HQF BXD Striatum ILM6.1 (Dec10v2) RankInv

From d0911a04958a04042da02a334ccc528dae79cc17 Mon Sep 17 00:00:00 2001 From: zsloan Date: Fri, 27 Mar 2015 20:28:51 +0000 Subject: Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files' --- web/dbdoc/UTHSC_Striatum_RankInv_1210.html | 219 ----------------------------- 1 file changed, 219 deletions(-) delete mode 100755 web/dbdoc/UTHSC_Striatum_RankInv_1210.html (limited to 'web/dbdoc/UTHSC_Striatum_RankInv_1210.html') diff --git a/web/dbdoc/UTHSC_Striatum_RankInv_1210.html b/web/dbdoc/UTHSC_Striatum_RankInv_1210.html deleted file mode 100755 index 3aef085f..00000000 --- a/web/dbdoc/UTHSC_Striatum_RankInv_1210.html +++ /dev/null @@ -1,219 +0,0 @@ - -HQF BXD Striatum ILM6.1 (Dec10v2) RankInv - - - - - - - - - - - - - - - - - - - - - - - - - -

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HQF BXD Striatum ILM6.1 (Dec10v2) RankInv

- - Accession number: GN285

NOTE: The data from the HQF BXD Striatum Illumina Mouse-6.1 November 2007 Rank Invariant Data Set were corrected for a batch effect due to the hybridization of different strains on different dates. This data was adjusted to correct for batch effects due to date, slide, and position (see table below). Data from individual samples was adjusted using ANOVA to remove effect of batch (factor = date, factor= slide, factor = position) in Partek Batch Remover. Batch effects were corrected by sequentially removing the effect of (1) date, (2) slide, and (3) position. The first 3 principal components capture 15-16% of the variance in the entire data set after this correction.

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Index	Slide	Position	Strain	Tissue	Age	Sex	Date
1	1736925204	D	C57BL/6J	Striatum	58	F	6.7.07
2	1736925140	D	C57BL/6J	Striatum	61	M	6.12.07
3	1736925204	E	DBA/2J	Striatum	58	F	6.7.07
4	1736925140	E	DBA/2J	Striatum	60	M	6.12.07
5	1736925140	A	B6D2F1/J	Striatum	59	F	6.12.07
6	1736925204	A	B6D2F1/J	Striatum	59	M	6.7.07
7	1736925225	A	BXD1	Striatum	59	F	6.21.07
8	1716756015	A	BXD1	Striatum	59	M	6.22.07
9	1736925169	A	BXD2	Striatum	61	F	6.21.07
10	1716756027	A	BXD2	Striatum	61	M	6.22.07
11	1716756004	C	BXD5	Striatum	58	F	6.22.07
12	1716756036	C	BXD5	Striatum	58	M	6.28.07
13	1716756004	D	BXD6	Striatum	59	F	6.22.07
14	1716756036	D	BXD6	Striatum	59	M	6.28.07
15	1716756004	E	BXD8	Striatum	61	F	6.22.07
16	1716756036	E	BXD8	Striatum	61	M	6.28.07
17	1716756004	F	BXD9	Striatum	60	F	6.22.07
18	1716756036	F	BXD9	Striatum	60	M	6.28.07
19	1736925139	C	BXD11	Striatum	59	F	6.12.07
20	1716756045	B	BXD11	Striatum	59	M	6.28.07
21	1736925225	B	BXD12	Striatum	62	F	6.21.07
22	1716756015	B	BXD12	Striatum	59	M	6.22.07
23	1736925225	C	BXD13	Striatum	60	F	6.21.07
24	1716756015	C	BXD13	Striatum	60	M	6.22.07
25	1716756045	C	BXD14	Striatum	59	F	6.28.07
26	1736925351	C	BXD14	Striatum	60	M	6.15.07
27	1736925225	D	BXD15	Striatum	60	F	6.21.07
28	1716756015	D	BXD15	Striatum	60	M	6.22.07
29	1736925140	B	BXD16	Striatum	58	F	6.12.07
30	1736925204	B	BXD16	Striatum	60	M	6.7.07
31	1736925225	E	BXD18	Striatum	59	F	6.21.07
32	1716756015	E	BXD18	Striatum	59	M	6.22.07
33	1736925225	F	BXD19	Striatum	60	F	6.21.07
34	1716756015	F	BXD19	Striatum	60	M	6.22.07
35	1716756045	D	BXD20	Striatum	60	F	6.28.07
36	1736925139	D	BXD20	Striatum	60	M	6.12.07
37	1736925169	B	BXD21	Striatum	48	F	6.21.07
38	1716756027	B	BXD21	Striatum	48	M	6.22.07
39	1736925351	D	BXD22	Striatum	60	F	6.15.07
40	1716756045	E	BXD22	Striatum	60	M	6.28.07
41	1736925169	C	BXD23	Striatum	60	F	6.21.07
42	1716756027	C	BXD23	Striatum	60	M	6.22.07
43	1736925140	C	BXD24b	Striatum	58	F	6.12.07
44	1736925204	C	BXD24b	Striatum	58	M	6.7.07
45	1736925169	D	BXD27	Striatum	60	F	6.21.07
46	1716756027	D	BXD27	Striatum	60	M	6.22.07
47	1736925169	E	BXD28	Striatum	60	F	6.21.07
48	1716756027	E	BXD28	Striatum	60	M	6.22.07
49	1736925169	F	BXD29	Striatum	58	F	6.21.07
50	1716756027	F	BXD29	Striatum	58	M	6.22.07
51	1736925171	A	BxD31	Striatum	60	F	6.21.07
52	1716756034	A	BxD31	Striatum	60	M	6.28.07
53	1736925171	B	BXD32	Striatum	57	F	6.21.07
54	1716756034	B	BXD32	Striatum	57	M	6.28.07
55	1736925171	C	BXD33	Striatum	59	F	6.21.07
56	1716756034	C	BXD33	Striatum	59	M	6.28.07
57	1736925171	D	BXD34	Striatum	60	F	6.21.07
58	1716756034	D	BXD34	Striatum	60	M	6.28.07
59	1736925171	E	BXD36	Striatum	57	F	6.21.07
60	1716756034	E	BXD36	Striatum	57	M	6.28.07
61	1736925171	F	BXD38	Striatum	60	F	6.21.07
62	1716756034	F	BXD38	Striatum	60	M	6.28.07
63	1716756004	A	BXD40	Striatum	60	F	6.22.07
64	1716756036	A	BXD40	Striatum	60	M	6.28.07
65	1716756004	B	BXD42	Striatum	58	F	6.22.07
66	1716756036	B	BXD42	Striatum	58	M	6.28.07
67	1736925339	E	BXD43	Striatum	53	F	7.3.07
68	1736925339	F	BXD44	Striatum	56	M	7.3.07
69	1736925300	A	BXD45	Striatum	60	F	7.6.07
70	1825397020	D	BXD45	Striatum	63	M	7.10.07
71	1736925300	B	BXD51	Striatum	66	F	7.6.07
72	1825397020	E	BXD51	Striatum	64	M	7.10.07
73	1825397020	F	BXD55	Striatum	55	F	7.10.07
74	1736925300	C	BXD55	Striatum	55	M	7.6.07
75	1736925300	D	BXD60	Striatum	61	F	7.6.07
76	1825397021	A	BXD60	Striatum	61	M	7.10.07
77	1736925300	E	BXD61	Striatum	62	F	7.6.07
78	1825397021	B	BXD61	Striatum	62	M	7.10.07
79	1736925300	F	BXD62	Striatum	62	F	7.6.07
80	1825397021	C	BXD62	Striatum	63	M	7.10.07
81	1825397021	E	BXD65	Striatum	62	M	7.10.07
82	1736925245	B	BXD66	Striatum	59	M	7.3.07
83	1736925245	C	BXD68	Striatum	56	F	7.3.07
84	1736925245	D	BXD69	Striatum	65	M	7.3.07
85	1736925245	E	BXD70	Striatum	61	M	7.3.07
86	1736925339	A	BXD73	Striatum	62	F	7.3.07
87	1736925292	A	BXD73	Striatum	50	M	7.6.07
88	1736925292	D	BXD77	Striatum	50	F	7.6.07
89	1736925339	B	BXD84	Striatum	55	F	7.3.07
90	1736925292	B	BXD84	Striatum	55	M	7.6.07
91	1736925292	E	BXD85	Striatum	57	M	7.6.07
92	1736925292	F	BXD86	Striatum	58	M	7.6.07
93	1736925299	A	BXD87	Striatum	31	M	7.6.07
94	1736925299	B	BXD89	Striatum	63	M	7.6.07
95	1736925299	C	BXD90	Striatum	66	M	7.6.07
96	1736925292	C	BXD96	Striatum	61	F	7.6.07
97	1736925339	C	BXD96	Striatum	61	M	7.3.07
98	1736925299	D	BXD97	Striatum	61	M	7.6.07
99	1736925339	D	BXD100	Striatum	61	F	7.3.07
100	1736925140	F	129S1/SvImJ	Striatum	60	F	6.12.07
101	1736925204	F	129S1/SvImJ	Striatum	59	M	6.7.07
102	1736925129	A	A/J	Striatum	59	F	6.7.07
103	1736925241	A	A/J	Striatum	59	M	6.12.07
104	1736925129	B	AKR/J	Striatum	59	F	6.7.07
105	1736925241	B	AKR/J	Striatum	59	M	6.12.07
106	1736925241	C	BALB/CByJ	Striatum	59	F	6.12.07
107	1736925129	C	BALB/CByJ	Striatum	59	M	6.7.07
108	1716756045	A	BTBRT+tf/J	Striatum	59	F	6.28.07
109	1736925139	E	BTBRT+tf/J	Striatum	60	M	6.12.07
110	1716756045	F	BXSB/MpJ	Striatum	61	F	6.28.07
111	1736925351	E	BXSB/MpJ	Striatum	61	M	6.15.07
112	1736925129	D	C3H/HeJ	Striatum	60	F	6.7.07
113	1736925241	D	C3H/HeJ	Striatum	60	M	6.12.07
114	1736925129	E	CAST/Ei	Striatum	57	F	6.7.07
115	1736925241	E	CAST/Ei	Striatum	61	M	6.12.07
116	1736925129	F	FVB/NJ	Striatum	60	F	6.7.07
117	1736925241	F	FVB/NJ	Striatum	60	M	6.12.07
118	1716756057	A	KK/HiJ	Striatum	62	F	6.7.07
119	1736925303	A	KK/HiJ	Striatum	62	F	6.15.07
120	1716756057	B	MOLF/EiJ	Striatum	60	F	6.7.07
121	1736925303	B	MOLF/EiJ	Striatum	60	M	6.15.07
122	1716756057	D	NOD/LtJ	Striatum	58	F	6.7.07
123	1736925303	C	NOD/LtJ	Striatum	58	M	6.15.07
124	1736925303	D	NZB/BlnJ	Striatum	61	F	6.15.07
125	1716756057	E	NZB/BlnJ	Striatum	58	M	6.7.07
126	1736925303	E	NZO/HiltJ	Striatum	61	F	6.15.07
127	1716756057	F	NZO/HiltJ	Striatum	61	M	6.7.07
128	1736925139	F	NZW/LacJ	Striatum	65	F	6.12.07
129	1825397021	D	NZW/LacJ	Striatum	70	M	7.10.07
130	1736925303	F	PWD/PhJ	Striatum	70	F	6.15.07
131	1716756057	C	PWD/PhJ	Striatum	70	M	6.7.07
132	1736925139	A	PWK/PhJ	Striatum	59	F	6.12.07
133	1736925351	A	PWK/PhJ	Striatum	60	M	6.15.07
134	1736925351	B	WSB/EiJ`	Striatum	71	F	6.15.07
135	1736925139	B	WSB/EiJ	Striatum	71	M	6.12.07

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