From af7d0bca229f3ebaa80a16d1ce3a2bf1a8abd5df Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 20 Apr 2016 08:37:55 +0000
Subject: [PATCH 023/100] WIP fixing all paths

---
 wqflask/base/data_set.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'wqflask/base')

diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index e37a838f..0e5a3ac1 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -405,10 +405,11 @@ class DatasetGroup(object):
             #print("Cache not hit")
 
             from utility.tools import plink_command
-            PLINK_PATH,PLINK_COMMAND = plink_command()
+            PLINK_RUN = plink_command()
 
             geno_file_path = webqtlConfig.GENODIR+self.name+".geno"
             plink_file_path = PLINK_PATH+"/"+self.name+".fam"
+            # @FIXME PJOTR/ZACH: .fam files should go into FLATFILES
 
             if os.path.isfile(plink_file_path):
                 self.samplelist = get_group_samplelists.get_samplelist("plink", plink_file_path)
-- 
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