From 204a308be0f741726b9a620d88fbc22b22124c81 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Fri, 29 Dec 2023 18:55:37 +0000
Subject: Namespace all modules under gn2.

We move all modules under a gn2 directory. This is important for
"correct" packaging and deployment as a Guix service.
---
 gn2/wqflask/templates/wgcna_results.html | 76 ++++++++++++++++++++++++++++++++
 1 file changed, 76 insertions(+)
 create mode 100644 gn2/wqflask/templates/wgcna_results.html

(limited to 'gn2/wqflask/templates/wgcna_results.html')

diff --git a/gn2/wqflask/templates/wgcna_results.html b/gn2/wqflask/templates/wgcna_results.html
new file mode 100644
index 00000000..0dc030b1
--- /dev/null
+++ b/gn2/wqflask/templates/wgcna_results.html
@@ -0,0 +1,76 @@
+{% extends "base.html" %}
+{% block title %}WCGNA results{% endblock %}
+
+{% block content %} <!-- Start of body -->
+  <div class="container">
+    <h1>WGCNA Results</h1>
+    Analysis found {{results['nmod']}} modules when scanning {{results['nphe']}} phenotypes, measured on {{results['nstr']}} strains.<br>
+    Additional parameters settings:
+    <ul>
+      <li>Soft thresholds checked = {{results['requestform']['SoftThresholds']}}</li>
+      <li>Power used for this analysis = {{results['Power']}}</li>
+      <li>TomType = {{results['requestform']['TOMtype']}}</li>
+      <li>Minimum module size = {{results['requestform']['MinModuleSize'] }}</li>
+      <li>mergeCutHeight = {{results['requestform']['mergeCutHeight'] }}</li>
+    </ul>
+
+    <h3>Soft threshold table</h3>
+    <table width="80%">
+      <tr><th>Power</th><th>SFT.R.sq</th><th>slope</th><th>truncated.R.sq</th><th>mean.k</th><th>median.k</th><th>max.k</th><th>Analysis</th></tr>
+      {% for r in range(powers[0][0]|length) %}
+        {% if powers[0][1][r] > 0.85 %}
+        <tr style="color: #00ff00;">
+        {% elif powers[0][1][r] > 0.75 %}
+        <tr style="color: #aaaa00;">
+        {% else %}
+        <tr style="color: #ff0000;">
+        {% endif %}
+        {% for c in range(powers[0]|length) %}
+        <td>{{powers[0][c][r]|round(3)}}</td>
+       {% endfor %}
+        <td style="color: #000000;">
+          {% if powers[0][1][r] > 0.75 %}
+          <input type="submit" value="Redo use power = {{powers[0][0][r]}}" /></td>
+          {% endif %}
+        </tr>
+    {% endfor %}
+    </table>
+    <h3>WGCNA module plot</h3>
+                <a href="/tmp/{{ results['imgurl'] }}">
+                    <img alt="Embedded Image" src="data:image/png;base64,
+                    {% for elem in results['imgdata'] -%}
+                    {% print("%c"|format(elem)) %}
+                    {%- endfor %}
+                    " /></a>
+
+
+    <h3>Phenotype / Module table</h3>
+    <table width="80%">
+      <tr><th>Phenotype</th><th>Module</th></tr>
+      {% for r in range(results['nphe']) %}
+        <tr>
+          <td>{{results['phenotypes'][r][0]}}</td>
+          <td>{{results['network'][0][r]}}</td>
+        </tr>
+    {% endfor %}
+    </table>
+
+    <h3>Module eigen genes</h3>
+    <table width="80%">
+      <tr><th>Phenotype</th>
+      {% for m in range(results['nmod']) %}
+        <th><input type="submit" value="Add module {{m}} to collection" /></th>
+      {% endfor %}
+      </tr>
+      {% for r in range(results['nstr']) %}
+        <tr>
+          <td>{{results['strains'][r][0]}}</td>
+          {% for m in range(results['nmod']) %}
+          <td>{{results['network'][2][m][r]}}</td>
+          {% endfor %}
+        </tr>
+    {% endfor %}
+    </table>
+  </div>
+{% endblock %}
+
-- 
cgit 1.4.1