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-GenomeGraph is designed to help discover genetic sources of variation in trait and transcript expression at a global level. Choose a database and click on the Mapping button. The y-axis marks the physical locations of genes from which transcripts are synthesized. In contrast, the x-axis plots the locations of the highest LRS values associated with each trait or transcript; in essence, the location of the best QTL. The false discovery rate (FDR) can be tuned from 1 (all data shown) to values between 0.1 and 0.01 (only transcripts with significant QTLs shown).
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Note that many data set results are still being computed. You may encounter an "in progress" message.
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For a more complete explanation see Chesler, Lu and colleagues (2005), or the GenomeGraph Help page.
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