From 1cf4b598dd986760627eef4144c0445679c97866 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Mon, 9 Apr 2018 17:25:15 +0000
Subject: Removed unused code from get_select_dataset.py and
 get_group_samplelists.py scripts

---
 wqflask/maintenance/gen_select_dataset.py    |  9 ++++-----
 wqflask/maintenance/get_group_samplelists.py | 10 ----------
 2 files changed, 4 insertions(+), 15 deletions(-)

(limited to 'wqflask/maintenance')

diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py
index f62d0cc1..16dcebc5 100644
--- a/wqflask/maintenance/gen_select_dataset.py
+++ b/wqflask/maintenance/gen_select_dataset.py
@@ -66,7 +66,7 @@ from pprint import pformat as pf
 print('WARNING: This conversion is now OBSOLETE as the menu gets built from the database in Javascript using GN_SERVER instead!')
 
 
-def parse_db_uri(db_uri):
+def parse_db_uri():
     """Converts a database URI to the db name, host name, user name, and password"""
 
     parsed_uri = urlparse.urlparse(SQL_URI)
@@ -81,7 +81,6 @@ def parse_db_uri(db_uri):
     return db_conn_info
 
 
-
 def get_species():
     """Build species list"""
     Cursor.execute("select Name, MenuName from Species where Species.Name != 'macaque monkey' order by OrderId")
@@ -268,7 +267,7 @@ def build_datasets(species, group, type_name):
 def main():
     """Generates and outputs (as json file) the data for the main dropdown menus on the home page"""
 
-    parse_db_uri(SQL_URI)
+    parse_db_uri()
 
     species = get_species()
     groups = get_groups(species)
@@ -307,6 +306,6 @@ def _test_it():
     #print("build_datasets:", pf(datasets))
 
 if __name__ == '__main__':
-    Conn = MySQLdb.Connect(**parse_db_uri(SQL_URI))
+    Conn = MySQLdb.Connect(**parse_db_uri())
     Cursor = Conn.cursor()
-    main()
+    main()
\ No newline at end of file
diff --git a/wqflask/maintenance/get_group_samplelists.py b/wqflask/maintenance/get_group_samplelists.py
index 04e94886..1dc6c46c 100644
--- a/wqflask/maintenance/get_group_samplelists.py
+++ b/wqflask/maintenance/get_group_samplelists.py
@@ -6,16 +6,6 @@ import gzip
 
 from base import webqtlConfig
 
-def process_genofiles(geno_dir=webqtlConfig.GENODIR):
-    print("Yabba")
-    #sys.exit("Dabba")
-    os.chdir(geno_dir)
-    for geno_file in glob.glob("*"):
-        if geno_file.lower().endswith(('.geno', '.geno.gz')):
-            #group_name = genofilename.split('.')[0]
-            sample_list = get_samplelist(geno_file)
-
-
 def get_samplelist(file_type, geno_file):
     if file_type == "geno":
         return get_samplelist_from_geno(geno_file)
-- 
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