From d0911a04958a04042da02a334ccc528dae79cc17 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Fri, 27 Mar 2015 20:28:51 +0000
Subject: Removed everything from 'web' directory except genofiles and renamed
 the directory to 'genotype_files'

---
 web/webqtl/dataSharing/SharingInfo.py | 98 -----------------------------------
 1 file changed, 98 deletions(-)
 delete mode 100755 web/webqtl/dataSharing/SharingInfo.py

(limited to 'web/webqtl/dataSharing/SharingInfo.py')

diff --git a/web/webqtl/dataSharing/SharingInfo.py b/web/webqtl/dataSharing/SharingInfo.py
deleted file mode 100755
index 10abcefa..00000000
--- a/web/webqtl/dataSharing/SharingInfo.py
+++ /dev/null
@@ -1,98 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-import httplib
-
-from dbFunction import webqtlDatabaseFunction
-import SharingBody
-
-
-#########################################
-#      Sharing Info
-#########################################
-class SharingInfo:
-
-		def __init__(self, GN_AccessionId, InfoPageName):
-				self.GN_AccessionId = GN_AccessionId
-				self.InfoPageName = InfoPageName
-
-		def getInfo(self):
-				cursor = webqtlDatabaseFunction.getCursor()
-				if (not cursor):
-						return
-				sql = "select Id, GEO_Series, Status, Title, Organism, Experiment_Type, Summary, Overall_Design, Contributor, Citation, Submission_Date, Contact_Name, Emails, Phone, URL, Organization_Name, Department, Laboratory, Street, City, State, ZIP, Country, Platforms, Samples, Species, Normalization, InbredSet, InfoPageName, DB_Name, Organism_Id, InfoPageTitle, GN_AccesionId, Tissue, AuthorizedUsers, About_Cases, About_Tissue, About_Download, About_Array_Platform, About_Data_Values_Processing, Data_Source_Acknowledge, Progreso from InfoFiles where "
-				if(self.GN_AccessionId):
-						sql += "GN_AccesionId = %s"
-						cursor.execute(sql, self.GN_AccessionId)
-				elif (self.InfoPageName):
-						sql += "InfoPageName = %s"
-						cursor.execute(sql, self.InfoPageName)
-				else:
-						raise 'No correct parameter found'
-				info = cursor.fetchone()
-				# fetch datasets file list
-				try:
-					conn = httplib.HTTPConnection("atlas.uthsc.edu")
-					conn.request("GET", "/scandatasets.php?GN_AccesionId=%s" % (info[32]))
-					response = conn.getresponse()
-					data = response.read()
-					filelist = data.split()
-					conn.close()
-				except Exception:
-					filelist = []
-				return info, filelist
-				
-		def getBody(self, infoupdate=""):
-				info, filelist = self.getInfo()
-				if filelist:
-					htmlfilelist = '<ul style="line-height:160%;">\n'
-					for i in range(len(filelist)):
-							if i%2==0:
-									filename = filelist[i]
-									filesize = filelist[i+1]
-									htmlfilelist += "<li>"
-									htmlfilelist += '<a href="ftp://atlas.uthsc.edu/users/shared/Genenetwork/GN%s/%s">%s</a>' % (self.GN_AccessionId, filename, filename)
-									htmlfilelist += '&nbsp;&nbsp;&nbsp;'
-									#r=re.compile(r'(?<=\d)(?=(\d\d\d)+(?!\d))')
-									#htmlfilelist += '[%s&nbsp;B]' % r.sub(r',',filesize)
-									if 12<len(filesize):
-										filesize=filesize[0:-12]
-										filesize += ' T'
-									elif 9<len(filesize):
-										filesize=filesize[0:-9]
-										filesize += ' G'
-									elif 6<len(filesize):
-										filesize=filesize[0:-6]
-										filesize += ' M'
-									elif 3<len(filesize):
-										filesize=filesize[0:-3]
-										filesize += ' K'
-									htmlfilelist += '[%sB]' % filesize
-									htmlfilelist += "</li>\n"
-					htmlfilelist += "</ul>"
-				else:
-					htmlfilelist = "Data sets are not available or are not public yet."
-				return SharingBody.sharinginfo_body_string % (info[31], info[32], infoupdate, info[32], info[1], info[3], info[30], info[4], info[27], info[33], info[2], info[23], info[26], info[11], info[15], info[16], info[18], info[19], info[20], info[21], info[22], info[13], info[12], info[14], info[14], htmlfilelist, info[6], info[35], info[36], info[37], info[38], info[39], info[40], info[5], info[7], info[8], info[9], info[10], info[17], info[24])
-- 
cgit 1.4.1