From be09d207ee4e2705e358102f8bdbcd1da7f70ca2 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Fri, 24 Apr 2020 16:06:36 -0500
Subject: Replaced hard-coded instances of GN2 urls with ones pulled from
 settings file

---
 wqflask/base/data_set.py | 4 ++--
 wqflask/base/trait.py    | 7 ++++---
 2 files changed, 6 insertions(+), 5 deletions(-)

(limited to 'wqflask/base')

diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index fae62875..8652e6b7 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -56,7 +56,7 @@ from pprint import pformat as pf
 from db.gn_server import menu_main
 from db.call import fetchall,fetchone,fetch1
 
-from utility.tools import USE_GN_SERVER, USE_REDIS, flat_files, flat_file_exists
+from utility.tools import USE_GN_SERVER, USE_REDIS, flat_files, flat_file_exists, GN2_BASE_URL
 from utility.logger import getLogger
 logger = getLogger(__name__ )
 
@@ -94,7 +94,7 @@ Publish or ProbeSet. E.g.
         """
         self.datasets = {}
         if rebuild: #ZS: May make this the only option
-            data = json.loads(requests.get("http://gn2.genenetwork.org/api/v_pre1/gen_dropdown").content)
+            data = json.loads(requests.get(GN2_BASE_URL + "/api/v_pre1/gen_dropdown").content)
             #data = gen_menu.gen_dropdown_json()
         else:
             file_name = "wqflask/static/new/javascript/dataset_menu_structure.json"
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index 5525472e..e454c593 100644
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -14,6 +14,7 @@ from base.data_set import create_dataset
 from db import webqtlDatabaseFunction
 from utility import webqtlUtil
 from utility import hmac
+from utility.tools import GN2_BASE_URL
 
 from wqflask import app
 
@@ -135,9 +136,9 @@ class GeneralTrait(object):
 
         alias = 'Not available'
         if self.symbol:
-            human_response = requests.get("http://gn2.genenetwork.org/gn3/gene/aliases/" + self.symbol.upper())
-            mouse_response = requests.get("http://gn2.genenetwork.org/gn3/gene/aliases/" + self.symbol.capitalize())
-            other_response = requests.get("http://gn2.genenetwork.org/gn3/gene/aliases/" + self.symbol.lower())
+            human_response = requests.get(GN2_BASE_URL + "gn3/gene/aliases/" + self.symbol.upper())
+            mouse_response = requests.get(GN2_BASE_URL + "gn3/gene/aliases/" + self.symbol.capitalize())
+            other_response = requests.get(GN2_BASE_URL + "gn3/gene/aliases/" + self.symbol.lower())
 
             if human_response and mouse_response and other_response:
                 alias_list = json.loads(human_response.content) + json.loads(mouse_response.content) + json.loads(other_response.content)
-- 
cgit v1.2.3