From d0911a04958a04042da02a334ccc528dae79cc17 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Fri, 27 Mar 2015 20:28:51 +0000
Subject: Removed everything from 'web' directory except genofiles and renamed
 the directory to 'genotype_files'

---
 web/webqtl/externalResource/GCATPage.py | 101 --------------------------------
 1 file changed, 101 deletions(-)
 delete mode 100755 web/webqtl/externalResource/GCATPage.py

(limited to 'web/webqtl/externalResource/GCATPage.py')

diff --git a/web/webqtl/externalResource/GCATPage.py b/web/webqtl/externalResource/GCATPage.py
deleted file mode 100755
index 7e22f168..00000000
--- a/web/webqtl/externalResource/GCATPage.py
+++ /dev/null
@@ -1,101 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-#GCATPage.py
-
-from htmlgen import HTMLgen2 as HT
-
-from base.webqtlTrait import webqtlTrait
-from base.templatePage import templatePage
-    
-
-#Implemented by Xiaodong
-class GCATPage(templatePage):
-
-    def __init__(self,fd):
-
-        self.theseTraits = []
-        TD_LR = HT.TD(height=200,width="100%",bgColor='#eeeeee',valign="middle")
-
-        templatePage.__init__(self, fd)
-
-        if not self.openMysql():
-            return
-
-        self.searchResult = fd.formdata.getvalue('searchResult', [])
-        if type("1") == type(self.searchResult):
-            self.searchResult = [self.searchResult]
-
-        for item in self.searchResult:
-            try:
-                thisTrait = webqtlTrait(fullname=item, cursor=self.cursor)
-                thisTrait.retrieveInfo(QTL=1)
-                if thisTrait.db.type == "ProbeSet":
-                    self.theseTraits.append(thisTrait)
-            except:
-                pass
-
-        if self.theseTraits:
-            pass
-        else:
-            templatePage.__init__(self, fd)
-            heading = 'GCAT'
-            detail = ['You need to select at least one microarray trait to submit to GCAT.']
-            self.error(heading=heading,detail=detail)
-            return
-
-        geneSymbolList = self.getGeneSymbolList()
-
-        geneSymbolSet = set(geneSymbolList)
-
-        if ( len(geneSymbolSet) < 500 ):
-            temp = '+'.join(geneSymbolSet)
-            GCATurl = "http://binf1.memphis.edu/gcat/?organism=mouse&subset=all&year=2010&geneInput=%s" % temp
-
-            self.dict['js1'] = """
-                <SCRIPT LANGUAGE="JavaScript">
-                setTimeout( 'window.location = "%s"', 2000 );
-                </SCRIPT>
-            """ % GCATurl
-
-            TD_LR.append(HT.Paragraph("Your selection of %d genes is being submitted to GCAT" % len(geneSymbolSet), Class="cr fs16 fwb", align="Center"))
-        else:
-            TD_LR.append(HT.Paragraph("Your selection of %d genes exceeds the limit of 500. Please reduce your gene number to below the limit." % len(geneSymbolSet), Class="cr fs16 fwb", align="Center"))
-
-
-        self.dict['body'] = TD_LR
-
-
-    def getGeneSymbolList(self):
-        geneList = []
-
-        for item in self.theseTraits:
-            item.retrieveInfo()
-            geneList.append(str(item.symbol))
-		
-        return geneList
-
-                 
-- 
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