From 303e4b71c2172da5be19c84d4be5a062329ac013 Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Wed, 26 Aug 2020 19:12:33 +0300
Subject: Remove "from __future__ import new_feature" statements

See: <https://docs.python.org/2/library/2to3.html#2to3fixer-future>
---
 wqflask/base/species.py | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

(limited to 'wqflask/base/species.py')

diff --git a/wqflask/base/species.py b/wqflask/base/species.py
index 6d99af65..e3f1bc4a 100644
--- a/wqflask/base/species.py
+++ b/wqflask/base/species.py
@@ -1,5 +1,3 @@
-from __future__ import absolute_import, print_function, division
-
 import collections
 
 from flask import Flask, g
@@ -59,4 +57,4 @@ class Chromosomes(object):
         results = g.db.execute(query).fetchall()
 
         for item in results:
-            self.chromosomes[item.OrderId] = IndChromosome(item.Name, item.Length)
\ No newline at end of file
+            self.chromosomes[item.OrderId] = IndChromosome(item.Name, item.Length)
-- 
cgit v1.2.3


From 958972339e6c244ebedaf494bf43ca1eecabe6c4 Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Thu, 27 Aug 2020 01:22:14 +0300
Subject: Remove unused imports

---
 wqflask/base/mrna_assay_tissue_data.py                 | 1 -
 wqflask/base/species.py                                | 5 -----
 wqflask/runserver.py                                   | 9 ---------
 wqflask/wqflask/correlation_matrix/show_corr_matrix.py | 4 ----
 wqflask/wqflask/do_search.py                           | 2 +-
 wqflask/wqflask/network_graph/network_graph.py         | 5 -----
 6 files changed, 1 insertion(+), 25 deletions(-)

(limited to 'wqflask/base/species.py')

diff --git a/wqflask/base/mrna_assay_tissue_data.py b/wqflask/base/mrna_assay_tissue_data.py
index 33ce12bd..12f18f71 100644
--- a/wqflask/base/mrna_assay_tissue_data.py
+++ b/wqflask/base/mrna_assay_tissue_data.py
@@ -7,7 +7,6 @@ from utility import Bunch
 
 from MySQLdb import escape_string as escape
 
-from pprint import pformat as pf
 
 from utility.logger import getLogger
 logger = getLogger(__name__ )
diff --git a/wqflask/base/species.py b/wqflask/base/species.py
index e3f1bc4a..2771d116 100644
--- a/wqflask/base/species.py
+++ b/wqflask/base/species.py
@@ -2,11 +2,6 @@ import collections
 
 from flask import Flask, g
 
-#from MySQLdb import escape_string as escape
-
-from utility import Bunch
-
-from pprint import pformat as pf
 
 from utility.logger import getLogger
 logger = getLogger(__name__ )
diff --git a/wqflask/runserver.py b/wqflask/runserver.py
index 15572d97..58d79589 100644
--- a/wqflask/runserver.py
+++ b/wqflask/runserver.py
@@ -11,25 +11,16 @@ from wqflask import app
 
 
 import logging
-import utility.logger
-logger = utility.logger.getLogger(__name__ )
-
-import signal
-signal.signal(signal.SIGPIPE, signal.SIG_DFL)
 
 BLUE  = '\033[94m'
 GREEN = '\033[92m'
 BOLD  = '\033[1m'
 ENDC  = '\033[0m'
 
-from utility.startup_config import app_config
-
 app_config()
 
 werkzeug_logger = logging.getLogger('werkzeug')
 
-from utility.tools import WEBSERVER_MODE, SERVER_PORT
-
 if WEBSERVER_MODE == 'DEBUG':
     app.run(host='0.0.0.0',
             port=SERVER_PORT,
diff --git a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py
index 7b4bda31..dac4037e 100644
--- a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py
+++ b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py
@@ -47,10 +47,6 @@ import utility.webqtlUtil #this is for parallel computing only.
 from wqflask.correlation import correlation_functions
 from utility.benchmark import Bench
 
-from MySQLdb import escape_string as escape
-
-from pprint import pformat as pf
-
 from flask import Flask, g, url_for
 
 import utility.logger
diff --git a/wqflask/wqflask/do_search.py b/wqflask/wqflask/do_search.py
index de8e1e78..7e71f7d7 100644
--- a/wqflask/wqflask/do_search.py
+++ b/wqflask/wqflask/do_search.py
@@ -8,7 +8,6 @@ from MySQLdb import escape_string as escape
 from pprint import pformat as pf
 
 import sys
-# sys.path.append("..") Never in a running webserver
 
 from db import webqtlDatabaseFunction
 from utility.tools import GN2_BASE_URL
@@ -17,6 +16,7 @@ import logging
 from utility.logger import getLogger
 logger = getLogger(__name__)
 
+
 class DoSearch(object):
     """Parent class containing parameters/functions used for all searches"""
 
diff --git a/wqflask/wqflask/network_graph/network_graph.py b/wqflask/wqflask/network_graph/network_graph.py
index 70e5dd58..cfefe4ec 100644
--- a/wqflask/wqflask/network_graph/network_graph.py
+++ b/wqflask/wqflask/network_graph/network_graph.py
@@ -31,11 +31,6 @@ from utility.tools import GN2_BRANCH_URL
 from db import webqtlDatabaseFunction
 import utility.webqtlUtil #this is for parallel computing only.
 from wqflask.correlation import correlation_functions
-from utility.benchmark import Bench
-
-from MySQLdb import escape_string as escape
-
-from pprint import pformat as pf
 
 from flask import Flask, g
 
-- 
cgit v1.2.3