From 3b047d589fa89ddd9aff852d4f2a00c580eb7243 Mon Sep 17 00:00:00 2001
From: Lei Yan
Date: Tue, 11 Jun 2013 23:24:38 +0000
Subject: Put trait info for correlation results page into a dictionary instead
 of storing list of GeneralTrait objects

Added print statements to track memory usage
---
 wqflask/base/data_set.py | 2 +-
 wqflask/base/trait.py    | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)

(limited to 'wqflask/base')

diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 4c5c46a5..0c7676c4 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -809,7 +809,7 @@ class MrnaAssayDataSet(DataSet):
                     this_trait.LRS_location_repr = 'Chr %s: %.4f Mb' % (lrs_chr, float(lrs_mb))
       
 
-    def convert_location_to_value(chromosome, mb):
+    def convert_location_to_value(self, chromosome, mb):
         try:
             location_value = int(chromosome)*1000 + float(mb)
         except ValueError:
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index 5fde114f..53f41779 100755
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -23,7 +23,7 @@ class GeneralTrait(object):
     """
 
     def __init__(self, **kw):
-        print("in GeneralTrait")
+        #print("in GeneralTrait")
         self.dataset = kw.get('dataset')           # database name
         self.name = kw.get('name')                 # Trait ID, ProbeSet ID, Published ID, etc.
         self.cellid = kw.get('cellid')
@@ -269,7 +269,7 @@ class GeneralTrait(object):
                            escape(self.dataset.name),
                            escape(self.name))
             traitInfo = g.db.execute(query).fetchone()
-            print("traitInfo is: ", pf(traitInfo))
+            #print("traitInfo is: ", pf(traitInfo))
         #XZ, 05/08/2009: We also should use Geno.Id to find marker instead of just using Geno.Name
         # to avoid the problem of same marker name from different species.
         elif self.dataset.type == 'Geno':
@@ -287,7 +287,7 @@ class GeneralTrait(object):
                            escape(self.dataset.name),
                            escape(self.name))
             traitInfo = g.db.execute(query).fetchone()
-            print("traitInfo is: ", pf(traitInfo))
+            #print("traitInfo is: ", pf(traitInfo))
         else: #Temp type
             query = """SELECT %s FROM %s WHERE Name = %s
                                      """ % (string.join(self.dataset.display_fields,','),
-- 
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