From d0911a04958a04042da02a334ccc528dae79cc17 Mon Sep 17 00:00:00 2001 From: zsloan Date: Fri, 27 Mar 2015 20:28:51 +0000 Subject: Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files' --- web/webqtl/misc/__init__.py | 0 web/webqtl/misc/editHtmlPage.py | 129 ----------------------------------- web/webqtl/misc/uploadFilePage.py | 137 -------------------------------------- 3 files changed, 266 deletions(-) delete mode 100755 web/webqtl/misc/__init__.py delete mode 100755 web/webqtl/misc/editHtmlPage.py delete mode 100755 web/webqtl/misc/uploadFilePage.py (limited to 'web/webqtl/misc') diff --git a/web/webqtl/misc/__init__.py b/web/webqtl/misc/__init__.py deleted file mode 100755 index e69de29b..00000000 diff --git a/web/webqtl/misc/editHtmlPage.py b/web/webqtl/misc/editHtmlPage.py deleted file mode 100755 index 68595b83..00000000 --- a/web/webqtl/misc/editHtmlPage.py +++ /dev/null @@ -1,129 +0,0 @@ -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# -# -# This module is used by GeneNetwork project (www.genenetwork.org) -# -# Created by GeneNetwork Core Team 2010/08/10 -# -# Last updated by GeneNetwork Core Team 2010/10/20 - -import string -import os -import urlparse - -from htmlgen import HTMLgen2 as HT - -from base.templatePage import templatePage -from base import webqtlConfig -from utility import webqtlUtil - - -######################################### -# Edit HTML Page -######################################### - -class editHtmlPage(templatePage): - htmlPath = webqtlConfig.ChangableHtmlPath - - def __init__(self, fd): - - templatePage.__init__(self, fd) - - self.templateInclude = 1 - self.dict['title'] = "Editing HTML" - - if not self.updMysql(): - return - - if webqtlConfig.USERDICT[self.privilege] >= webqtlConfig.USERDICT['user']: - pass - else: - heading = "Editing HTML" - detail = ["You don't have the permission to modify this file"] - self.error(heading=heading,detail=detail,error="Error") - return - - path = fd.formdata.getvalue('path') - preview = fd.formdata.getvalue('preview') - newHtmlCode = fd.formdata.getvalue('htmlSrc') - if newHtmlCode: - #newHtmlCode = string.replace(newHtmlCode, "&image", "&image") - newHtmlCode = string.replace(newHtmlCode,"&", "&") - if path and preview: - #preview - self.templateInclude = 0 - #print newHtmlCode - self.debug = newHtmlCode - elif path: - #edit result - fileName = self.htmlPath + path - newfileName = fileName +'.old' - os.system("/bin/cp -f %s %s" % (fileName, newfileName)) - fp = open(fileName, 'wb') - fp.write(newHtmlCode) - fp.close() - #print "chown qyh %s" % fileName - TD_LR = HT.TD(valign="top",colspan=2,bgcolor="#eeeeee", height=200) - mainTitle = HT.Paragraph("Edit HTML", Class="title") - url = HT.Href(text = "page", url =path, Class = "normal") - intro = HT.Blockquote("This ",url, " has been succesfully modified. ") - TD_LR.append(mainTitle, intro) - self.dict['body'] = TD_LR - #elif os.environ.has_key('HTTP_REFERER'): - elif fd.refURL: - #retrieve file to be edited - #refURL = os.environ['HTTP_REFERER'] - addressing_scheme, network_location, path, parameters, query, fragment_identifier = urlparse.urlparse(fd.refURL) - if path[-1] == "/": - path += 'index.html' - - fileName = self.htmlPath + path - try: - fp = open(fileName,'rb') - except: - fp = open(os.path.join(self.htmlPath, 'temp.html'),'rb') - htmlCode = fp.read() - #htmlCode = string.replace(htmlCode, " ","&nbsp") - htmlCode = string.replace(htmlCode, "&","&") - fp.close() - form = HT.Form(cgi= os.path.join(webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE), name='editHtml',submit=HT.Input(type='hidden')) - inputBox = HT.Textarea(name='htmlSrc', cols="100", rows=30,text=htmlCode) - - hddn = {'FormID':'editHtml', 'path':path, 'preview':''} - for key in hddn.keys(): - form.append(HT.Input(name=key, value=hddn[key], type='hidden')) - previewButton = HT.Input(type='button',name='previewhtml', value='Preview',Class="button", onClick= "editHTML(this.form, 'preview');") - submitButton = HT.Input(type='button',name='submitchange', value='Submit Change',Class="button", onClick= "editHTML(this.form, 'submit');") - resetButton = HT.Input(type='reset',Class="button") - form.append(HT.Center(inputBox, HT.P(), previewButton, submitButton, resetButton)) - - TD_LR = HT.TD(valign="top",colspan=2,bgcolor="#eeeeee") - mainTitle = HT.Paragraph("Edit HTML", Class="title") - intro = HT.Blockquote("You may edit the HTML source code in the editbox below, or you can copy the content of the editbox to your favorite HTML editor. ") - imgUpload = HT.Href(url="javascript:openNewWin('/upload.html', 'menubar=0,toolbar=0,location=0,resizable=0,status=1,scrollbars=1,height=400, width=600');", text="here", Class="fs14") - intro2 = HT.Blockquote("Click ", imgUpload, " to upload Images. ") - TD_LR.append(mainTitle, intro, intro2, HT.Center(form)) - self.dict['body'] = TD_LR - else: - heading = "Editing HTML" - detail = ["Error occured while trying to edit the html file."] - self.error(heading=heading,detail=detail,error="Error") - return - diff --git a/web/webqtl/misc/uploadFilePage.py b/web/webqtl/misc/uploadFilePage.py deleted file mode 100755 index da679910..00000000 --- a/web/webqtl/misc/uploadFilePage.py +++ /dev/null @@ -1,137 +0,0 @@ -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# -# -# This module is used by GeneNetwork project (www.genenetwork.org) -# -# Created by GeneNetwork Core Team 2010/08/10 -# -# Last updated by GeneNetwork Core Team 2010/10/20 - -import os -import string - -from htmlgen import HTMLgen2 as HT - -from base.templatePage import templatePage -from base import webqtlConfig -from utility import webqtlUtil - -######################################### -# Upload File Page -######################################### - -class uploadFilePage(templatePage): - - uploadPath = webqtlConfig.UPLOADPATH - - def __init__(self, fd, formdata, cookies): - - templatePage.__init__(self, fd) - - if not self.openMysql(): - return - - if webqtlConfig.USERDICT[self.privilege] >= webqtlConfig.USERDICT['user']: - pass - else: - heading = "Upload File" - detail = ["You don't have the permission to upload file to the server."] - self.error(heading=heading,detail=detail) - return - - self.cursor.close() - - file1 = self.save_uploaded_file (formdata, 'imgName1') - file2 = self.save_uploaded_file (formdata, 'imgName2') - file3 = self.save_uploaded_file (formdata, 'imgName3') - file4 = self.save_uploaded_file (formdata, 'imgName4') - file5 = self.save_uploaded_file (formdata, 'imgName5') - - i = 0 - uploaded = [] - - for filename in (file1, file2, file3, file4, file5): - if filename: - i += 1 - uploaded.append(filename) - - if i == 0: - heading = "Upload File" - detail = ["No file was selected, no file uploaded."] - self.error(heading=heading,detail=detail) - return - else: - TD_LR = HT.TD(height=200,width="100%",bgColor='#eeeeee') - - imgTbl = HT.TableLite(border=0, width = "90%",cellspacing=2, cellpadding=2, align="Center") - imgTbl.append(HT.TR(HT.TD("Thumbnail", width="%30", align='center',Class="colorBlue"), - HT.TD("URL", width="%60",Class="colorBlue", align='center'))) - for item in uploaded: - img = HT.Image("/images/upload/" + item, border = 0, width=80) - - #url = "%s/images/upload/" % webqtlConfig.PORTADDR + item - #url = HT.Href(text=url, url = url, Class='normalsize', target="_blank") - url2 = "/images/upload/" + item - url2 = HT.Href(text=url2, url = url2, Class='normalsize', target="_blank") - imgTbl.append(HT.TR(HT.TD(img, width="%30", align='center',Class="colorWhite"), - #HT.TD(url, HT.BR(), 'OR', HT.BR(), url2, width="%60",Class="colorWhite", align='center'))) - HT.TD(url2, width="%60",Class="colorWhite", align='center'))) - - intro = HT.Paragraph('A total of %d files are uploaded' % i) - TD_LR.append( HT.Center(intro) ) - - TD_LR.append( imgTbl ) - - self.dict['body'] = str(TD_LR) - - def save_uploaded_file(self, form, form_field, upload_dir=""): - if not upload_dir: - upload_dir = self.uploadPath - if not form.has_key(form_field): - return None - fileitem = form[form_field] - - if not fileitem.filename or not fileitem.file: - return None - - seqs = [""] + range(200) - try: - newfileName = string.split(fileitem.filename, ".") - for seq in seqs: - newfileName2 = newfileName[:] - if seq != "": - newfileName2[-2] = "%s-%s" % (newfileName2[-2], seq) - fileExist = glob.glob(os.path.join(upload_dir, string.join(newfileName2, "."))) - if not fileExist: - break - except: - pass - - newfileName = string.join(newfileName2, ".") - #print [newfileName, os.path.join(upload_dir, newfileName)] - #return - - fout = file (os.path.join(upload_dir, newfileName), 'wb') - while 1: - chunk = fileitem.file.read(100000) - if not chunk: break - fout.write (chunk) - fout.close() - return newfileName -- cgit v1.2.3