From d0911a04958a04042da02a334ccc528dae79cc17 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Fri, 27 Mar 2015 20:28:51 +0000
Subject: Removed everything from 'web' directory except genofiles and renamed
the directory to 'genotype_files'
---
web/webqtl/maintainance/checkInfoFile.py | 102 -------------------------------
1 file changed, 102 deletions(-)
delete mode 100755 web/webqtl/maintainance/checkInfoFile.py
(limited to 'web/webqtl/maintainance/checkInfoFile.py')
diff --git a/web/webqtl/maintainance/checkInfoFile.py b/web/webqtl/maintainance/checkInfoFile.py
deleted file mode 100755
index 6aa0d771..00000000
--- a/web/webqtl/maintainance/checkInfoFile.py
+++ /dev/null
@@ -1,102 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by NL 2011/01/28
-
-# created by Ning Liu 2011/01/27
-# This script is to check whether dataset related Info file exist or not; if not, the tempate Info file will be generated
-# This script should be only run at GeneNetwork production server
-
-import sys, os
-import MySQLdb
-
-current_file_name = __file__
-pathname = os.path.dirname( current_file_name )
-abs_path = os.path.abspath(pathname)
-sys.path.insert(0, abs_path + '/..')
-
-from base import template
-from base import webqtlConfig
-from base import header
-from base import footer
-
-# build MySql database connection
-con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER, user=webqtlConfig.DB_USER,passwd=webqtlConfig.DB_PASSWD)
-cursor = con.cursor()
-
-InfoFilePath =webqtlConfig.HTMLPATH+'dbdoc/'
-
-# create template for Info file
-def createTemplateForInfoFile(datasetId=None,datasetFullName=None,InfoFileURL=None):
- #template.py has been changed with dynamic header and footer
- userInfo=""
- headerInfo=header.header_string % userInfo
- serverInfo=""
- footerInfo=footer.footer_string % serverInfo
-
- title =datasetFullName
- contentTitle = '''
- %s
- ''' % datasetFullName
- content ='''
- Accession number: GN%s
-
- This page will be updated soon.
-
- ''' % (datasetId,datasetId)
-
- body=contentTitle+content
- # Note: 'templateParameters' includes parameters required for template.py
- # templateParameters = ['title','basehref','js1','js2','layer','header','body', 'footer']
- templateParameters =[title,'','','','',headerInfo,body,footerInfo]
-
- # build template file
- templateFile=template.template % tuple(templateParameters)
- InfoFileHandler = open(InfoFileURL, 'w')
- # write template file into Info .html file
- InfoFileHandler.write(templateFile)
- InfoFileHandler.close()
-
-
-# select all ProbeSet names from datatable 'ProbeSetFreeze'
-cursor.execute("select Id, Name, FullName from ProbeSetFreeze ")
-results = cursor.fetchall()
-for item in results:
- datasetId = item[0]
- datasetName =item[1]
- datasetFullName =item[2]
- InfoFileURL = InfoFilePath+datasetName+".html"
- # check Info html file exist or not
- if not os.path.exists(InfoFileURL):
- createTemplateForInfoFile(datasetId=datasetId,datasetFullName=datasetFullName,InfoFileURL=InfoFileURL)
-
-
-
-
-
-
-
-
-
-
--
cgit 1.4.1