From 6be8ae8ba741c4822470f752f60d85fe54bd90f9 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 17 Jun 2016 05:55:02 +0000
Subject: Testing: getting tests to run quietly

---
 test/lib/NavigationTest.rb         | 17 ++++++++---------
 test/lib/link_checker.rb           |  2 +-
 test/lib/main_web_functionality.rb | 13 +++++++++----
 3 files changed, 18 insertions(+), 14 deletions(-)

(limited to 'test/lib')

diff --git a/test/lib/NavigationTest.rb b/test/lib/NavigationTest.rb
index 26080d28..676ee90c 100644
--- a/test/lib/NavigationTest.rb
+++ b/test/lib/NavigationTest.rb
@@ -1,5 +1,6 @@
 # In these tests we navigate from the main page to a specific trait then hit the different mapping tool buttons (In this case pylMM and r/qtl) followed by computing the results (marker regressions).
 
+
 class NavigationTest
 end
 
@@ -11,6 +12,7 @@ describe NavigationTest do
 
   describe NavigationTest do
     it "pyLMM mapping tool selection" do
+      break if $options[:skip_broken]
       page = @agent.get($host+'/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P')
 #Navigates to http://localhost:5003/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P and clicks respective buttons.
       link = page.link_with(text: 'pyLMM')
@@ -20,15 +22,14 @@ describe NavigationTest do
       page = link.click
       puts page.uri
       probe_link.uri.to_s.must_equal "/marker_regression"
-      
-       
-        end
-      end
+    end
+  end
 
 end
 
 describe NavigationTest do
     it "R/qtl mapping tool selection" do
+      break if $options[:skip_broken]
       page = @agent.get($host+'/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P')
       link = page.link_with(text: 'R/qtl')
       page = link.click
@@ -37,10 +38,8 @@ describe NavigationTest do
       link = page.link_with(text: 'Compute')
       page = link.click
       puts page.uri
-      probe_link.uri.to_s.must_equal "/marker_regression"
-      
-       
-        end
-      end
+      probe_link.uri.to_s.must_equal "/marker_regression" 
+    end
+end
 
 
diff --git a/test/lib/link_checker.rb b/test/lib/link_checker.rb
index fb201887..15449144 100644
--- a/test/lib/link_checker.rb
+++ b/test/lib/link_checker.rb
@@ -24,7 +24,7 @@ describe LinkChecker do
   describe LinkChecker do
     it "Get to trait page" do
       page = @agent.get($host+'/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P')
-      p page
+      # p page
 
       # Get to trait page for 1435395_s_at
       # form2 = show_trait_page.forms_with("trait_page")[0]
diff --git a/test/lib/main_web_functionality.rb b/test/lib/main_web_functionality.rb
index d0a32835..c74a601e 100644
--- a/test/lib/main_web_functionality.rb
+++ b/test/lib/main_web_functionality.rb
@@ -25,19 +25,24 @@ describe MainWebFunctionality do
       probe_link = search_page.links.find { |l| l.text =~ /1435395_s_at/ }
       probe_link.uri.to_s.must_equal "/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P"
       show_trait_page = probe_link.click
-      p show_trait_page
+      # p show_trait_page
 
       # Get to trait page for 1435395_s_at
       form2 = show_trait_page.forms_with("trait_page")[0]
-      form2.fields[30].name.must_equal  "variance:C57BL/6J"
+      if $options[:database] == :small
+        form2.fields[30].name.must_equal  "value:DBA/2J"
+      else
+        form2.fields[30].name.must_equal  "variance:C57BL/6J"
+      end
       # form2.fields[30].value.must_equal "15.287"
 
       # Test every link on the page to check if it's broken or not
+      break if not $options[:link_checker]
       show_trait_page.links.each do |link|
         puts link.href
         if link.href !~ /static\/dbdoc\/Hippocampus/ and link.href !~ /glossary.html|sample_r|grits.eecs.utk.edu|correlationAnnotation.html/
-           # Fetch link, program will crash with exception if link is broken
-           linkpage = @agent.get(link.href)
+          # Fetch link, program will crash with exception if link is broken
+          linkpage = @agent.get(link.href)
           puts "Link to #{link.href} is valid, response code #{linkpage.code}"
         end
       end
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