From d0911a04958a04042da02a334ccc528dae79cc17 Mon Sep 17 00:00:00 2001 From: zsloan Date: Fri, 27 Mar 2015 20:28:51 +0000 Subject: Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files' --- web/index.html.20110408 | 367 ------------------------------------------------ 1 file changed, 367 deletions(-) delete mode 100755 web/index.html.20110408 (limited to 'web/index.html.20110408') diff --git a/web/index.html.20110408 b/web/index.html.20110408 deleted file mode 100755 index bcae525b..00000000 --- a/web/index.html.20110408 +++ /dev/null @@ -1,367 +0,0 @@ - - -GeneNetwork Search - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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Select and Search -

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    Databases marked with ** suffix are not public yet. -
    Access requires user login.

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- Get Any: - - - -
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    Enter terms, genes, ID numbers in the Get Any field. -
    Use * or ? wildcards (Cyp*a?, synap*). -
    Use Combined for terms such as tyrosine kinase.

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  - -Quick HELP Examples and - - User's Guide

- - - -  You can also use advanced commands. Copy these simple examples -
  into the Get Any or Combined search fields: -
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  • POSITION=(chr1 25 30) finds genes, markers, or transcripts on chromosome 1 between 25 and 30 Mb. - -
  • MEAN=(15 16) LRS=(23 46) in the Combined field finds highly expressed genes (15 to 16 log2 units) AND with peak LRS linkage between 23 and 46. - -
  • RIF=mitochondrial searches RNA databases for GeneRIF links. - -
  • WIKI=nicotine searches GeneWiki for genes that you or other users have annotated with the word nicotine. - -
  • GO:0045202 searches for synapse-associated genes listed in the Gene Ontology. - -
  • GO:0045202 LRS=(9 99 Chr4 122 155) cisLRS=(9 999 10)
    in Combined finds synapse-associated genes with cis eQTL on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999. - -
  • RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)
    in Combined finds diabetes-associated transcripts with peak trans eQTLs on Chr 2 between 100 and 105 Mb with LRS scores between 9 and 999. - -
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Top New Features   

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RNA-seq and Whole-Genome Sequencing data for mouse BXD strains and DBA/2J.

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CITG Open Galaxy Service: 200-core cluster at UTHSC for next-gen sequence analysis.

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Getting Started   

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  1. Select Species (or select All) -
  2. Select Group (a specific sample) -
  3. Select Type of data: -
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    • Phenotype (traits) -
    • Genotype (markers) -
    • Expression (mRNAs) -
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  4. Select a Database -
  5. Enter search terms in the Get Any or Combined field: words, genes, ID numbers, probes, advanced search commands -
  6. Click on the Search button -
  7. Optional: Use the Make Default button to save your preferences - -
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How to Use GeneNetwork - -

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Take a 20-40 minute GeneNetwork Tour that includes screen shots and typical steps in the analysis.

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For information about resources and methods, select the INFO buttons.

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Try the Test site to explore data and features that are being implemented.

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Review the Conditions and Contacts pages for information on the status of data sets and advice on their use and citation.

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Mirror and Development Sites

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History and Archive - -

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GeneNetwork's Time Machine links to earlier versions that correspond to specific publication dates.

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- - - modify this page

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