From 386130487dc5287382ebc27413a642253c953986 Mon Sep 17 00:00:00 2001 From: Alexander_Kabui Date: Thu, 26 Sep 2024 14:10:29 +0300 Subject: Refactor: Fix order for importing css and js files. --- gn2/wqflask/templates/index_page.html | 893 +++++++++++++++++----------------- 1 file changed, 447 insertions(+), 446 deletions(-) (limited to 'gn2/wqflask/templates') diff --git a/gn2/wqflask/templates/index_page.html b/gn2/wqflask/templates/index_page.html index f2294e60..d3af519b 100755 --- a/gn2/wqflask/templates/index_page.html +++ b/gn2/wqflask/templates/index_page.html @@ -1,518 +1,519 @@ {% extends "base.html" %} -{% block title %}GeneNetwork{% endblock %} +{% block title %} GeneNetwork {% endblock %} + + + + {% block css %} - - - - - - - - - - + ul { + margin-top: 0px; + } + + .toot { + padding-top:8px; + background:#f9f9f9; + color:#000; + + } + + {% endblock %} {% block search %} - {% include "gsearch.html" %} +{% include "gsearch.html" %} {% endblock %} {% block content %} - -
- {{ flash_me() }} - {% if anon_collections | length > 0 %} -
-
-

Import Anonymous Collections

+
+ {{ flash_me() }} + {% if anon_collections | length > 0 %} +
+
+

Import Anonymous Collections

+
+
+

+ There + {% if anon_collections | length > 1 %} + are + {% else %} + is + {% endif %} + {{ anon_collections | length }} anonymous + collection + {% if anon_collections | length > 1 %}s{% endif %} + associated with your current session. What do you wish to do? +

+

+ + If you choose to ignore this, the anonymous collections will be + eventually deleted and lost. + +

+
+
+ + + +
-
-

- There - {% if anon_collections | length > 1 %} - are - {% else %} - is - {% endif %} - {{ anon_collections | length }} anonymous - collection - {% if anon_collections | length > 1 %}s{% endif %} - associated with your current session. What do you wish to do? -

-

- - If you choose to ignore this, the anonymous collections will be - eventually deleted and lost. - -

- -
- - - - -
- - + + +
+
+ {% endif %} +
+
+
- {% endif %} -
-
- -
-
-

Advanced Commands

+ +
+ + +
+ + +
+
+
+

Advanced Commands

+
+

+ You can also use advanced commands. Copy these simple examples into the Get Any field for single term searches and Combined for searches with multiple terms: +

+
    +
  • + POSITION=(chr1 25 30) finds genes, markers, or transcripts on + chromosome 1 between 25 and 30 Mb. +
    • +
  • + MEAN=(15 16) in the Combined field finds + highly expressed genes (15 to 16 log2 units) +
    • +
  • + RANGE=(1.5 2.5) in the Any field finds traits with values with a specified fold-range (minimum = 1). + Useful for finding "housekeeping genes" (1.0 1.2) or highly variable molecular assays (10 100). +
    • +
  • + LRS=(15 1000) or LOD=(2 8) finds all traits with peak LRS or LOD scores between lower and upper limits. +
    • +
  • + LRS=(9 999 Chr4 122 155) finds all traits on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999. +
    • +
  • + cisLRS=(15 1000 5) or cisLOD=(2 8 5) finds all cis eQTLs with peak LRS or LOD scores between lower and upper limits, + with an inclusion zone of 5 Mb around the parent gene. +
    • +
  • + transLRS=(15 1000 5) or transLOD=(2 8 5) finds all trans eQTLs with peak LRS or LOD scores between lower and upper limits, + with an exclusion zone of 5 Mb around the parent gene. You can also add a fourth term specifying which chromosome you want the transLRS to be on + (for example transLRS=(15 1000 5 7) would find all trans eQTLs with peak LRS on chromosome 7 that is also a trans eQTL with exclusionary zone of 5Mb). +
    • +
  • + POSITION=(Chr4 122 130) cisLRS=(9 999 10) + finds all traits on Chr 4 from 122 and 155 Mb with cisLRS scores + between 9 and 999 and an inclusion zone of 10 Mb. +
    • +
  • + RIF=mitochondrial searches RNA databases for GeneRIF links. +
    • +
  • + WIKI=nicotine searches GeneWiki for genes that you or other users have annotated + with the word nicotine. +
    • +
  • + GO:0045202 searches for synapse-associated genes listed in the + Gene Ontology. +
    • +
  • + RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10) + finds diabetes-associated transcripts with peak trans eQTLs on Chr 2 between 100 and 105 Mb with LRS + scores between 9 and 999. +
    • +
+
+
+
+
+
+

Tutorials

+
+
+
+ Webinars & Courses +
+ In-person courses, live webinars and webinar recordings +
+ +
+
+ Tutorials +
+ Tutorials: Training materials in HTML, PDF and video formats +
+
-

- You can also use advanced commands. Copy these simple examples into the Get Any field for single term searches and Combined for searches with multiple terms: -

+
+ Documentation +
+ Online manuals, handbooks, fact sheets and FAQs +
+ +
+
+
+
+
+

News

+
+ + +
+
+
+

Links

+
+
    +
  • Github
    • - POSITION=(chr1 25 30) finds genes, markers, or transcripts on - chromosome 1 between 25 and 30 Mb. + GN2 Source Code
    • - MEAN=(15 16) in the Combined field finds - highly expressed genes (15 to 16 log2 units) + GN3 Source Code
      • -
    • - RANGE=(1.5 2.5) in the Any field finds traits with values with a specified fold-range (minimum = 1). - Useful for finding "housekeeping genes" (1.0 1.2) or highly variable molecular assays (10 100). +
    • + GN1 Source Code
    • - LRS=(15 1000) or LOD=(2 8) finds all traits with peak LRS or LOD scores between lower and upper limits. + System Maintenance Code
      • +
    +
+
    +
  • GeneNetwork v2
    • +
    • - LRS=(9 999 Chr4 122 155) finds all traits on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999. + Main website at UTHSC
      • +
    +
+
    +
  • GeneNetwork v1
    • +
    • - cisLRS=(15 1000 5) or cisLOD=(2 8 5) finds all cis eQTLs with peak LRS or LOD scores between lower and upper limits, - with an inclusion zone of 5 Mb around the parent gene. + Main website at UTHSC
      • +
    +
+
    +
  • Affiliates
    • +
    • - transLRS=(15 1000 5) or transLOD=(2 8 5) finds all trans eQTLs with peak LRS or LOD scores between lower and upper limits, - with an exclusion zone of 5 Mb around the parent gene. You can also add a fourth term specifying which chromosome you want the transLRS to be on - (for example transLRS=(15 1000 5 7) would find all trans eQTLs with peak LRS on chromosome 7 that is also a trans eQTL with exclusionary zone of 5Mb). + GeneNetwork 1 at UTHSC
    • - POSITION=(Chr4 122 130) cisLRS=(9 999 10) - finds all traits on Chr 4 from 122 and 155 Mb with cisLRS scores - between 9 and 999 and an inclusion zone of 10 Mb. + Systems Genetics at EPFL
    • - RIF=mitochondrial searches RNA databases for GeneRIF links. + Bayesian Network Web Server at UTHSC
    • - WIKI=nicotine searches GeneWiki for genes that you or other users have annotated - with the word nicotine. + GeneWeaver
    • - GO:0045202 searches for synapse-associated genes listed in the - Gene Ontology. + PhenoGen at University of Colorado
    • - RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10) - finds diabetes-associated transcripts with peak trans eQTLs on Chr 2 between 100 and 105 Mb with LRS - scores between 9 and 999. + WebGestalt at Baylor
    -
-
-
-
-
-

Tutorials

-
-
-
- Webinars & Courses -
- In-person courses, live webinars and webinar recordings -
- -
-
- Tutorials -
- Tutorials: Training materials in HTML, PDF and video formats -
- -
-
- Documentation -
- Online manuals, handbooks, fact sheets and FAQs -
- -
-
-
-
-
-

News

-
- - -
-
-
-

Links

-
- - + +
-
+ +
+
+ {% endblock %} + + + {% block js %} - - - - + + - + if( event.target.value.trim() != "" ) { + saveBeforeSubmit(event.target.value.trim()) + $("#searchform").prop("action", "/search") + $("#searchform")[0].submit(); + } + + } + } + + + {% endblock %} -- cgit v1.2.3