From ea46f42ee640928b92947bfb204c41a482d80937 Mon Sep 17 00:00:00 2001
From: root
Date: Tue, 8 May 2012 18:39:56 -0500
Subject: Add all the source codes into the github.
---
web/webqtl/maintainance/checkInfoFile.py | 102 +++++++++++++++++++++++++++++++
1 file changed, 102 insertions(+)
create mode 100755 web/webqtl/maintainance/checkInfoFile.py
(limited to 'web/webqtl/maintainance/checkInfoFile.py')
diff --git a/web/webqtl/maintainance/checkInfoFile.py b/web/webqtl/maintainance/checkInfoFile.py
new file mode 100755
index 00000000..6aa0d771
--- /dev/null
+++ b/web/webqtl/maintainance/checkInfoFile.py
@@ -0,0 +1,102 @@
+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by NL 2011/01/28
+
+# created by Ning Liu 2011/01/27
+# This script is to check whether dataset related Info file exist or not; if not, the tempate Info file will be generated
+# This script should be only run at GeneNetwork production server
+
+import sys, os
+import MySQLdb
+
+current_file_name = __file__
+pathname = os.path.dirname( current_file_name )
+abs_path = os.path.abspath(pathname)
+sys.path.insert(0, abs_path + '/..')
+
+from base import template
+from base import webqtlConfig
+from base import header
+from base import footer
+
+# build MySql database connection
+con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER, user=webqtlConfig.DB_USER,passwd=webqtlConfig.DB_PASSWD)
+cursor = con.cursor()
+
+InfoFilePath =webqtlConfig.HTMLPATH+'dbdoc/'
+
+# create template for Info file
+def createTemplateForInfoFile(datasetId=None,datasetFullName=None,InfoFileURL=None):
+ #template.py has been changed with dynamic header and footer
+ userInfo=""
+ headerInfo=header.header_string % userInfo
+ serverInfo=""
+ footerInfo=footer.footer_string % serverInfo
+
+ title =datasetFullName
+ contentTitle = '''
+ %s
+ ''' % datasetFullName
+ content ='''
+ Accession number: GN%s
+
+ This page will be updated soon.
+
+ ''' % (datasetId,datasetId)
+
+ body=contentTitle+content
+ # Note: 'templateParameters' includes parameters required for template.py
+ # templateParameters = ['title','basehref','js1','js2','layer','header','body', 'footer']
+ templateParameters =[title,'','','','',headerInfo,body,footerInfo]
+
+ # build template file
+ templateFile=template.template % tuple(templateParameters)
+ InfoFileHandler = open(InfoFileURL, 'w')
+ # write template file into Info .html file
+ InfoFileHandler.write(templateFile)
+ InfoFileHandler.close()
+
+
+# select all ProbeSet names from datatable 'ProbeSetFreeze'
+cursor.execute("select Id, Name, FullName from ProbeSetFreeze ")
+results = cursor.fetchall()
+for item in results:
+ datasetId = item[0]
+ datasetName =item[1]
+ datasetFullName =item[2]
+ InfoFileURL = InfoFilePath+datasetName+".html"
+ # check Info html file exist or not
+ if not os.path.exists(InfoFileURL):
+ createTemplateForInfoFile(datasetId=datasetId,datasetFullName=datasetFullName,InfoFileURL=InfoFileURL)
+
+
+
+
+
+
+
+
+
+
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