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+ Select and Search
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+ ______________________________________________________
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+Quick HELP Examples and
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+ User's Guide
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+ You can also use advanced commands. Copy these simple examples
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into the Get Any or Combined search fields:
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+- POSITION=(chr1 25 30) finds genes, markers, or transcripts on chromosome 1 between 25 and 30 Mb.
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- MEAN=(15 16) LRS=(23 46) in the Combined field finds highly expressed genes (15 to 16 log2 units) AND with peak LRS linkage between 23 and 46.
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- RIF=mitochondrial searches RNA databases for GeneRIF links.
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- WIKI=nicotine searches GeneWiki for genes that you or other users have annotated with the word nicotine.
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- GO:0045202 searches for synapse-associated genes listed in the Gene Ontology.
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- GO:0045202 LRS=(9 99 Chr4 122 155) cisLRS=(9 999 10)
in Combined finds synapse-associated genes with cis eQTL on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999.
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+ - RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)
in Combined finds diabetes-associated transcripts with peak trans eQTLs on Chr 2 between 100 and 105 Mb with LRS scores between 9 and 999.
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+ Top New Features
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+ RNA-seq and Whole-Genome Sequencing data for mouse BXD strains and DBA/2J.
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+ CITG Open Galaxy Service: 200-core cluster at UTHSC for next-gen sequence analysis.
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+
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+ ____________________________
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+
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+ Getting Started
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+ - Select Species (or select All)
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- Select Group (a specific sample)
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- Select Type of data:
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+ - Phenotype (traits)
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- Genotype (markers)
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- Expression (mRNAs)
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+ - Select a Database
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- Enter search terms in the Get Any or Combined field: words, genes, ID numbers, probes, advanced search commands
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- Click on the Search button
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- Optional: Use the Make Default button to save your preferences
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+ ____________________________
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+ How to Use GeneNetwork
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+ Take a 20-40 minute GeneNetwork Tour that includes screen shots and typical steps in the analysis.
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+ For information about resources and methods, select the  buttons.
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+Try the Test site to explore data and features that are being implemented.
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+Review the Conditions and Contacts pages for information on the status of data sets and advice on their use and citation.
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+ Mirror and Development Sites
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+ History and Archive
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+ GeneNetwork's Time Machine links to earlier versions that correspond to specific publication dates.
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