From f8ea5626edffbe358215f8c31bc257c9c8b7be34 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Fri, 3 Jun 2022 19:31:42 +0000
Subject: Allow GenoFreezeId to be passed in configurations to
 load_genotypes.py

---
 scripts/maintenance/load_genotypes.py | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

(limited to 'scripts')

diff --git a/scripts/maintenance/load_genotypes.py b/scripts/maintenance/load_genotypes.py
index 51278d48..e3d594ab 100755
--- a/scripts/maintenance/load_genotypes.py
+++ b/scripts/maintenance/load_genotypes.py
@@ -15,7 +15,10 @@ def fetch_parameters(config):
     config_dic = {}
     config_dic['inbredsetid'] = config.get('config', 'inbredsetid')
     config_dic["speciesid"] = datastructure.get_species(config_dic['inbredsetid'])[0]
-    config_dic['genofreezeid'] = datastructure.get_genofreeze_byinbredsetid(config_dic['inbredsetid'])[0]
+    if config.has_option('config', 'genofreezeid'):
+        config_dic['genofreezeid'] = config.get('config', 'genofreezeid')
+    else:
+        config_dic['genofreezeid'] = datastructure.get_genofreeze_byinbredsetid(config_dic['inbredsetid'])[0]
     config_dic['dataid'] = datastructure.get_nextdataid_genotype()
     config_dic['genofile'] = config.get('config', 'genofile')
     print("config dictionary:")
-- 
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