-{txt:'UCLA CTB6B6CTF2 Muscle Male mlratio **',val:'UCLA_CTB6B6CTF2_MUSCLE_MALE'},
-{txt:'UCLA CTB6B6CTF2 Liver Male mlratio **',val:'UCLA_CTB6B6CTF2_LIVER_MALE'},
-{txt:'UCLA CTB6B6CTF2 Brain Male mlratio **',val:'UCLA_CTB6B6CTF2_BRAIN_MALE'},
-{txt:'UCLA CTB6B6CTF2 Adipose Male mlratio **',val:'UCLA_CTB6B6CTF2_ADIPOSE_MALE'},
-{txt:'UCLA BHF2 Liver Male mlratio',val:'UCLA_BHF2_LIVER_MALE'},
-{txt:'UCLA BHF2 Liver Female mlratio',val:'UCLA_BHF2_LIVER_FEMALE'},
-{txt:'UCLA BHHBF2 Brain Female Only',val:'UCLA_BHHBF2_BRAIN_FEMALE'},
-{txt:'UCLA BHHBF2 Liver Female Only',val:'UCLA_BHHBF2_LIVER_FEMALE'},
-{txt:'UCLA BHHBF2 Muscle Male Only',val:'UCLA_BHHBF2_MUSCLE_MALE'},
-{txt:'UCLA BHHBF2 Muscle Female Only',val:'UCLA_BHHBF2_MUSCLE_FEMALE'},
-{txt:'UCLA BHHBF2 Liver Male Only',val:'UCLA_BHHBF2_LIVER_MALE'},
-{txt:'UCLA BHHBF2 Brain Male Only',val:'UCLA_BHHBF2_BRAIN_MALE'},
-{txt:'UCLA BHHBF2 Adipose Female Only',val:'UCLA_BHHBF2_ADIPOSE_FEMALE'},
-{txt:'UCLA BHHBF2 Adipose Male Only',val:'UCLA_BHHBF2_ADIPOSE_MALE'},
-{txt:'UCLA BHF2 Muscle Female mlratio **',val:'UCLA_BHF2_MUSCLE_FEMALE'},
-{txt:'UCLA BHF2 Muscle Male mlratio **',val:'UCLA_BHF2_MUSCLE_MALE'},
-{txt:'UCLA BXH Cartilage',val:'UCLA_BXH_CARTILAGE'},
-{txt:'UCLA BXD Cartilage',val:'UCLA_BXD_CARTILAGE'},
-{txt:'UCLA BHHBF2 Adipose (2005) mlratio **',val:'UCLA_BHHBF2_ADIPOSE_2005'},
-{txt:'UCLA BHHBF2 Brain (2005) mlratio **',val:'UCLA_BHHBF2_BRAIN_2005'},
-{txt:'UCLA BHHBF2 Liver (2005) mlratio **',val:'UCLA_BHHBF2_LIVER_2005'},
-{txt:'UCLA BHHBF2 Muscle (2005) mlratio **',val:'UCLA_BHHBF2_MUSCLE_2005'},
-{txt:'UCLA BHF2 Adipose (June05) mlratio',val:'UCLA_BHF2_ADIPOSE_0605'},
-{txt:'UCLA BDF2 Liver (1999) mlratio',val:'UCLA_BDF2_LIVER_1999'},
-{txt:'UCLA BHF2 Muscle (June05) mlratio **',val:'UCLA_BHF2_MUSCLE_0605'},
-{txt:'UCLA BHF2 Brain (June05) mlratio',val:'UCLA_BHF2_BRAIN_0605'},
-{txt:'UCLA BHF2 Liver (June05) mlratio',val:'UCLA_BHF2_LIVER_0605'},
-{txt:'HZI Lung M430v2 (Apr08) RMA',val:'HZI_0408_R'},
-{txt:'HZI Lung M430v2 (Apr08) MAS5',val:'HZI_0408_M'},
-{txt:'HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv',val:'HQFNeoc_0208_RankInv'},
-{txt:'VCU BXD NA Sal M430 2.0 (Oct07) RMA',val:'VCUSalo_1007_R'},
-{txt:'VCU BXD NA EtOH M430 2.0 (Oct07) RMA **',val:'VCUEtOH_1007_R'},
-{txt:'VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **',val:'VCUSal_1007_R'},
-{txt:'Stuart Spleen M430v2 (Nov07) RMA',val:'STSPL_1107_R'},
-{txt:'HQF BXD Striatum ILM6.1 (Nov07) RankInv',val:'UTHSC_1107_RankInv'},
-{txt:'Hippocampus Illumina (Aug07) LOESS',val:'Illum_LXS_Hipp_loess0807'},
-{txt:'Hippocampus Illumina (Aug07) LOESS_NB',val:'Illum_LXS_Hipp_loess_nb0807'},
-{txt:'Hippocampus Illumina (Aug07) QUANT',val:'Illum_LXS_Hipp_quant0807'},
-{txt:'Hippocampus Illumina (Aug07) QUANT_NB',val:'Illum_LXS_Hipp_quant_nb0807'},
-{txt:'Hippocampus Illumina (Aug07) RSN',val:'Illum_LXS_Hipp_rsn0807'},
-{txt:'Hippocampus Illumina (Aug07) RSN_NB',val:'Illum_LXS_Hipp_rsn_nb0807'},
-{txt:'VCU BXD PFC EtOH M430 2.0 (Dec06) RMA',val:'VCUEtOH_1206_R'},
-{txt:'VCU BXD PFC Sal M430 2.0 (Dec06) RMA',val:'VCUSal_1206_R'},
-{txt:'VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore',val:'VCUSal_1006_R'},
-{txt:'VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **',val:'VCU_PF_Air_0111_R'},
-{txt:'VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **',val:'VCU_PF_Et_0111_R'},
-{txt:'VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **',val:'VCU_PF_AvE_0111_Ss'},
-{txt:'Hippocampus Illumina (May07) RankInv',val:'Hipp_Illumina_RankInv_0507'},
-{txt:'VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **',val:'VCUEtOH_0806_R'},
-{txt:'VCU LXS PFC Sal M430A 2.0 (Aug06) RMA',val:'VCUSal_0806_R'},
-{txt:'VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **',val:'VCUEt_vs_Sal_0806_R'},
-{txt:'Barley1 Embryo gcRMA SCRI (Dec06)',val:'B139_K_1206_R'},
-{txt:'Barley1 Leaf MAS 5.0 SCRI (Dec06)',val:'B30_K_1206_M'},
-{txt:'Barley1 Leaf gcRMAn SCRI (Dec06)',val:'B30_K_1206_Rn'},
-{txt:'Barley1 Leaf gcRMA SCRI (Dec06)',val:'B30_K_1206_R'},
-{txt:'Barley1 Embryo MAS 5.0 SCRI (Dec06)',val:'B139_K_1206_M'},
-{txt:'UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA',val:'BR_M2_1106_R'},
-{txt:'HZI Treg M430v2 (Feb11) RMA',val:'RTC_1106_R'},
-{txt:'UIOWA Eye mRNA RAE230v2 (Sep06) RMA',val:'UIOWA_Eye_RMA_0906'},
-{txt:'Mouse kidney M430v2 Sex Balanced (Aug06) RMA',val:'MA_M2_0806_R'},
-{txt:'Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN',val:'MA_M2_0806_P'},
-{txt:'Mouse Kidney M430v2 (Jul06) PDNN',val:'MA_M2_0706_P'},
-{txt:'Mouse Kidney M430v2 (Jul06) RMA',val:'MA_M2_0706_R'},
-{txt:'Barley1 Embryo0 gcRMA SCRI (Apr06)',val:'B150_K_0406_R'},
-{txt:'INIA Brain mRNA M430 (Jun06) RMA',val:'IBR_M_0606_R'},
-{txt:'Hippocampus Consortium M430v2 (Jun06) PDNN',val:'HC_M2_0606_P'},
-{txt:'Hippocampus Consortium M430v2 (Jun06) MAS5',val:'HC_M2_0606_M'},
-{txt:'Hippocampus Consortium M430v2 (Jun06) RMA',val:'HC_M2_0606_R'},
-{txt:'INIA Brain mRNA M430 (Jan06) RMA',val:'IBR_M_0106_R'},
-{txt:'INIA Brain mRNA M430 (Jan06) PDNN',val:'IBR_M_0106_P'},
-{txt:'Hippocampus Consortium M430v2 CXB (Dec05) RMA',val:'HC_M2CB_1205_R'},
-{txt:'Hippocampus Consortium M430v2 CXB (Dec05) PDNN',val:'HC_M2CB_1205_P'},
-{txt:'UTHSC Brain mRNA U74Av2 (Nov05) PDNN',val:'BR_U_1105_P'},
-{txt:'UMUTAffy Hippocampus Exon (Feb09) RMA',val:'UMUTAffyExon_0209_RMA'},
-{txt:'UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv',val:'UT_ILM_BXD_hipp_NON_0909'},
-{txt:'UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv',val:'UT_ILM_BXD_hipp_NOS_0909'},
-{txt:'UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv',val:'UT_ILM_BXD_hipp_NOE_0909'},
-{txt:'UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv',val:'UT_ILM_BXD_hipp_RSS_0909'},
-{txt:'UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv',val:'UT_ILM_BXD_hipp_RSE_0909'},
-{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN',val:'SA_M2_0905_P'},
-{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA',val:'SA_M2_0905_R'},
-{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5',val:'SA_M2_0905_M'},
-{txt:'UTHSC Brain mRNA U74Av2 (Aug05) RMA',val:'BR_U_0805_R'},
-{txt:'UTHSC Brain mRNA U74Av2 (Aug05) PDNN',val:'BR_U_0805_P'},
-{txt:'UTHSC Brain mRNA U74Av2 (Aug05) MAS5',val:'BR_U_0805_M'},
-{txt:'MDC/CAS/ICL Peritoneal Fat 230A (Aug05) MAS5',val:'FT_2A_0805_M'},
-{txt:'OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA',val:'BRF2_M_0805_R'},
-{txt:'OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN',val:'BRF2_M_0805_P'},
-{txt:'OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5',val:'BRF2_M_0805_M'},
-{txt:'MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8',val:'FT_2A_0605_Rz'},
-{txt:'HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean',val:'SA_M2_0405_MC'},
-{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN',val:'GCB_M2_0505_P'},
-{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA',val:'GCB_M2_0505_R'},
-{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5',val:'GCB_M2_0505_M'},
-{txt:'MDC/CAS/ICL Kidney 230A (Apr05) MAS5',val:'KI_2A_0405_M'},
-{txt:'HBP Rosen Striatum M430V2 (Apr05) RMA Clean',val:'SA_M2_0405_RC'},
-{txt:'HBP Rosen Striatum M430V2 (Apr05) PDNN Clean',val:'SA_M2_0405_PC'},
-{txt:'HBP Rosen Striatum M430V2 (Apr05) SScore',val:'SA_M2_0405_SS'},
-{txt:'HBP Rosen Striatum M430V2 (Apr05) RMA Orig',val:'SA_M2_0405_RR'},
-{txt:'MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8',val:'KI_2A_0405_Rz'},
-{txt:'MDC/CAS/ICL Kidney 230A (Apr05) RMA',val:'KI_2A_0405_R'},
-{txt:'SJUT Cerebellum mRNA M430 (Mar05) PDNN',val:'CB_M_0305_P'},
-{txt:'SJUT Cerebellum mRNA M430 (Mar05) MAS5',val:'CB_M_0305_M'},
-{txt:'SJUT Cerebellum mRNA M430 (Mar05) RMA',val:'CB_M_0305_R'},
-{txt:'HQF Striatum Exon (Feb09) RMA',val:'Striatum_Exon_0209'},
-{txt:'BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv',val:'DevNeocortex_ILM6.2P14RInv_1110'},
-{txt:'BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **',val:'DevStriatum_ILM6.2P14RInv_1110'},
-{txt:'BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **',val:'DevStriatum_ILM6.2P3RInv_1110'},
-{txt:'BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv',val:'DevNeocortex_ILM6.2P3RInv_1110'},
-{txt:'SJUT Cerebellum mRNA M430 (Oct04) MAS5',val:'CB_M_1004_M'},
-{txt:'SJUT Cerebellum mRNA M430 (Oct04) PDNN',val:'CB_M_1004_P'},
-{txt:'SJUT Cerebellum mRNA M430 (Oct04) RMA',val:'CB_M_1004_R'},
-{txt:'(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5',val:'LVF2_M_0704_M'},
-{txt:'(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA',val:'LVF2_M_0704_R'},
-{txt:'NCI Mammary mRNA M430 (July04) MAS5',val:'MA_M_0704_M'},
-{txt:'NCI Mammary mRNA M430 (July04) RMA',val:'MA_M_0704_R'},
-{txt:'OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN',val:'BRF2_M_0304_P'},
-{txt:'OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA',val:'BRF2_M_0304_R'},
-{txt:'OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5',val:'BRF2_M_0304_M'},
-{txt:'GNF Stem Cells U74Av2 (Mar04) RMA',val:'HC_U_0304_R'},
-{txt:'INIA Brain mRNA M430 (Feb04) PDNN',val:'CB_M_0204_P'},
-{txt:'SJUT Cerebellum mRNA M430 (Oct03) MAS5',val:'CB_M_1003_M'},
-{txt:'Hippocampus Illumina NOS (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NOS_1008'},
-{txt:'Hippocampus Illumina RSE (Oct08) RankInv beta',val:'Illum_LXS_Hipp_RSE_1008'},
-{txt:'GSE9588 Human Liver Normal (Mar11) Females',val:'HLCF_0311'},
-{txt:'Hippocampus Illumina RSS (Oct08) RankInv beta',val:'Illum_LXS_Hipp_RSS_1008'},
-{txt:'Hippocampus Illumina NOE (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NOE_1008'},
-{txt:'Hippocampus Illumina NON (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NON_1008'},
-{txt:'CANDLE Published Phenotypes',val:'CANDLEPublish'},
-{txt:'HLC Published Phenotypes',val:'HLCPublish'},
-{txt:'AKXD Genotypes',val:'AKXDGeno'},
-{txt:'AXBXA Published Phenotypes',val:'AXBXAPublish'},
-{txt:'AXBXA Genotypes',val:'AXBXAGeno'},
-{txt:'B6BTBRF2 Published Phenotypes',val:'B6BTBRF2Publish'},
-{txt:'B6BTBRF2 Genotypes',val:'B6BTBRF2Geno'},
-{txt:'B6D2F2 Genotypes',val:'B6D2F2Geno'},
-{txt:'BDF2-1999 Genotypes',val:'BDF2-1999Geno'},
-{txt:'BDF2-2005 Genotypes',val:'BDF2-2005Geno'},
-{txt:'BHF2 Genotypes',val:'BHF2Geno'},
-{txt:'BHHBF2 Genotypes',val:'BHHBF2Geno'},
-{txt:'BXD Published Phenotypes',val:'BXDPublish'},
-{txt:'BXD Genotypes',val:'BXDGeno'},
-{txt:'BXH Published Phenotypes',val:'BXHPublish'},
-{txt:'BXH Genotypes',val:'BXHGeno'},
-{txt:'CTB6F2 Published Phenotypes',val:'CTB6F2Publish'},
-{txt:'CTB6F2 Genotypes',val:'CTB6F2Geno'},
-{txt:'CXB Published Phenotypes',val:'CXBPublish'},
-{txt:'CXB Genotypes',val:'CXBGeno'},
-{txt:'LXS Published Phenotypes',val:'LXSPublish'},
-{txt:'LXS Genotypes',val:'LXSGeno'},
-{txt:'Mouse Phenome Database',val:'MDPPublish'},
-{txt:'MDP Genotypes',val:'MDPGeno'},
-{txt:'NZBXFVB-N2 Published Phenotypes',val:'NZBXFVB-N2Publish'},
-{txt:'HXBBXH Published Phenotypes',val:'HXBBXHPublish'},
-{txt:'HXBBXH Genotypes',val:'HXBBXHGeno'},
-{txt:'BayXSha Published Phenotypes',val:'BayXShaPublish'},
-{txt:'BayXSha Genotypes',val:'BayXShaGeno'},
-{txt:'ColXBur Published Phenotypes',val:'ColXBurPublish'},
-{txt:'ColXBur Genotypes',val:'ColXBurGeno'},
-{txt:'ColXCvi Published Phenotypes',val:'ColXCviPublish'},
-{txt:'ColXCvi Genotypes',val:'ColXCviGeno'},
-{txt:'SXM Published Phenotypes',val:'SXMPublish'},
-{txt:'SXM Genotypes',val:'SXMGeno'},
-{txt:'J12XJ58F2 Published Phenotypes',val:'J12XJ58F2Publish'},
-{txt:'LXP Published Phenotypes',val:'LXPPublish'},
-{txt:'All Phenotypes',val:'_allPublish'}];
-
-window.lArr = [
- null,
-[1,1,4,79],
-[1,1,4,80],
-[1,1,4,127],
-[1,1,4,128],
-[1,2,4,1],
-[1,2,4,2],
-[1,2,4,126],
-[1,14,59,288],
-[1,14,34,32],
-[1,15,26,119],
-[1,15,26,142],
-[1,21,8,60],
-[1,21,8,61],
-[1,21,8,63],
-[1,21,8,67],
-[1,21,42,62],
-[1,21,42,65],
-[1,21,42,66],
-[1,21,42,69],
-[1,21,46,64],
-[1,21,46,68],
-[1,21,46,70],
-[1,21,46,71],
-[1,22,59,289],
-[1,22,24,76],
-[1,22,24,77],
-[1,22,24,284],
-[1,25,3,33],
-[1,25,6,37],
-[1,25,7,36],
-[1,25,9,54],
-[1,25,10,56],
-[1,25,11,53],
-[1,25,14,38],
-[1,25,17,51],
-[1,25,19,46],
-[1,25,21,47],
-[1,25,28,55],
-[1,25,29,52],
-[1,25,30,49],
-[1,25,36,58],
-[1,25,37,59],
-[1,25,38,57],
-[1,25,40,50],
-[1,25,41,45],
-[1,25,43,34],
-[1,25,44,48],
-[1,25,45,39],
-[1,25,46,42],
-[1,25,49,40],
-[1,25,52,35],
-[1,25,54,41],
-[1,25,55,43],
-[1,25,57,44],
-[2,30,3,14],
-[2,30,4,108],
-[2,30,17,12],
-[2,30,35,7],
-[2,30,42,107],
-[3,3,60,290],
-[3,3,27,135],
-[3,3,27,274],
-[3,3,27,275],
-[3,4,59,291],
-[3,4,60,292],
-[3,4,13,144],
-[3,5,59,293],
-[3,5,60,294],
-[3,5,24,272],
-[3,5,24,273],
-[3,6,60,295],
-[3,6,4,246],
-[3,6,4,247],
-[3,6,4,248],
-[3,6,4,276],
-[3,6,4,277],
-[3,6,4,278],
-[3,8,60,296],
-[3,8,24,183],
-[3,9,60,297],
-[3,9,49,239],
-[3,9,49,240],
-[3,9,49,241],
-[3,10,60,298],
-[3,10,1,158],
-[3,10,1,159],
-[3,10,1,182],
-[3,10,4,156],
-[3,10,4,157],
-[3,10,4,185],
-[3,10,24,164],
-[3,10,24,165],
-[3,10,24,186],
-[3,10,32,174],
-[3,10,32,175],
-[3,10,32,184],
-[3,11,60,299],
-[3,11,1,172],
-[3,11,1,173],
-[3,11,1,178],
-[3,11,4,166],
-[3,11,4,171],
-[3,11,4,179],
-[3,11,24,167],
-[3,11,24,170],
-[3,11,24,180],
-[3,11,32,168],
-[3,11,32,169],
-[3,11,32,181],
-[3,12,59,300],
-[3,12,60,301],
-[3,12,3,72],
-[3,12,3,73],
-[3,12,3,74],
-[3,12,3,75],
-[3,12,4,216],
-[3,12,4,224],
-[3,12,4,228],
-[3,12,4,229],
-[3,12,4,232],
-[3,12,4,242],
-[3,12,4,243],
-[3,12,4,244],
-[3,12,4,280],
-[3,12,5,153],
-[3,12,5,154],
-[3,12,5,177],
-[3,12,8,251],
-[3,12,8,252],
-[3,12,8,253],
-[3,12,8,261],
-[3,12,8,262],
-[3,12,8,263],
-[3,12,8,269],
-[3,12,8,270],
-[3,12,8,271],
-[3,12,8,281],
-[3,12,13,145],
-[3,12,13,146],
-[3,12,13,147],
-[3,12,13,148],
-[3,12,13,149],
-[3,12,13,150],
-[3,12,13,151],
-[3,12,16,111],
-[3,12,16,112],
-[3,12,16,113],
-[3,12,16,114],
-[3,12,16,115],
-[3,12,16,116],
-[3,12,16,117],
-[3,12,16,118],
-[3,12,16,279],
-[3,12,17,225],
-[3,12,17,226],
-[3,12,17,227],
-[3,12,17,233],
-[3,12,17,234],
-[3,12,17,235],
-[3,12,17,236],
-[3,12,17,237],
-[3,12,17,238],
-[3,12,18,98],
-[3,12,18,99],
-[3,12,18,100],
-[3,12,20,120],
-[3,12,20,121],
-[3,12,20,219],
-[3,12,20,220],
-[3,12,20,221],
-[3,12,20,222],
-[3,12,23,139],
-[3,12,24,19],
-[3,12,24,83],
-[3,12,24,84],
-[3,12,24,85],
-[3,12,24,86],
-[3,12,24,87],
-[3,12,24,88],
-[3,12,24,89],
-[3,12,24,90],
-[3,12,24,91],
-[3,12,24,92],
-[3,12,25,187],
-[3,12,25,188],
-[3,12,31,18],
-[3,12,32,20],
-[3,12,32,21],
-[3,12,32,22],
-[3,12,33,25],
-[3,12,33,26],
-[3,12,33,95],
-[3,12,33,97],
-[3,12,33,189],
-[3,12,33,265],
-[3,12,33,268],
-[3,12,35,190],
-[3,12,35,191],
-[3,12,35,192],
-[3,12,42,201],
-[3,12,42,202],
-[3,12,42,203],
-[3,12,42,204],
-[3,12,42,205],
-[3,12,42,206],
-[3,12,47,3],
-[3,12,47,4],
-[3,12,47,5],
-[3,12,47,6],
-[3,12,47,27],
-[3,12,47,28],
-[3,12,48,96],
-[3,12,48,101],
-[3,12,48,133],
-[3,12,48,141],
-[3,12,48,143],
-[3,12,49,23],
-[3,12,49,24],
-[3,12,49,93],
-[3,12,49,94],
-[3,12,49,194],
-[3,12,49,250],
-[3,12,49,255],
-[3,12,49,256],
-[3,12,49,257],
-[3,12,49,258],
-[3,12,49,264],
-[3,12,49,266],
-[3,12,49,267],
-[3,12,50,78],
-[3,12,51,217],
-[3,12,53,140],
-[3,12,56,130],
-[3,12,56,131],
-[3,12,56,132],
-[3,13,59,302],
-[3,13,60,303],
-[3,13,5,152],
-[3,13,5,155],
-[3,13,5,176],
-[3,18,59,304],
-[3,18,60,305],
-[3,18,1,9],
-[3,18,1,15],
-[3,18,1,163],
-[3,18,4,10],
-[3,18,4,16],
-[3,18,4,162],
-[3,18,24,8],
-[3,18,24,17],
-[3,18,24,161],
-[3,18,32,11],
-[3,18,32,13],
-[3,18,32,160],
-[3,19,59,306],
-[3,19,60,307],
-[3,19,17,230],
-[3,19,17,231],
-[3,19,48,193],
-[3,23,17,106],
-[3,23,24,105],
-[3,23,25,104],
-[3,24,49,81],
-[3,29,59,308],
-[3,29,60,309],
-[3,29,17,195],
-[3,29,17,196],
-[3,29,17,197],
-[3,29,17,198],
-[3,29,17,199],
-[3,29,17,200],
-[3,29,17,207],
-[3,29,17,282],
-[3,29,17,283],
-[3,29,17,285],
-[3,29,17,286],
-[3,29,17,287],
-[3,29,42,208],
-[3,29,42,209],
-[3,29,42,210],
-[3,31,59,310],
-[3,31,60,311],
-[3,31,17,102],
-[3,31,17,103],
-[3,31,24,29],
-[3,31,24,30],
-[3,31,24,31],
-[3,32,59,312],
-[3,32,27,134],
-[4,26,59,313],
-[4,26,60,314],
-[4,26,2,138],
-[4,26,15,137],
-[4,26,17,129],
-[4,26,20,254],
-[4,26,20,259],
-[4,26,20,260],
-[4,26,24,136],
-[4,26,39,245],
-[4,26,39,249],
-[4,35,13,218],
-[5,20,58,82],
-[5,33,58,109],
-[5,33,58,110],
-[6,7,59,315],
-[6,7,60,316],
-[6,16,59,317],
-[6,16,60,318],
-[6,17,59,319],
-[6,17,60,320],
-[7,34,22,122],
-[7,34,22,123],
-[7,34,22,124],
-[7,34,22,125],
-[7,36,59,321],
-[7,36,60,322],
-[7,36,12,211],
-[7,36,12,215],
-[7,36,12,223],
-[7,36,22,212],
-[7,36,22,213],
-[7,36,22,214],
-[8,27,59,323],
-[9,28,59,324],
-[10,37,59,325]];
-
-
diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee b/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee
index df891826..a58efe2e 100644
--- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee
+++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee
@@ -7,7 +7,7 @@ $ ->
populate_species()
apply_default()
- $.ajax '/static/new/javascript/dataset_menu_structure',
+ $.ajax '/static/new/javascript/dataset_menu_structure.json',
dataType: 'json'
success: process_json
@@ -15,6 +15,7 @@ $ ->
species_list = @jdata.species
redo_dropdown($('#species'), species_list)
populate_group()
+ window.populate_species = populate_species
populate_group = ->
console.log("in populate group")
@@ -22,6 +23,7 @@ $ ->
group_list = @jdata.groups[species]
redo_dropdown($('#group'), group_list)
populate_type()
+ window.populate_group = populate_group
populate_type = ->
species = $('#species').val()
@@ -29,6 +31,7 @@ $ ->
type_list = @jdata.types[species][group]
redo_dropdown($('#type'), type_list)
populate_dataset()
+ window.populate_type = populate_type
populate_dataset = ->
species = $('#species').val()
@@ -38,6 +41,7 @@ $ ->
dataset_list = @jdata.datasets[species][group][type]
console.log("pop_dataset:", dataset_list)
redo_dropdown($('#dataset'), dataset_list)
+ window.populate_dataset = populate_dataset
redo_dropdown = (dropdown, items) ->
console.log("in redo:", dropdown, items)
@@ -99,7 +103,9 @@ $ ->
$("##{item[0]}").val(defaults[item[0]])
if item[1]
- window["populate_" + item[1]]
+ populate_function = "populate_" + item[1]
+ console.log("Calling:", populate_function)
+ window[populate_function]()
diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
index 655aac15..681e4301 100644
--- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
+++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
@@ -9,7 +9,7 @@
populate_species();
return apply_default();
};
- $.ajax('/static/new/javascript/dataset_menu_structure', {
+ $.ajax('/static/new/javascript/dataset_menu_structure.json', {
dataType: 'json',
success: process_json
});
@@ -19,6 +19,7 @@
redo_dropdown($('#species'), species_list);
return populate_group();
};
+ window.populate_species = populate_species;
populate_group = function() {
var group_list, species;
console.log("in populate group");
@@ -27,6 +28,7 @@
redo_dropdown($('#group'), group_list);
return populate_type();
};
+ window.populate_group = populate_group;
populate_type = function() {
var group, species, type_list;
species = $('#species').val();
@@ -35,6 +37,7 @@
redo_dropdown($('#type'), type_list);
return populate_dataset();
};
+ window.populate_type = populate_type;
populate_dataset = function() {
var dataset_list, group, species, type;
species = $('#species').val();
@@ -45,6 +48,7 @@
console.log("pop_dataset:", dataset_list);
return redo_dropdown($('#dataset'), dataset_list);
};
+ window.populate_dataset = populate_dataset;
redo_dropdown = function(dropdown, items) {
var item, _i, _len, _results;
console.log("in redo:", dropdown, items);
@@ -99,7 +103,7 @@
});
};
apply_default = function() {
- var defaults, item, _i, _len, _ref, _results;
+ var defaults, item, populate_function, _i, _len, _ref, _results;
defaults = $.cookie('search_defaults');
if (!defaults) {
return;
@@ -111,7 +115,9 @@
item = _ref[_i];
$("#" + item[0]).val(defaults[item[0]]);
if (item[1]) {
- _results.push(window["populate_" + item[1]]);
+ populate_function = "populate_" + item[1];
+ console.log("Calling:", populate_function);
+ _results.push(window[populate_function]());
} else {
_results.push(void 0);
}
--
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