From 50a571110b6557e2b7dbc536893d3928f0a93bd2 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Mon, 26 Sep 2016 08:30:07 +0000
Subject: Mechanical Rob: make it possible to run single tests

---
 test/lib/gntest.rb  |  5 +++++
 test/lib/mapping.rb | 40 +++++-----------------------------------
 2 files changed, 10 insertions(+), 35 deletions(-)
 create mode 100644 test/lib/gntest.rb

(limited to 'test/lib')

diff --git a/test/lib/gntest.rb b/test/lib/gntest.rb
new file mode 100644
index 00000000..865ef51d
--- /dev/null
+++ b/test/lib/gntest.rb
@@ -0,0 +1,5 @@
+require 'minitest/autorun'
+require 'mechanize'
+
+# ---- Use some default parameters if not set
+$host = "http://localhost:5003" if !$host
diff --git a/test/lib/mapping.rb b/test/lib/mapping.rb
index 2678b127..47c4875b 100644
--- a/test/lib/mapping.rb
+++ b/test/lib/mapping.rb
@@ -1,18 +1,19 @@
 # In these tests we navigate from the main page to a specific trait then hit the different mapping tool buttons (In this case pylMM and r/qtl) followed by computing the results (marker regressions).
 
+require 'gntest'
+
 class MappingTest
 end
 
 describe MappingTest do
   before do
+    @agent = Mechanize.new
+    @agent.agent.http.ca_file = '/etc/ssl/certs/ca-certificates.crt'
   end
 
   describe MappingTest do
-    it "pyLMM mapping tool selection" do
+    it "R/qtl mapping tool selection" do
       url = $host+'/marker_regression' # ?trait_id=1435395_s_at&dataset=HC_M2_0606_P'
-      @agent = Mechanize.new
-      @agent.agent.http.ca_file = '/etc/ssl/certs/ca-certificates.crt'
-      # @agent.idle_timeout = 0.01
 
       json = JSON::load(File.read('test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json'))
       # p json
@@ -20,38 +21,7 @@ describe MappingTest do
                          json,
                          ({'Content-Type' => 'application/x-www-form-urlencoded'}))
       p page
-      # get the form
-      # form = @agent.page.form_with(:name => "my-form")
-      # get the button you want from the form
-      # page.forms.each do |form|
-      #   p form
-      # end
-      # button = page.button_with(:value => "pylmm_compute")
-      # submit the form using that button
-      # agent.submit(form, button)
-      # link = page.link_with(text: 'pyLMM')
-      # page = link.click
-      # puts page.uri
-      # link = page.link_with(text: 'Compute')
-      # page = link.click
-      # puts page.uri
-      # probe_link.uri.to_s.must_equal "/marker_regression"
     end
   end
 
 end
-
-describe MappingTest do
-    it "R/qtl mapping tool selection" do
-      break if $options[:skip_broken]
-      page = @agent.get($host+'/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P')
-      link = page.link_with(text: 'R/qtl')
-      page = link.click
-      puts page.uri
-      form.field_with(:name => 'Methods').options[2].select
-      link = page.link_with(text: 'Compute')
-      page = link.click
-      puts page.uri
-      probe_link.uri.to_s.must_equal "/marker_regression"
-    end
-end
-- 
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