From 89eedfc779bb169354ea02eaa322a56669ed78de Mon Sep 17 00:00:00 2001
From: Alexander_Kabui
Date: Mon, 23 Sep 2024 11:51:53 +0300
Subject: Refactor: run djlint for index page file.

---
 gn2/wqflask/templates/index_page.html | 569 +++++++++++++++++++++-------------
 1 file changed, 349 insertions(+), 220 deletions(-)

(limited to 'gn2')

diff --git a/gn2/wqflask/templates/index_page.html b/gn2/wqflask/templates/index_page.html
index 216e1c38..135c2921 100755
--- a/gn2/wqflask/templates/index_page.html
+++ b/gn2/wqflask/templates/index_page.html
@@ -1,23 +1,23 @@
 {% extends "base.html" %}
 {% block title %}GeneNetwork{% endblock %}
 {% block css %}
-<!-- UIkit CSS -->
-<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='uikit/css/uikit.min.css') }}"/>
-
-<link rel="stylesheet" href="/static/new/css/index_page.css" />
-<link rel="stylesheet" href="/static/new/css/autocomplete.css"/>
-
-<!-- UIkit JS -->
-<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='uikit/js/uikit.min.js') }}"></script>
-
-<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='uikit/js/uikit-icons.min.js') }}"></script>
-
-<!--locally built emfed package see source file:https://github.com/sampsyo/emfed -->
-<script type="module" src="static/new/javascript/emfed.bundle.js"></script>
-<link rel="stylesheet" type="text/css"
-    href="static/new/css/toots.css">
-<style TYPE="text/css">
-    
+    <!-- UIkit CSS -->
+    <link rel="stylesheet"
+          type="text/css"
+          href="{{ url_for('css', filename='uikit/css/uikit.min.css') }}" />
+    <link rel="stylesheet" href="/static/new/css/index_page.css" />
+    <link rel="stylesheet" href="/static/new/css/autocomplete.css" />
+    <!-- UIkit JS -->
+    <script language="javascript"
+            type="text/javascript"
+            src="{{ url_for('js', filename='uikit/js/uikit.min.js') }}"></script>
+    <script language="javascript"
+            type="text/javascript"
+            src="{{ url_for('js', filename='uikit/js/uikit-icons.min.js') }}"></script>
+    <!--locally built emfed package see source file:https://github.com/sampsyo/emfed -->
+    <script type="module" src="static/new/javascript/emfed.bundle.js"></script>
+    <link rel="stylesheet" type="text/css" href="static/new/css/toots.css">
+    <style TYPE="text/css">
   p.interact { display: none; }
 
 
@@ -88,188 +88,278 @@
          }
 
 	 
-</style>
+    </style>
+{% endblock %}
+{% block search %}
+    <div class="container-fluid"
+         style="width: 100%;
+                min-width: 650px;
+                position: relative;
+                background-color: #d5d5d5;
+                height: 100px">
+        <form method="get" action="/gsearch" id="globalsearchform">
+            <div class="form-group">
+                <div class="controls">
+                    <select name="type">
+                        <option value="gene">Genes / Molecules</option>
+                        <option value="phenotype" {% if type=="phenotype" %}selected{% endif %}>Phenotypes</option>
+                    </select>
+                    <div class="col-8  autocomplete"
+                         style="margin-left: 30px;
+                                margin-right: 10px">
+                        <input autocomplete="off"
+                               class="global_search_input"
+                               id="term"
+                               style="width:45vw"
+                               type="text"
+                               required
+                               placeholder="Enter you search term here (ex: cytochrome AND P450)"
+                               name="terms">
+                        <button type="submit"
+                                class="btn-stc"
+                                style="position: absolute;
+                                       background-color: #336699">
+                            <i class="fa fa-search" title="Search " style="color:white;"></i>
+                        </button>
+                    </div>
+                    <!-- todo fix text overlap for this;;responsiveness-->
+                    <span style="padding: 5px;margin-left: 65px;" id="gnqna_home">
+                        <a href="/gnqna">GNQA Search</a>
+                    </span>
+                    <span style="padding: 5px;margin-left: 65px;">
+                        <a style="text-decoration: none" target="_blank" href="/search-syntax">
+                            <i style="text-align: center;
+                                      color:#336699"
+                               class="fa fa-question-circle fa-2x"
+                               title="see more search hints"
+                               aria-hidden="true"></i>
+                        </a>
+                    </span>
+                </div>
+            </div>
+        </form>
+    </div>
 {% endblock %}
-
-
-	{% block search %}
-        <div class="container-fluid" style="width: 100%; min-width: 650px; position: relative;background-color: #d5d5d5; height: 100px;">
-            <form method="get" action="/gsearch" id="globalsearchform">
-		<div class="form-group">
-                    <div class="controls">
-			<select name="type">
-                            <option value="gene">Genes / Molecules</option>
-                            <option value="phenotype" {% if type=="phenotype" %}selected{% endif %}>Phenotypes</option>
-			</select>
-			<div class="col-8  autocomplete" style="margin-left: 30px;margin-right: 10px;">
-                            <input autocomplete="off" class="global_search_input" id="term" style="width:45vw" type="text" required placeholder="Enter you search term here (ex: cytochrome AND P450)" name="terms">
-
-			    <button   type="submit" class="btn-stc" style="position: absolute;  background-color: #336699"><i class="fa fa-search" title="Search " style="color:white;"></i></button>
-			</div>
-			<!-- todo fix text overlap for this;;responsiveness-->
-
-			<span style="padding: 5px;margin-left: 65px;" id="gnqna_home">
-                            <a href="/gnqna">GNQA Search</a>
-			</span>
-
-			<span  style="padding: 5px;margin-left: 65px;" >
-                            <a style="text-decoration: none" target="_blank" href="/search-syntax">
-                                <i  style="text-align: center;color:#336699;;" class="fa fa-question-circle fa-2x" title="see more search hints" aria-hidden="true"></i>
-                            </a>
-			</span>
-		    </div>
-		</div>
-		    </form>
-	</div>
-	{% endblock %}
-
-	
 {% block content %}
-<!-- Start of body -->
+    <!-- Start of body -->
     <div class="container-fluid" style="min-width: 1210px;">
-
-      {{ flash_me() }}
-
-      {%if anon_collections | length > 0%}
-      <div class="panel panel-warning">
-	<div class="panel-heading">
-	  <h3 class="panel-title">Import Anonymous Collections</h3>
-	</div>
-	<div class="panel-body">
-	  <p>
-	    There {%if anon_collections | length > 1%}are{%else%}is{%endif%}
-	    {{anon_collections | length}} anonymous
-	    collection{%if anon_collections | length > 1%}s{%endif%}
-	    associated with your current session. What do you wish to do?
-	  </p>
-	  <p class="text-danger" style="font-weight: bold;">
-	    <small>
-	      If you choose to ignore this, the anonymous collections will be
-	      eventually deleted and lost.
-	    </small>
-	  </p>
-	  <form action="{{url_for('handle_anonymous_collections')}}"
-		method="POST">
-	    <div class="form-group">
-	      <input type="radio" id="rdo-import" value="import"
-		     name="anon_choice" />
-	      <label for="rdo-import">Import</label>
-	      <input type="radio" id="rdo-delete" value="delete"
-		     name="anon_choice" />
-	      <label for="rdo-delete">Delete</label>
-	    </div>
-
-	    <input type="submit" class="btn btn-warning" value="Submit" />
-	  </form>
-	</div>
-      </div>
-      {%endif%}
-
+        {{ flash_me() }}
+        {% if anon_collections | length > 0 %}
+            <div class="panel panel-warning">
+                <div class="panel-heading">
+                    <h3 class="panel-title">Import Anonymous Collections</h3>
+                </div>
+                <div class="panel-body">
+                    <p>
+                        There
+                        {% if anon_collections | length > 1 %}
+                            are
+                        {% else %}
+                            is
+                        {% endif %}
+                        {{ anon_collections | length }} anonymous
+                        collection
+                        {% if anon_collections | length > 1 %}s{% endif %}
+                        associated with your current session. What do you wish to do?
+                    </p>
+                    <p class="text-danger" style="font-weight: bold;">
+                        <small>
+                            If you choose to ignore this, the anonymous collections will be
+                            eventually deleted and lost.
+                        </small>
+                    </p>
+                    <form action="{{ url_for("handle_anonymous_collections") }}" method="post">
+                        <div class="form-group">
+                            <input type="radio" id="rdo-import" value="import" name="anon_choice" />
+                            <label for="rdo-import">Import</label>
+                            <input type="radio" id="rdo-delete" value="delete" name="anon_choice" />
+                            <label for="rdo-delete">Delete</label>
+                        </div>
+                        <input type="submit" class="btn btn-warning" value="Submit" />
+                    </form>
+                </div>
+            </div>
+        {% endif %}
         <div class="row" style="width: 100%;">
-
-            <div class="col-xs-4" style="margin-right:50px; min-width: 530px; max-width: 550px;">
+            <div class="col-xs-4"
+                 style="margin-right:50px;
+                        min-width: 530px;
+                        max-width: 550px">
                 <section id="search">
                     <div class="page-header">
                         <h2>Select and Search</h2>
                     </div>
-                    <form method="get" action="/search" target="_blank" id="searchform" name="SEARCHFORM",
-			  data-gn_server_url="{{gn_server_url}}">
+                    <form method="get"
+                          action="/search"
+                          target="_blank"
+                          id="searchform"
+                          name="SEARCHFORM"
+                          data-gn_server_url="{{ gn_server_url }}">
                         <fieldset>
-                            <div style="padding-left: 20px; padding-right: 20px;" class="form-horizontal">
-
+                            <div style="padding-left: 20px;
+                                        padding-right: 20px"
+                                 class="form-horizontal">
                                 <div class="form-group">
-                                    <label for="species" class="col-xs-1 control-label" style="width: 65px !important;">Species:</label>
-                                    <div class="col-xs-10 controls input-append" style="display: flex; padding-left: 20px;">
+                                    <label for="species"
+                                           class="col-xs-1 control-label"
+                                           style="width: 65px !important">Species:</label>
+                                    <div class="col-xs-10 controls input-append"
+                                         style="display: flex;
+                                                padding-left: 20px">
                                         <div class="col-9">
-                                          <select name="species" id="species" class="form-control" style="width: 340px !important;"><option>Loading...</option></select>
+                                            <select name="species"
+                                                    id="species"
+                                                    class="form-control"
+                                                    style="width: 340px !important">
+                                                <option>Loading...</option>
+                                            </select>
                                         </div>
                                     </div>
                                 </div>
-
                                 <div class="form-group">
-                                    <label for="group" class="col-xs-1 control-label" style="width: 65px !important;">Group:</label>
-                                    <div class="col-xs-10 controls input-append" style="display: flex; padding-left: 20px;">
+                                    <label for="group"
+                                           class="col-xs-1 control-label"
+                                           style="width: 65px !important">Group:</label>
+                                    <div class="col-xs-10 controls input-append"
+                                         style="display: flex;
+                                                padding-left: 20px">
                                         <div class="col-9">
-                                          <select name="group" id="group" class="form-control" style="width: 340px !important;"><option>Loading...</option></select>
-                                          <i class="icon-question-sign"></i>
+                                            <select name="group"
+                                                    id="group"
+                                                    class="form-control"
+                                                    style="width: 340px !important">
+                                                <option>Loading...</option>
+                                            </select>
+                                            <i class="icon-question-sign"></i>
                                         </div>
                                         <div class="col-3" style="margin-left: 10px;">
-                                            <button type="button" id="group_info" class="btn form-control info-button"><span class="glyphicon glyphicon-flag"></span> Info</button>
+                                            <button type="button" id="group_info" class="btn form-control info-button">
+                                                <span class="glyphicon glyphicon-flag"></span> Info
+                                            </button>
                                         </div>
                                     </div>
                                 </div>
-
                                 <div class="form-group">
-                                    <label for="tissue" class="col-xs-1 control-label" style="width: 65px !important;">Type:</label>
-                                    <div class="col-xs-10 controls input-append" style="display: flex; padding-left: 20px;">
+                                    <label for="tissue"
+                                           class="col-xs-1 control-label"
+                                           style="width: 65px !important">Type:</label>
+                                    <div class="col-xs-10 controls input-append"
+                                         style="display: flex;
+                                                padding-left: 20px">
                                         <div class="col-9">
-                                          <select name="type" id="type" class="form-control" style="width: 340px !important;"><option>Loading...</option></select>
+                                            <select name="type"
+                                                    id="type"
+                                                    class="form-control"
+                                                    style="width: 340px !important">
+                                                <option>Loading...</option>
+                                            </select>
                                         </div>
                                         <div class="col-3" style="margin-left: 10px;">
-                                            <button type="button" id="dataset_info" class="btn form-control info-button"><span class="glyphicon glyphicon-flag"></span> Info</button>
+                                            <button type="button" id="dataset_info" class="btn form-control info-button">
+                                                <span class="glyphicon glyphicon-flag"></span> Info
+                                            </button>
                                         </div>
                                     </div>
                                 </div>
-
                                 <div class="form-group">
-                                    <label for="dataset" class="col-xs-1 control-label" style="width: 65px !important;">Dataset:</label>
+                                    <label for="dataset"
+                                           class="col-xs-1 control-label"
+                                           style="width: 65px !important">Dataset:</label>
                                     <div class="col-xs-10 controls" style="display: flex; padding-left: 20px;">
                                         <div class="col-9">
-                                          <select name="dataset" id="dataset" class="form-control" style="max-width: 550px; width: 450px !important;"><option>Loading...</option></select>
-                                          <i class="icon-question-sign"></i>
+                                            <select name="dataset"
+                                                    id="dataset"
+                                                    class="form-control"
+                                                    style="max-width: 550px;
+                                                           width: 450px !important">
+                                                <option>Loading...</option>
+                                            </select>
+                                            <i class="icon-question-sign"></i>
                                         </div>
                                     </div>
                                 </div>
                                 <!--  GET ANY  SEARCH -->
-
                                 <div class="form-group">
-                                    <label for="or_search" class="col-xs-1 control-label" style="padding-left: 0px; padding-right: 0px; width: 65px !important;">Get Any:</label>
+                                    <label for="or_search"
+                                           class="col-xs-1 control-label"
+                                           style="padding-left: 0px;
+                                                  padding-right: 0px;
+                                                  width: 65px !important">Get Any:</label>
                                     <div class="col-xs-10 controls" style="padding-left: 20px;">
                                         <div class="col-8 autocomplete">
-                                          <textarea id="myInput" onkeyup="pressed(event)" name="search_terms_or" rows="1" class="form-control search-query" style="resize: vertical; max-width: 550px; width: 450px !important;" id="or_search"></textarea>
+                                            <textarea id="myInput"
+                                                      onkeyup="pressed(event)"
+                                                      name="search_terms_or"
+                                                      rows="1"
+                                                      class="form-control search-query"
+                                                      style="resize: vertical;
+                                                             max-width: 550px;
+                                                             width: 450px !important"
+                                                      id="or_search"></textarea>
                                         </div>
                                     </div>
                                 </div>
-
                                 <!--  GET ANY HELP   -->
                                 <div class="form-group">
-                                    <label for="btsearch" class="col-xs-1 control-label" style="width: 65px !important;"></label>
+                                    <label for="btsearch"
+                                           class="col-xs-1 control-label"
+                                           style="width: 65px !important"></label>
                                     <div class="col-xs-10 controls" style="padding-left: 20px;">
                                         <div class="col-12 controls">
-                                            Enter terms, genes, ID numbers in the <b>Search</b> field.<br>
-                                            Use <b>*</b> or <b>?</b> wildcards (Cyp*a?, synap*).<br>
+                                            Enter terms, genes, ID numbers in the <b>Search</b> field.
+                                            <br>
+                                            Use <b>*</b> or <b>?</b> wildcards (Cyp*a?, synap*).
+                                            <br>
                                             Use <b>quotes</b> for terms such as <i>"tyrosine kinase"</i>.
-
-
-                                            <div><strong><a style="text-decoration: none;"  href="https://issues.genenetwork.org/topics/xapian/xapian-search-queries" target=”_blank” >see more hints</a></strong></div>
+                                            <div>
+                                                <strong>
+                                                    <a style="text-decoration: none"
+                                                       href="https://issues.genenetwork.org/topics/xapian/xapian-search-queries"
+                                                       target="_blank">see more hints</a>
+                                                </strong>
+                                            </div>
                                         </div>
                                     </div>
                                 </div>
-
                                 <div class="form-group">
-                                    <label for="and_search" class="col-xs-1 control-label" style="padding-left: 0px; padding-right: 0px; width: 65px !important;">Combined:</label>
+                                    <label for="and_search"
+                                           class="col-xs-1 control-label"
+                                           style="padding-left: 0px;
+                                                  padding-right: 0px;
+                                                  width: 65px !important">Combined:</label>
                                     <div class="col-xs-10 controls" style="padding-left: 20px;">
                                         <div class="col-8 autocomplete">
-                                          <textarea id="myInput" onkeyup="pressed(event)" name="search_terms_and" rows="1" class="form-control search-query" style="resize: vertical; max-width: 550px; width: 450px !important;" id="and_search"></textarea>
+                                            <textarea id="myInput"
+                                                      onkeyup="pressed(event)"
+                                                      name="search_terms_and"
+                                                      rows="1"
+                                                      class="form-control search-query"
+                                                      style="resize: vertical;
+                                                             max-width: 550px;
+                                                             width: 450px !important"
+                                                      id="and_search"></textarea>
                                         </div>
                                     </div>
                                 </div>
-
                                 <div class="form-group">
-                                    <label for="btsearch" class="col-xs-1 control-label" style="width: 65px !important;"></label>
+                                    <label for="btsearch"
+                                           class="col-xs-1 control-label"
+                                           style="width: 65px !important"></label>
                                     <div class="col-xs-10 controls" style="display: flex; padding-left: 20px;">
                                         <div class="col-2 controls">
-                                            <button id="btsearch" class="btn btn-primary form-control"><span class="glyphicon glyphicon-search"></span> Search</button>
+                                            <button id="btsearch" class="btn btn-primary form-control">
+                                                <span class="glyphicon glyphicon-search"></span> Search
+                                            </button>
                                         </div>
                                         <div class="col-2 align-self-end controls" style="padding-left: 20px;">
-                                            <button type="button" id="make_default" class="btn form-control info-button"><span class="glyphicon glyphicon-pushpin"></span> Lock Menu</button>
+                                            <button type="button" id="make_default" class="btn form-control info-button">
+                                                <span class="glyphicon glyphicon-pushpin"></span> Lock Menu
+                                            </button>
                                         </div>
                                     </div>
                                 </div>
-
                                 <!--  SEARCH, MAKE DEFAULT -->
-                                <div class="form-group">
-                                </div>
+                                <div class="form-group"></div>
                                 <input type="hidden" name="accession_id" value="None" class="form-control">
                                 <input type="hidden" name="FormID" value="searchResult" class="form-control">
                             </div>
@@ -280,72 +370,86 @@
                     <div class="page-header">
                         <h2>Advanced Commands</h2>
                     </div>
-
-                    <p>You can also use advanced commands. Copy these simple examples into the Get Any field for single term searches and Combined for searches with multiple terms:</p>
-
-                      <ul>
-                        <li><b>POSITION=(chr1 25 30)</b> finds genes, markers, or transcripts on
-                        chromosome 1 between 25 and 30 Mb.</li>
-
-                        <li><b>MEAN=(15 16)</b> in the <b>Combined</b> field finds
-                        highly expressed genes (15 to 16 log2 units)</li>
-
-                        <li><b>RANGE=(1.5 2.5)</b> in the <b>Any</b> field finds traits with values with a specified fold-range (minimum = 1). 
-                        Useful for finding "housekeeping genes" <b>(1.0 1.2)</b> or highly variable molecular assays <b>(10 100)</b>.</li>
-
-                        <li><b>LRS=(15 1000)</b> or <b>LOD=(2 8)</b> finds all traits with peak LRS or LOD scores between lower and upper limits.</li>
-
-                        <li><b>LRS=(9 999 Chr4 122 155)</b> finds all traits on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999.</li>
-
-                        <li><b>cisLRS=(15 1000 5)</b> or <b>cisLOD=(2 8 5)</b> finds all cis eQTLs with peak LRS or LOD scores between lower and upper limits,
-                            with an <b>inclusion</b> zone of 5 Mb around the parent gene.</li>
-
-                        <li><b>transLRS=(15 1000 5)</b> or <b>transLOD=(2 8 5)</b> finds all trans eQTLs with peak LRS or LOD scores between lower and upper limits,
+                    <p>
+                        You can also use advanced commands. Copy these simple examples into the Get Any field for single term searches and Combined for searches with multiple terms:
+                    </p>
+                    <ul>
+                        <li>
+                            <b>POSITION=(chr1 25 30)</b> finds genes, markers, or transcripts on
+                            chromosome 1 between 25 and 30 Mb.
+                        </li>
+                        <li>
+                            <b>MEAN=(15 16)</b> in the <b>Combined</b> field finds
+                            highly expressed genes (15 to 16 log2 units)
+                        </li>
+                        <li>
+                            <b>RANGE=(1.5 2.5)</b> in the <b>Any</b> field finds traits with values with a specified fold-range (minimum = 1).
+                            Useful for finding "housekeeping genes" <b>(1.0 1.2)</b> or highly variable molecular assays <b>(10 100)</b>.
+                        </li>
+                        <li>
+                            <b>LRS=(15 1000)</b> or <b>LOD=(2 8)</b> finds all traits with peak LRS or LOD scores between lower and upper limits.
+                        </li>
+                        <li>
+                            <b>LRS=(9 999 Chr4 122 155)</b> finds all traits on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999.
+                        </li>
+                        <li>
+                            <b>cisLRS=(15 1000 5)</b> or <b>cisLOD=(2 8 5)</b> finds all cis eQTLs with peak LRS or LOD scores between lower and upper limits,
+                            with an <b>inclusion</b> zone of 5 Mb around the parent gene.
+                        </li>
+                        <li>
+                            <b>transLRS=(15 1000 5)</b> or <b>transLOD=(2 8 5)</b> finds all trans eQTLs with peak LRS or LOD scores between lower and upper limits,
                             with an <b>exclusion</b> zone of 5 Mb around the parent gene. You can also add a fourth term specifying which chromosome you want the transLRS to be on
-                            (for example transLRS=(15 1000 5 7) would find all trans eQTLs with peak LRS on chromosome 7 that is also a trans eQTL with exclusionary zone of 5Mb).</li>
-
-                        <li><b>POSITION=(Chr4 122 130) cisLRS=(9 999 10)</b>
+                            (for example transLRS=(15 1000 5 7) would find all trans eQTLs with peak LRS on chromosome 7 that is also a trans eQTL with exclusionary zone of 5Mb).
+                        </li>
+                        <li>
+                            <b>POSITION=(Chr4 122 130) cisLRS=(9 999 10)</b>
                             finds all traits on Chr 4 from 122 and 155 Mb with cisLRS scores
-                            between 9 and 999 and an inclusion zone of 10 Mb.</li>
-
-                        <li><b>RIF=mitochondrial</b> searches RNA databases for <a href="https://en.wikipedia.org/wiki/GeneRIF">
-                        GeneRIF</a> links.</li>
-
-                        <li><b>WIKI=nicotine</b> searches <a href="http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki">
-                        GeneWiki</a> for genes that you or other users have annotated
-                        with the word <i>nicotine</i>.</li>
-
-                        <li><b>GO:0045202</b> searches for synapse-associated genes listed in the
-                        <a href="http://amigo.geneontology.org/amigo/medial_search?q=GO%3A0045202">
-                            Gene Ontology</a>.</li>
-
-                        <li><b>RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)</b>
-                        finds diabetes-associated transcripts with peak <a href="{{ url_for('gn_docs_blueprint.glossary') }}#E">
-                        trans eQTLs</a> on Chr 2 between 100 and 105 Mb with LRS
-                        scores between 9 and 999.</li>
-                      </ul>
+                            between 9 and 999 and an inclusion zone of 10 Mb.
+                        </li>
+                        <li>
+                            <b>RIF=mitochondrial</b> searches RNA databases for <a href="https://en.wikipedia.org/wiki/GeneRIF">GeneRIF</a> links.
+                        </li>
+                        <li>
+                            <b>WIKI=nicotine</b> searches <a href="http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki">GeneWiki</a> for genes that you or other users have annotated
+                            with the word <i>nicotine</i>.
+                        </li>
+                        <li>
+                            <b>GO:0045202</b> searches for synapse-associated genes listed in the
+                            <a href="http://amigo.geneontology.org/amigo/medial_search?q=GO%3A0045202">Gene Ontology</a>.
+                        </li>
+                        <li>
+                            <b>RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)</b>
+                            finds diabetes-associated transcripts with peak <a href="{{ url_for("gn_docs_blueprint.glossary") }}#E">trans eQTLs</a> on Chr 2 between 100 and 105 Mb with LRS
+                            scores between 9 and 999.
+                        </li>
+                    </ul>
                 </section>
             </div>
-
             <div class="col-xs-4" style="width: 600px !important;">
-	            <section id="tutorials">
+                <section id="tutorials">
                     <div class="page-header">
                         <h2>Tutorials</h2>
                     </div>
                     <div class="uk-grid-match uk-child-width-1-3@m" uk-grid>
                         <div>
-                            <strong><a class="uk-link-text" href="/tutorials">Webinars & Courses</a></strong><br>
-                            In-person courses, live webinars and webinar recordings<br>
+                            <strong><a class="uk-link-text" href="/tutorials">Webinars & Courses</a></strong>
+                            <br>
+                            In-person courses, live webinars and webinar recordings
+                            <br>
                             <a href="/tutorials" class="uk-icon-link" uk-icon="laptop" ratio="2"></a>
                         </div>
                         <div>
-                            <strong><a class="uk-link-text" href="/tutorials">Tutorials</a></strong><br>
-                            Tutorials: Training materials in HTML, PDF and video formats<br>
+                            <strong><a class="uk-link-text" href="/tutorials">Tutorials</a></strong>
+                            <br>
+                            Tutorials: Training materials in HTML, PDF and video formats
+                            <br>
                             <a href="/tutorials" class="uk-icon-link" uk-icon="file-text" ratio="2"></a>
                         </div>
                         <div>
-                            <strong><a class="uk-link-text" href="/tutorials">Documentation</a></strong><br>
-                            Online manuals, handbooks, fact sheets and FAQs<br>
+                            <strong><a class="uk-link-text" href="/tutorials">Documentation</a></strong>
+                            <br>
+                            Online manuals, handbooks, fact sheets and FAQs
+                            <br>
                             <a href="/tutorials" class="uk-icon-link" uk-icon="album" ratio="2"></a>
                         </div>
                     </div>
@@ -354,18 +458,19 @@
                     <div class="page-header">
                         <h2>News</h2>
                     </div>
-                    <div id="mastadon" style="height: 405px; overflow: scroll; overflow-x: hidden;">
-                    	<a class="mastodon-feed" target="_blank"
-   href="https://genomic.social/@genenetwork"
-   data-toot-limit="5"
-   >Genenetwork mastadon</a>
-                    	
+                    <div id="mastadon"
+                         style="height: 405px;
+                                overflow: scroll;
+                                overflow-x: hidden">
+                        <a class="mastodon-feed"
+                           target="_blank"
+                           href="https://genomic.social/@genenetwork"
+                           data-toot-limit="5">Genenetwork mastadon</a>
                     </div>
                     <div align="right">
-
                         <a href="https://genomic.social/@genenetwork">more news items...</a>
                     </div>
-		        </section>
+                </section>
                 <section id="websites">
                     <div class="page-header">
                         <h2>Links</h2>
@@ -373,56 +478,82 @@
                     <ul>
                         <li>Github</li>
                         <ul>
-                            <li><a href="https://github.com/genenetwork/genenetwork2">GN2 Source Code</a></li>
-                            <li><a href="https://github.com/genenetwork/genenetwork3">GN3 Source Code</a></li>
-                            <li><a href="https://github.com/genenetwork/genenetwork">GN1 Source Code</a></li>
-                            <li><a href="https://github.com/genenetwork/sysmaintenance">System Maintenance Code</a></li>
+                            <li>
+                                <a href="https://github.com/genenetwork/genenetwork2">GN2 Source Code</a>
+                            </li>
+                            <li>
+                                <a href="https://github.com/genenetwork/genenetwork3">GN3 Source Code</a>
+                            </li>
+                            <li>
+                                <a href="https://github.com/genenetwork/genenetwork">GN1 Source Code</a>
+                            </li>
+                            <li>
+                                <a href="https://github.com/genenetwork/sysmaintenance">System Maintenance Code</a>
+                            </li>
                         </ul>
                     </ul>
                     <ul>
                         <li>GeneNetwork v2</li>
                         <ul>
-                            <li><a href="https://genenetwork.org/">Main website</a> at UTHSC</li>
+                            <li>
+                                <a href="https://genenetwork.org/">Main website</a> at UTHSC
+                            </li>
                         </ul>
                     </ul>
                     <ul>
                         <li>GeneNetwork v1</li>
                         <ul>
-                            <li><a href="http://gn1.genenetwork.org/">Main website</a> at UTHSC</li>
+                            <li>
+                                <a href="http://gn1.genenetwork.org/">Main website</a> at UTHSC
+                            </li>
                         </ul>
                     </ul>
                     <ul>
                         <li>Affiliates</li>
                         <ul>
-                            <li><b><a href="http://gn1.genenetwork.org">GeneNetwork 1</a> at UTHSC</b></li>
-                            <li><a href="https://systems-genetics.org/">Systems Genetics</a> at EPFL</li>
-                            <li><a href="http://bnw.genenetwork.org/">Bayesian Network Web Server</a> at UTHSC</li>
-                            <li><a href="https://www.geneweaver.org/">GeneWeaver</a></li>
-                            <li><a href="https://phenogen.org/">PhenoGen</a> at University of Colorado</li>
-                            <li><a href="http://www.webgestalt.org/">WebGestalt</a> at Baylor</li>
+                            <li>
+                                <b><a href="http://gn1.genenetwork.org">GeneNetwork 1</a> at UTHSC</b>
+                            </li>
+                            <li>
+                                <a href="https://systems-genetics.org/">Systems Genetics</a> at EPFL
+                            </li>
+                            <li>
+                                <a href="http://bnw.genenetwork.org/">Bayesian Network Web Server</a> at UTHSC
+                            </li>
+                            <li>
+                                <a href="https://www.geneweaver.org/">GeneWeaver</a>
+                            </li>
+                            <li>
+                                <a href="https://phenogen.org/">PhenoGen</a> at University of Colorado
+                            </li>
+                            <li>
+                                <a href="http://www.webgestalt.org/">WebGestalt</a> at Baylor
+                            </li>
                         </ul>
                     </ul>
                     <ul>
                         <li>GeneNetwork hosted portals</li>
                         <ul>
-                            <li><a href="https://www.opar.io/">Omics Portal For Addiction Research</a></li>
-                            <li><a href="https://msk.genenetwork.org/">GN4MSK musculoskeletal</a></li>
-                            <li><a href="https://genecup.org/">GeneCup: Mining PubMed for Gene Relationships using Custom Ontologies</a></li>
+                            <li>
+                                <a href="https://www.opar.io/">Omics Portal For Addiction Research</a>
+                            </li>
+                            <li>
+                                <a href="https://msk.genenetwork.org/">GN4MSK musculoskeletal</a>
+                            </li>
+                            <li>
+                                <a href="https://genecup.org/">GeneCup: Mining PubMed for Gene Relationships using Custom Ontologies</a>
+                            </li>
                         </ul>
                     </ul>
                 </section>
             </div>
         </div>
     </div>
-
-{%endblock%}
-
+{% endblock %}
 {% block js %}
-    
-<script src="/static/new/javascript/search_autocomplete.js"></script>
-<script src="/static/new/javascript/dataset_select_menu_orig.js"></script>
-
-                <script type="text/javascript">
+    <script src="/static/new/javascript/search_autocomplete.js"></script>
+    <script src="/static/new/javascript/dataset_select_menu_orig.js"></script>
+    <script type="text/javascript">
                  $(document).ready(function() {
 
                      const urlParams = new  URLSearchParams(window.location.search)
@@ -461,9 +592,8 @@
                      })
 
                  });
-</script>
-  <script type="text/javascript">
-    
+    </script>
+    <script type="text/javascript">
 $(document).on('submit', '#searchform', function(event){
 
     event.preventDefault()
@@ -482,7 +612,6 @@ $(document).on('submit', '#searchform', function(event){
 
 });
     </script>
-
     <script>
         function pressed(e) {
             // Has the enter key been pressed?
-- 
cgit v1.2.3