From d0911a04958a04042da02a334ccc528dae79cc17 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Fri, 27 Mar 2015 20:28:51 +0000
Subject: Removed everything from 'web' directory except genofiles and renamed
 the directory to 'genotype_files'

---
 web/webqtl/textUI/cmdGet.py | 86 ---------------------------------------------
 1 file changed, 86 deletions(-)
 delete mode 100755 web/webqtl/textUI/cmdGet.py

(limited to 'web/webqtl/textUI/cmdGet.py')

diff --git a/web/webqtl/textUI/cmdGet.py b/web/webqtl/textUI/cmdGet.py
deleted file mode 100755
index a11c97a3..00000000
--- a/web/webqtl/textUI/cmdGet.py
+++ /dev/null
@@ -1,86 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-import string
-
-from base import webqtlConfig
-from cmdClass import cmdClass
-
-#########################################
-#      Get trait value Class
-#########################################
-class cmdGet(cmdClass):
-	def __init__(self,fd=None):
-
-		cmdClass.__init__(self,fd)
-
-		if not webqtlConfig.TEXTUI:
-			self.contents.append("Please send your request to http://robot.genenetwork.org")
-			return
-
-		self.example = '###Example : <a href="%s%s?cmd=%s&probeset=100001_at&db=bra03-03Mas5&probe=all">%s%s?cmd=%s&probeset=100001_at&db=bra03-03Mas5&probe=all</a>' % (webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE, self.cmdID, webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE, self.cmdID)
-		if self.accessError:
-			return
-		if not self.error:
-			self.readDB()
-		else:
-			self.contents.append(self.example)
-			self.contents.append(self.accessCode)
-
-	def  readDB(self):
-		prefix, dbId = self.getDBId(self.database)
-		
-		traitdata, heads = self.getTraitData(prefix, dbId, self.probeset, self.probe)
-		try:	
-			if not traitdata:
-				raise ValueError
-			traitdata = heads + list(traitdata)
-			if self.format == 'col':
-				self.formatCols(traitdata)
-			else:
-				self.formatRows(traitdata)
-		except:
-			self.contents.append('Error: no record was found')
-			self.contents.append(self.accessCode)
-			return
-
-	def formatCols(self, traitdata):
-		for item in traitdata:
-			lines = []
-			for item2 in item:
-				lines.append(item2)
-			lines = string.join(map(str,lines), '\t')
-			self.contents.append(lines)
-			
-	def formatRows(self, traitdata):
-		for i in range(len(traitdata[0])):
-			lines = []
-			for j in range(len(traitdata)):
-				lines.append(traitdata[j][i])
-			lines = string.join(map(str,lines), '\t')
-			self.contents.append(lines)
-
-			
-- 
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