From 51db16394ebe5936a2078293c676744b7ea74fc6 Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Thu, 7 Mar 2013 23:42:58 +0000
Subject: Progress bar is now completely working
Still need to figure out the problem that occurred
with negative p-values after I refactored the LMM
code
---
wqflask/base/data_set.py | 1 +
1 file changed, 1 insertion(+)
(limited to 'wqflask/base')
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index c6d67e68..d474302c 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -75,6 +75,7 @@ class Markers(object):
def add_pvalues(self, p_values):
for marker, p_value in itertools.izip(self.markers, p_values):
marker['p_value'] = p_value
+ print("p_value is:", marker['p_value'])
marker['lod_score'] = -math.log10(marker['p_value'])
#Using -log(p) for the LRS; need to ask Rob how he wants to get LRS from p-values
marker['lrs_value'] = -math.log10(marker['p_value']) * 4.61
--
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